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The map label for this gene is lytR [H]

Identifier: 238916104

GI number: 238916104

Start: 161519

End: 163021

Strand: Direct

Name: lytR [H]

Synonym: EUBELI_00138

Alternate gene names: 238916104

Gene position: 161519-163021 (Clockwise)

Preceding gene: 238916103

Following gene: 238916105

Centisome position: 7.53

GC content: 35.33

Gene sequence:

>1503_bases
GTGGCAAGTAAGGTTTGGATTATGAGTAGTAAAACAGCGAAAAAGCGTAAGAAGAAAAATAGTCAGGCATTGATGATATC
AGGACTTGTATTATCAGCAGTACAGTTTATTGTGTCTGTAGTGATGATAGTATTTATACATTATATTGGATTGATTCCAA
CATCAATTAAGGTAGCAGCAGGAATTATTCTGATAGGATGTTCTCTTATCACAGCAATAACACAGAGGTGGAAAGTACTA
GGTATAATAACTAAAGTATTATCTGTAATACTTTCTGTAATTATGGTTGTTGGATGTGCATACCTTGGATTCACAAGGGG
ATATCTTGGAAAGATGACTGGTAAAAAGACACAGACAGATATTGTTGGTGTATATGTTTTGTCAGGCGATGTAGCACAGA
GTCTTGAAGAGATAAATGGATATACATGTGGCAGAATTCCTACGCTGGATTCAGACAATCTTGAGAAAATGCTTGATGAT
ATCAGCAATAAAGATGTAGCACTTTCTTATAAAGATTATACATCTATTATGGATGCTGTGGATGCACTTTTGAATAAGGA
AGTTAAATCCATAATAATCAATGAAAGTTATCTGGGCGTTTTTGAGGATATGGATGGTTATGAGAATCTTGAAAGCAGAA
TCAGATGTATATATAGTGAAAAGTATGTAACGCAGGTAGAAGACAGCAATTCTAAGTACATGAGTAATGAGAATGTAATA
GGAATATATATAAGCGGAATAGATACTTCTGGACCTCCTAATACAACAAGCAGAAGTGATGTTAATATTCTGTTGTTTAT
GAATACTAAGACACATCAGATTCTTATGATTAATACACCAAGGGATTATTATGTTCCGTTAAGTATATCTAATGGTGTGA
GAGATAAGCTTACACATGCCGGAATATATGGAATAGATTGTTCAAGAGAAACATTGGAAATGTTGTATGGAATTAACGTT
GAATATTACCTTAAGGTTAATTTCACAGGATTTCTTAATGTAATAGATGCTTTAGGAGGAGTTGACATAACATTAGATTA
TGATGCAACGCTTTCACAGACTGGCAATCTTACGGTTCATAAAGGTGTTAATCATTTTAATGCACAGCAGGCACTTACTT
TCTCAAGAGAAAGACATGCATATGCTGACGGAGACAGACAGCGTGGAAAGAATCAGATGATGGTTATTAACGCTGTAATC
AAGAAGATGGCATCACCAAGTATGATAACTAATTACACATCAATCCTTAATACTGTATCGGACAATATGATTACTAATAT
GTCATACGATAAGATATCTGAACTGGCACAGTTACAGATTAGCAAGAATATTGACTGGGATATCCAGAGTTATAGTGTAA
GTGGTGAAGGCGCATCTGCGACAACATTCTCTGCAGGAAAGCAGAAGCTGTATGTCATGGTACCTTATGAAGATCAGGTA
AAGCAGGCAACGGCATATCTTGAGCAGATGTGCAGGGATGAGATTATAAATGTTAGTGAGTAG

Upstream 100 bases:

>100_bases
GAAGATGTTGTTAAAATGGATCTTGAATATATAGACAATTGGAACATAGGACTGGATTTCAGAATAATATTTAAGACAAT
ACTTACAGTAATTACTGTTG

Downstream 100 bases:

>100_bases
ATGACGAGTAAATAAAAGAAGGTACATACATGAATTCAAGAAAAGAAAGTGGATTTACATATATAGTGAGAACTGCATTT
TGTTATGCGTTATCTATACT

Product: hypothetical protein

Products: NA

Alternate protein names: Membrane-bound protein lytR [H]

