Click here to switch to the map view.

The map label for this gene is licD [H]

Identifier: 238916066

GI number: 238916066

Start: 110155

End: 110997

Strand: Direct

Name: licD [H]

Synonym: EUBELI_00099

Alternate gene names: 238916066

Gene position: 110155-110997 (Clockwise)

Preceding gene: 238916065

Following gene: 238916067

Centisome position: 5.14

GC content: 35.11

Gene sequence:

>843_bases
ATGAAAGAATACGATGAGGCAACCCTTAAAAAGGTACAGCAGACAGAGATGGAAATTCTTAGAGATTTCATCAAAGTGTG
TGACGAGAATAATCTTACATGGTTTGGTGATGCCGGATCAGGAATCGGGGCAATAAGACATAAGGGATTCATTCCATGGG
ATGATGATATTGATGTAATGCTTCCTAGAAAAGATTTCGACAAGATGATGGAAGTTATTAAAAGAGATTACAGCGATAAG
TATTCAATTGCCAATGTTGAAACAATGAAGAATTATCCATTGATGACAACAAGAATTATGATGAAAGGAACAACATTTAT
AGAGGAACCTCTTAAGAATATCAAATGTGATCTTGGAATATTCCTTGATGTGTATCCGCTTGATAATATATCAGATGATG
AGGAAGAACTTAAAAAGCAGGCTAAAGCTGCCTGGTTCTGGAGCAAGCTTCTTATTCTCAGACATGTTGCGTTCCCGGTA
CTTCCTTATAAGGGAGTTAAGGCTAAGATAACACATATTGCAACAGCAATTATTCATGCCGGACTTGTTGTGTTCAGAAT
TTCACATAACTGGATTGCTGGCAAATGCTTAAAGATTGCATCAAGATATAATGATGTGGATACTAAGAGAATGGCATTCT
TATTTGATACAGATCCATATTATCATATAATGTTAAAGGATGAGATATATCCATTACAGATGTATGATTTTGAAGATATT
AAGATGCCTCTTCCAGCCAACGAAGATGAGAAGTTAAGAAATATGTATGGAGATTATATGCAGCTTCCTCCAGTTGAAAA
GAGAAAGAATCATTACCCATATAAATTGGAATTTAAAGACTAA

Upstream 100 bases:

>100_bases
GTATCAGAAGTTCTGGCCCAAATGTATTGCTAAAATGCTTACTAAGGCATACAGCAAGAGTGAAGAATCTAATAATATGA
AGCAGGGATAGGAGTTAACG

Downstream 100 bases:

>100_bases
GAGGTATATATGAATATTATTTCAAGAATAATGGGTGTGGATAAGACACCAGAAGATAAGTACAAATATATCTGGTTTAC
AATGGGAACAGCATGTTTCG

Product: lipopolysaccharide cholinephosphotransferase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 280; Mature: 280

Protein sequence:

>280_residues
MKEYDEATLKKVQQTEMEILRDFIKVCDENNLTWFGDAGSGIGAIRHKGFIPWDDDIDVMLPRKDFDKMMEVIKRDYSDK
YSIANVETMKNYPLMTTRIMMKGTTFIEEPLKNIKCDLGIFLDVYPLDNISDDEEELKKQAKAAWFWSKLLILRHVAFPV
LPYKGVKAKITHIATAIIHAGLVVFRISHNWIAGKCLKIASRYNDVDTKRMAFLFDTDPYYHIMLKDEIYPLQMYDFEDI
KMPLPANEDEKLRNMYGDYMQLPPVEKRKNHYPYKLEFKD

Sequences:

