Click here to switch to the map view.

The map label for this gene is 238916220

Identifier: 238916220

GI number: 238916220

Start: 284014

End: 285795

Strand: Direct

Name: 238916220

Synonym: EUBELI_00254

Alternate gene names: NA

Gene position: 284014-285795 (Clockwise)

Preceding gene: 238916219

Following gene: 238916221

Centisome position: 13.25

GC content: 29.29

Gene sequence:

>1782_bases
GTGTATTTAACAAAATGGAGACCAGCTATGAACAAACGCTTAACAATTTATATGACATACAATAAAAATGGAATAATTGA
TGATTATATTGTTTATATGTTAAAGCAGTTAGTCAATGTTTCTTCAGATATAATTGTTGTGAGTAATAAAAAGCTTAAGC
AACGAGAAAAAGAAAAAATTGCATTTGTATCTGAATACATAGAGCGCGGTAATGAAAAGTTTGATGTAGGGGCATATTCA
CAAGTTATTAAGGAATTGTATGATAAAAGACAGATTTATGAATATGATGAACTTGTATTAATTAATGATTCTGTATTTGG
ACCTTTTTTTGATTTAAATGATATGTTTAGTGCTATGGATAGAAGAAAGGGACTGGATTTTTGGGGAATTACCAAAAGAG
GCAGATCTGATTTTGATGGTGGAGCTGGAGTTTATCCAGAACATATTCAAAGCTATTTTTATGCTTTTAGAAAAAGTATT
ATTTCACAGGATGCATTTAAGGAATACTGGCAGCAAGTAGTTGATGAAATTTCAGATTTTAGAAGTGCAATACTTAATTA
TGAATTTAAATTGACAGAACATTTTGAAAAACTAGGTTTTAAATGGGATACATATTGTGATTGTAATGATTATATTGGAA
ACAATATAAATAGGAATTTTAGTCCATATCATTATTCTACCTATGAATTGATTAAGGATAAAAGATGCCCTTTTTTAAAG
CGAAAACTTTTTACAGGTGATTTTGTAAATAAAGAATACACAGATGCAGTTGATTTAAAAAATGCATATAATTTCATTAA
GGACAATACAGATTACGATTTGAATTTGATATGGGATTATGTTTTAAGAGAATATGAATTATCTTCAATCATGAATGCAA
TGCAGATGGTTGAGATAATAGACAAACCAATACAAGAGGAAAATGAATCCAAAGATAAAGCAGAGTTGTTCTTTTTTATA
AAGAGGGATGATGAAAGACTATCATATATAGAACAAAAGGCTAATGAAAATGTTTTAAACAACATTAACGATGAAAGATA
TCTAGGTAGTATCAAATCGTTGTTTAATAATGATTCCAGATTAGGGGTTCTCATACCGCCGATGAAAACATTTGGAAAGG
TGAGTTTAAGTCTTAGTCATAGTTGGATTAATTTAAATGTTTTCGAAAAAATGAAGGATAAATTAGAAATAACAGTTCCT
TATTTATTGGATAAAGCTCCTGTTTATCAAATAAATGGATTAGTGTGCAGGAAAGAACTATTATCAAACGATGTTATTAA
ATTACTGGAATTGGATAAAACAGGTACAATTTTACAGATGATTCCGCTAATAGCACAGGAAAAAGGCTATTACACAAAAC
AGGTGATTACTAAAGATTATGTTGCCACACAGATTTATAATCTTACAGGGATGTTAAGCGTGTTAGGAGAAAAGATTTCT
GATAATGCTAGAAATTATTCTGTCAGAGAAATGACTGACCAGTTGATGGAAGAAAAAATAAAACATTTTTTAGTTTCGGC
TAAAAAAGTGTACATATATGGGGCAGGAGAGTTAGCTTGCCGCGTTGCAGAAATTGCAAAAAAATATTGCAATTTAAGGG
GAATTCTTGTCAGCGACAAGAGAAGTAATCTTTCGAATATTTGCGGAATTCAGGTTATGCAGTATTCAGAATTAAAATAT
AAGGATATTGATGTAATTGTTGCCGTAGGAAAGAAAAATAATAGAAATATAGAGAGAATATTAAAAGATGATAATATAAA
GAATATTCTTTATGTGGATTAA

Upstream 100 bases:

>100_bases
AGGTTGTTCCTGACAATGATATGGGAATTATCGTATGTTTGAATGAATCAAATCAGAGAAAAGTAATTCCGTTATTAGAA
AAAAGAAATATTAATTACAT

Downstream 100 bases:

>100_bases
ACAGCAGGATATGGATAAGTTATGAGTAAAATAATAGTGTTTGGAACGGGGAAATATGGTAAAGAAGCATATGATTTTTT
TGGAGACGATAATGTTTTAT

Product: polysaccharide biosynthesis protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 593; Mature: 593