Number of amino acids: Translated: 500; Mature: 499

Protein sequence:

>500_residues
MASKVWIMSSKTAKKRKKKNSQALMISGLVLSAVQFIVSVVMIVFIHYIGLIPTSIKVAAGIILIGCSLITAITQRWKVL
GIITKVLSVILSVIMVVGCAYLGFTRGYLGKMTGKKTQTDIVGVYVLSGDVAQSLEEINGYTCGRIPTLDSDNLEKMLDD
ISNKDVALSYKDYTSIMDAVDALLNKEVKSIIINESYLGVFEDMDGYENLESRIRCIYSEKYVTQVEDSNSKYMSNENVI
GIYISGIDTSGPPNTTSRSDVNILLFMNTKTHQILMINTPRDYYVPLSISNGVRDKLTHAGIYGIDCSRETLEMLYGINV
EYYLKVNFTGFLNVIDALGGVDITLDYDATLSQTGNLTVHKGVNHFNAQQALTFSRERHAYADGDRQRGKNQMMVINAVI
KKMASPSMITNYTSILNTVSDNMITNMSYDKISELAQLQISKNIDWDIQSYSVSGEGASATTFSAGKQKLYVMVPYEDQV
KQATAYLEQMCRDEIINVSE

Sequences:

>Translated_500_residues
MASKVWIMSSKTAKKRKKKNSQALMISGLVLSAVQFIVSVVMIVFIHYIGLIPTSIKVAAGIILIGCSLITAITQRWKVL
GIITKVLSVILSVIMVVGCAYLGFTRGYLGKMTGKKTQTDIVGVYVLSGDVAQSLEEINGYTCGRIPTLDSDNLEKMLDD
ISNKDVALSYKDYTSIMDAVDALLNKEVKSIIINESYLGVFEDMDGYENLESRIRCIYSEKYVTQVEDSNSKYMSNENVI
GIYISGIDTSGPPNTTSRSDVNILLFMNTKTHQILMINTPRDYYVPLSISNGVRDKLTHAGIYGIDCSRETLEMLYGINV
EYYLKVNFTGFLNVIDALGGVDITLDYDATLSQTGNLTVHKGVNHFNAQQALTFSRERHAYADGDRQRGKNQMMVINAVI
KKMASPSMITNYTSILNTVSDNMITNMSYDKISELAQLQISKNIDWDIQSYSVSGEGASATTFSAGKQKLYVMVPYEDQV
KQATAYLEQMCRDEIINVSE
>Mature_499_residues
ASKVWIMSSKTAKKRKKKNSQALMISGLVLSAVQFIVSVVMIVFIHYIGLIPTSIKVAAGIILIGCSLITAITQRWKVLG
IITKVLSVILSVIMVVGCAYLGFTRGYLGKMTGKKTQTDIVGVYVLSGDVAQSLEEINGYTCGRIPTLDSDNLEKMLDDI
SNKDVALSYKDYTSIMDAVDALLNKEVKSIIINESYLGVFEDMDGYENLESRIRCIYSEKYVTQVEDSNSKYMSNENVIG
IYISGIDTSGPPNTTSRSDVNILLFMNTKTHQILMINTPRDYYVPLSISNGVRDKLTHAGIYGIDCSRETLEMLYGINVE
YYLKVNFTGFLNVIDALGGVDITLDYDATLSQTGNLTVHKGVNHFNAQQALTFSRERHAYADGDRQRGKNQMMVINAVIK
KMASPSMITNYTSILNTVSDNMITNMSYDKISELAQLQISKNIDWDIQSYSVSGEGASATTFSAGKQKLYVMVPYEDQVK
QATAYLEQMCRDEIINVSE

Specific function: Attenuator role for operon expression [H]

COG id: COG1316

COG function: function code K; Transcriptional regulator

Gene ontology:

Cell location: Cytoplasmic [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the LytR/CpsA/Psr regulatory protein family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004474 [H]

Pfam domain/function: PF03816 LytR_cpsA_psr [H]