>Translated_280_residues
MKEYDEATLKKVQQTEMEILRDFIKVCDENNLTWFGDAGSGIGAIRHKGFIPWDDDIDVMLPRKDFDKMMEVIKRDYSDK
YSIANVETMKNYPLMTTRIMMKGTTFIEEPLKNIKCDLGIFLDVYPLDNISDDEEELKKQAKAAWFWSKLLILRHVAFPV
LPYKGVKAKITHIATAIIHAGLVVFRISHNWIAGKCLKIASRYNDVDTKRMAFLFDTDPYYHIMLKDEIYPLQMYDFEDI
KMPLPANEDEKLRNMYGDYMQLPPVEKRKNHYPYKLEFKD
>Mature_280_residues
MKEYDEATLKKVQQTEMEILRDFIKVCDENNLTWFGDAGSGIGAIRHKGFIPWDDDIDVMLPRKDFDKMMEVIKRDYSDK
YSIANVETMKNYPLMTTRIMMKGTTFIEEPLKNIKCDLGIFLDVYPLDNISDDEEELKKQAKAAWFWSKLLILRHVAFPV
LPYKGVKAKITHIATAIIHAGLVVFRISHNWIAGKCLKIASRYNDVDTKRMAFLFDTDPYYHIMLKDEIYPLQMYDFEDI
KMPLPANEDEKLRNMYGDYMQLPPVEKRKNHYPYKLEFKD

Specific function: Transfers phosphorylcholine (ChoP) from choline diphosphonucleoside to the lipopolysaccharide (LPS) [H]

COG id: COG3475

COG function: function code M; LPS biosynthesis protein

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the licD transferase family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR007074 [H]

Pfam domain/function: PF04991 LicD [H]

EC number: NA

Molecular weight: Translated: 32993; Mature: 32993

Theoretical pI: Translated: 6.41; Mature: 6.41

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
5.4 %Met     (Translated Protein)
6.4 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
5.4 %Met     (Mature Protein)
6.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKEYDEATLKKVQQTEMEILRDFIKVCDENNLTWFGDAGSGIGAIRHKGFIPWDDDIDVM
CCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCHHHHHCCCCCCCCCCEEE
LPRKDFDKMMEVIKRDYSDKYSIANVETMKNYPLMTTRIMMKGTTFIEEPLKNIKCDLGI
ECCHHHHHHHHHHHHCCCCCEEECCHHHHCCCCCEEEHEECCCCHHHHHHHHHCCCCCEE
FLDVYPLDNISDDEEELKKQAKAAWFWSKLLILRHVAFPVLPYKGVKAKITHIATAIIHA
EEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHH
GLVVFRISHNWIAGKCLKIASRYNDVDTKRMAFLFDTDPYYHIMLKDEIYPLQMYDFEDI
CEEEEEEECCCHHHHHHHHHHHCCCCCCCEEEEEEECCCEEEEEEECCCCEEEEECCCCC
KMPLPANEDEKLRNMYGDYMQLPPVEKRKNHYPYKLEFKD
EECCCCCCHHHHHHHCCCHHCCCCCHHHCCCCCEEEEECC
>Mature Secondary Structure
MKEYDEATLKKVQQTEMEILRDFIKVCDENNLTWFGDAGSGIGAIRHKGFIPWDDDIDVM
CCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCHHHHHCCCCCCCCCCEEE
LPRKDFDKMMEVIKRDYSDKYSIANVETMKNYPLMTTRIMMKGTTFIEEPLKNIKCDLGI
ECCHHHHHHHHHHHHCCCCCEEECCHHHHCCCCCEEEHEECCCCHHHHHHHHHCCCCCEE
FLDVYPLDNISDDEEELKKQAKAAWFWSKLLILRHVAFPVLPYKGVKAKITHIATAIIHA
EEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHH
GLVVFRISHNWIAGKCLKIASRYNDVDTKRMAFLFDTDPYYHIMLKDEIYPLQMYDFEDI
CEEEEEEECCCHHHHHHHHHHHCCCCCCCEEEEEEECCCEEEEEEECCCCEEEEECCCCC
KMPLPANEDEKLRNMYGDYMQLPPVEKRKNHYPYKLEFKD
EECCCCCCHHHHHHHCCCHHCCCCCHHHCCCCCEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 2479481; 7542800; 10632893 [H]