Protein sequence:

>593_residues
MYLTKWRPAMNKRLTIYMTYNKNGIIDDYIVYMLKQLVNVSSDIIVVSNKKLKQREKEKIAFVSEYIERGNEKFDVGAYS
QVIKELYDKRQIYEYDELVLINDSVFGPFFDLNDMFSAMDRRKGLDFWGITKRGRSDFDGGAGVYPEHIQSYFYAFRKSI
ISQDAFKEYWQQVVDEISDFRSAILNYEFKLTEHFEKLGFKWDTYCDCNDYIGNNINRNFSPYHYSTYELIKDKRCPFLK
RKLFTGDFVNKEYTDAVDLKNAYNFIKDNTDYDLNLIWDYVLREYELSSIMNAMQMVEIIDKPIQEENESKDKAELFFFI
KRDDERLSYIEQKANENVLNNINDERYLGSIKSLFNNDSRLGVLIPPMKTFGKVSLSLSHSWINLNVFEKMKDKLEITVP
YLLDKAPVYQINGLVCRKELLSNDVIKLLELDKTGTILQMIPLIAQEKGYYTKQVITKDYVATQIYNLTGMLSVLGEKIS
DNARNYSVREMTDQLMEEKIKHFLVSAKKVYIYGAGELACRVAEIAKKYCNLRGILVSDKRSNLSNICGIQVMQYSELKY
KDIDVIVAVGKKNNRNIERILKDDNIKNILYVD

Sequences:

>Translated_593_residues
MYLTKWRPAMNKRLTIYMTYNKNGIIDDYIVYMLKQLVNVSSDIIVVSNKKLKQREKEKIAFVSEYIERGNEKFDVGAYS
QVIKELYDKRQIYEYDELVLINDSVFGPFFDLNDMFSAMDRRKGLDFWGITKRGRSDFDGGAGVYPEHIQSYFYAFRKSI
ISQDAFKEYWQQVVDEISDFRSAILNYEFKLTEHFEKLGFKWDTYCDCNDYIGNNINRNFSPYHYSTYELIKDKRCPFLK
RKLFTGDFVNKEYTDAVDLKNAYNFIKDNTDYDLNLIWDYVLREYELSSIMNAMQMVEIIDKPIQEENESKDKAELFFFI
KRDDERLSYIEQKANENVLNNINDERYLGSIKSLFNNDSRLGVLIPPMKTFGKVSLSLSHSWINLNVFEKMKDKLEITVP
YLLDKAPVYQINGLVCRKELLSNDVIKLLELDKTGTILQMIPLIAQEKGYYTKQVITKDYVATQIYNLTGMLSVLGEKIS
DNARNYSVREMTDQLMEEKIKHFLVSAKKVYIYGAGELACRVAEIAKKYCNLRGILVSDKRSNLSNICGIQVMQYSELKY
KDIDVIVAVGKKNNRNIERILKDDNIKNILYVD
>Mature_593_residues
MYLTKWRPAMNKRLTIYMTYNKNGIIDDYIVYMLKQLVNVSSDIIVVSNKKLKQREKEKIAFVSEYIERGNEKFDVGAYS
QVIKELYDKRQIYEYDELVLINDSVFGPFFDLNDMFSAMDRRKGLDFWGITKRGRSDFDGGAGVYPEHIQSYFYAFRKSI
ISQDAFKEYWQQVVDEISDFRSAILNYEFKLTEHFEKLGFKWDTYCDCNDYIGNNINRNFSPYHYSTYELIKDKRCPFLK
RKLFTGDFVNKEYTDAVDLKNAYNFIKDNTDYDLNLIWDYVLREYELSSIMNAMQMVEIIDKPIQEENESKDKAELFFFI
KRDDERLSYIEQKANENVLNNINDERYLGSIKSLFNNDSRLGVLIPPMKTFGKVSLSLSHSWINLNVFEKMKDKLEITVP
YLLDKAPVYQINGLVCRKELLSNDVIKLLELDKTGTILQMIPLIAQEKGYYTKQVITKDYVATQIYNLTGMLSVLGEKIS
DNARNYSVREMTDQLMEEKIKHFLVSAKKVYIYGAGELACRVAEIAKKYCNLRGILVSDKRSNLSNICGIQVMQYSELKY
KDIDVIVAVGKKNNRNIERILKDDNIKNILYVD

Specific function: Could have an enzymatic function [H]

COG id: COG3754

COG function: function code M; Lipopolysaccharide biosynthesis protein

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: To V.anguillarum virulence protein virA [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR007739 [H]

Pfam domain/function: PF05045 RgpF [H]