EC number: NA

Molecular weight: Translated: 55487; Mature: 55355

Theoretical pI: Translated: 6.27; Mature: 6.27

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
4.2 %Met     (Translated Protein)
5.4 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
4.0 %Met     (Mature Protein)
5.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MASKVWIMSSKTAKKRKKKNSQALMISGLVLSAVQFIVSVVMIVFIHYIGLIPTSIKVAA
CCCEEEEECCCHHHHHHHCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHH
GIILIGCSLITAITQRWKVLGIITKVLSVILSVIMVVGCAYLGFTRGYLGKMTGKKTQTD
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
IVGVYVLSGDVAQSLEEINGYTCGRIPTLDSDNLEKMLDDISNKDVALSYKDYTSIMDAV
EEEEEEECCHHHHHHHHHCCEECCCCCCCCCCCHHHHHHHCCCCCEEEEHHHHHHHHHHH
DALLNKEVKSIIINESYLGVFEDMDGYENLESRIRCIYSEKYVTQVEDSNSKYMSNENVI
HHHHHHHHHHHEECCHHHHHHHCCCCHHHHHHHHHHHHHHHHHEEECCCCCCEECCCCEE
GIYISGIDTSGPPNTTSRSDVNILLFMNTKTHQILMINTPRDYYVPLSISNGVRDKLTHA
EEEEECCCCCCCCCCCCCCCEEEEEEEECCCEEEEEEECCCCEEEEEEECCCCHHHHHHC
GIYGIDCSRETLEMLYGINVEYYLKVNFTGFLNVIDALGGVDITLDYDATLSQTGNLTVH
CEEEECCCHHHHHHHHCCCEEEEEEEECHHHHHHHHHHCCEEEEEECCCCCCCCCCEEEE
KGVNHFNAQQALTFSRERHAYADGDRQRGKNQMMVINAVIKKMASPSMITNYTSILNTVS
CCCCCCCHHHHHHHHHHHCCCCCCHHHCCCCCEEEHHHHHHHHCCCHHHHHHHHHHHHHH
DNMITNMSYDKISELAQLQISKNIDWDIQSYSVSGEGASATTFSAGKQKLYVMVPYEDQV
HHHCCCCCHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCEEECCCCCEEEEEECCHHHH
KQATAYLEQMCRDEIINVSE
HHHHHHHHHHHHHHCCCCCC
>Mature Secondary Structure 
ASKVWIMSSKTAKKRKKKNSQALMISGLVLSAVQFIVSVVMIVFIHYIGLIPTSIKVAA
CCEEEEECCCHHHHHHHCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHH
GIILIGCSLITAITQRWKVLGIITKVLSVILSVIMVVGCAYLGFTRGYLGKMTGKKTQTD
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
IVGVYVLSGDVAQSLEEINGYTCGRIPTLDSDNLEKMLDDISNKDVALSYKDYTSIMDAV
EEEEEEECCHHHHHHHHHCCEECCCCCCCCCCCHHHHHHHCCCCCEEEEHHHHHHHHHHH
DALLNKEVKSIIINESYLGVFEDMDGYENLESRIRCIYSEKYVTQVEDSNSKYMSNENVI
HHHHHHHHHHHEECCHHHHHHHCCCCHHHHHHHHHHHHHHHHHEEECCCCCCEECCCCEE
GIYISGIDTSGPPNTTSRSDVNILLFMNTKTHQILMINTPRDYYVPLSISNGVRDKLTHA
EEEEECCCCCCCCCCCCCCCEEEEEEEECCCEEEEEEECCCCEEEEEEECCCCHHHHHHC
GIYGIDCSRETLEMLYGINVEYYLKVNFTGFLNVIDALGGVDITLDYDATLSQTGNLTVH
CEEEECCCHHHHHHHHCCCEEEEEEEECHHHHHHHHHHCCEEEEEECCCCCCCCCCEEEE
KGVNHFNAQQALTFSRERHAYADGDRQRGKNQMMVINAVIKKMASPSMITNYTSILNTVS
CCCCCCCHHHHHHHHHHHCCCCCCHHHCCCCCEEEHHHHHHHHCCCHHHHHHHHHHHHHH
DNMITNMSYDKISELAQLQISKNIDWDIQSYSVSGEGASATTFSAGKQKLYVMVPYEDQV
HHHCCCCCHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCEEECCCCCEEEEEECCHHHH
KQATAYLEQMCRDEIINVSE
HHHHHHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 12721630 [H]