EC number: NA

Molecular weight: Translated: 69625; Mature: 69625

Theoretical pI: Translated: 7.00; Mature: 7.00

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MYLTKWRPAMNKRLTIYMTYNKNGIIDDYIVYMLKQLVNVSSDIIVVSNKKLKQREKEKI
CCCCCCCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHCCCCCEEEECCCHHHHHHHHHH
AFVSEYIERGNEKFDVGAYSQVIKELYDKRQIYEYDELVLINDSVFGPFFDLNDMFSAMD
HHHHHHHHCCCCEECCHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCHHHHHHHHH
RRKGLDFWGITKRGRSDFDGGAGVYPEHIQSYFYAFRKSIISQDAFKEYWQQVVDEISDF
HHCCCCEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHH
RSAILNYEFKLTEHFEKLGFKWDTYCDCNDYIGNNINRNFSPYHYSTYELIKDKRCPFLK
HHHHHCCCCHHHHHHHHHCCCCCCCCCCHHHCCCCCCCCCCCCCCHHHHHHHCCCCCHHH
RKLFTGDFVNKEYTDAVDLKNAYNFIKDNTDYDLNLIWDYVLREYELSSIMNAMQMVEII
HHHHCCCCCCCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
DKPIQEENESKDKAELFFFIKRDDERLSYIEQKANENVLNNINDERYLGSIKSLFNNDSR
HHHHHCCCCCCCCEEEEEEEECCCHHHHHHHHHHCCHHHHCCCHHHHHHHHHHHHCCCCC
LGVLIPPMKTFGKVSLSLSHSWINLNVFEKMKDKLEITVPYLLDKAPVYQINGLVCRKEL
EEEEECCHHHHCCEEEEEEEEEEEEHHHHHHHHHEEEEEHHHHCCCCCEECCHHHHHHHH
LSNDVIKLLELDKTGTILQMIPLIAQEKGYYTKQVITKDYVATQIYNLTGMLSVLGEKIS
HHHHHHHHHHCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
DNARNYSVREMTDQLMEEKIKHFLVSAKKVYIYGAGELACRVAEIAKKYCNLRGILVSDK
CCCCCCHHHHHHHHHHHHHHHHHHHCCCEEEEEECHHHHHHHHHHHHHHCCCCEEEEECC
RSNLSNICGIQVMQYSELKYKDIDVIVAVGKKNNRNIERILKDDNIKNILYVD
CCCHHHHHHHEEEECCCCCCCCEEEEEEECCCCCCCHHHHHCCCCCCEEEEEC
>Mature Secondary Structure
MYLTKWRPAMNKRLTIYMTYNKNGIIDDYIVYMLKQLVNVSSDIIVVSNKKLKQREKEKI
CCCCCCCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHCCCCCEEEECCCHHHHHHHHHH
AFVSEYIERGNEKFDVGAYSQVIKELYDKRQIYEYDELVLINDSVFGPFFDLNDMFSAMD
HHHHHHHHCCCCEECCHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCHHHHHHHHH
RRKGLDFWGITKRGRSDFDGGAGVYPEHIQSYFYAFRKSIISQDAFKEYWQQVVDEISDF
HHCCCCEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHH
RSAILNYEFKLTEHFEKLGFKWDTYCDCNDYIGNNINRNFSPYHYSTYELIKDKRCPFLK
HHHHHCCCCHHHHHHHHHCCCCCCCCCCHHHCCCCCCCCCCCCCCHHHHHHHCCCCCHHH
RKLFTGDFVNKEYTDAVDLKNAYNFIKDNTDYDLNLIWDYVLREYELSSIMNAMQMVEII
HHHHCCCCCCCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
DKPIQEENESKDKAELFFFIKRDDERLSYIEQKANENVLNNINDERYLGSIKSLFNNDSR
HHHHHCCCCCCCCEEEEEEEECCCHHHHHHHHHHCCHHHHCCCHHHHHHHHHHHHCCCCC
LGVLIPPMKTFGKVSLSLSHSWINLNVFEKMKDKLEITVPYLLDKAPVYQINGLVCRKEL
EEEEECCHHHHCCEEEEEEEEEEEEHHHHHHHHHEEEEEHHHHCCCCCEECCHHHHHHHH
LSNDVIKLLELDKTGTILQMIPLIAQEKGYYTKQVITKDYVATQIYNLTGMLSVLGEKIS
HHHHHHHHHHCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
DNARNYSVREMTDQLMEEKIKHFLVSAKKVYIYGAGELACRVAEIAKKYCNLRGILVSDK
CCCCCCHHHHHHHHHHHHHHHHHHHCCCEEEEEECHHHHHHHHHHHHHHCCCCEEEEECC
RSNLSNICGIQVMQYSELKYKDIDVIVAVGKKNNRNIERILKDDNIKNILYVD
CCCHHHHHHHEEEECCCCCCCCEEEEEEECCCCCCCHHHHHCCCCCCEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9163424 [H]