BacMap

Definition	Eubacterium eligens ATCC 27750 chromosome, complete genome.
Accession	NC_012778
Length	2,144,190

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The map label for this gene is rfbB [H]

Identifier: 238916061

GI number: 238916061

Start: 102385

End: 103653

Strand: Direct

Name: rfbB [H]

Synonym: EUBELI_00094

Alternate gene names: 238916061

Gene position: 102385-103653 (Clockwise)

Preceding gene: 238916060

Following gene: 238916062

Centisome position: 4.77

GC content: 36.25

Gene sequence:

>1269_bases
ATGCTTAACAACGAGAATTCAATCGAAGTAAGGAATGTATCCAAAAGCTTTAAAGTGTATTTTGATAAAGGCAATGAACT
TAAAGAGAAAATGCTGTTCTGGAAGAGAAACAGATATGAAAACAGAGTTGTTCTTAATAATATAAGTTTTACAGTAAAGA
AGGGTGAGGCAGTAGGTCTTATTGGAAGAAACGGCTGTGGTAAGAGTACAACACTTAAGCTGTTGACTAAGATTATATAT
CCAGACAGCGGTTCTATTGAAATGTGCGGAAGAGTTTCAAGTCTTCTTGAACTTGGAGCAGGATTCCACCCTGACATGAG
TGGAAGAGAAAACATATACACTAATGCTGCGATATTTGGTCTTACTAAGAAAGAGATAGATGAAAGACTTGAGGATATTA
TCGAGTTTTCAGAATTACAACAGTTTATTGATAATCCTGTAAGAACATATTCATCAGGTATGTACATGAGACTTGCATTC
TCAGTAGCTATTAATGTTAATGCAGATATCCTTCTTATTGATGAGATTCTTGCTGTAGGTGATGCGAATTTTCAGGCAAA
ATGTTTCAACAAGTTAAGAGAGATTAAGGCTAATGGAACAACTATTATTATTGTATCACATGCTCTTGGACAGATTGAAG
AGATATGTGATAAGTCAATCTGGATTAAAGATGGACAGATTGAGCAGGAAGGTGATCCAAGAGAAGTTGACATTGCTTAT
CTTGATTATATGAATCAGGAAAGATTAAGCAAGGATGAGCAGGAAAGAGCCAGAATCTTAAGAATTGAAGCAGAGCAGAG
AAGACTTAAGAAGGCTGAGGAAGAGAATAAAGAAGGTGGTAACGATAAGCGTTACGGAAGTTTCGAGGCAAGAATTAATG
ATGTTATCTTGTCTTGTGATGACGGCAATAGGACAGAAACTCTTGAAACAGGAAGAAAAGCCGTGATAGAGATAGATTAT
TCTGTTGAGACTCCGGTAAAAGAAGTTCATGCAAGATATATGATTTACAGAATTGATGGTCAGTTATGCAGCGGAAGCAG
TACTAAGATAGACAGACTTGATGCATTTGACCTTGAGAAAGATGGAAAGATTGTTATTGAGTTTGACAGTATGACACTTA
CAAGAAGCCAGTACTGGGTTGATATAGTGCTTGAGAAAGCTGATGGAACACCAATTGATTATTATAAAGAAGCAGCAAGG
TTTAATGTTGTATCAGGAATTGAAGATATGGGTGTTGCAAGAATTGAGCATACATGGAAGAACTGTTAA

Upstream 100 bases:

>100_bases
ATAACAGGCGTTGTTTTTGTTATTCTGGGAGCAATTATATTCAGAAGACTTCAGCGCGGATTCGCAGAAGAGTTTTAATG
TTTAAGAAAGTGAGATAAGT

Downstream 100 bases:

>100_bases
TTGAAAGGTAGTAGCTATGAAAAAGAGTGATAATGTAATTAATATACAGCTTTCAGATAATCAGGGAAAACTTCATATTA
GAATTGCAGGCTGGTATATT

Product: lipopolysaccharide transport system ATP-binding protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 422; Mature: 422

Protein sequence:

>422_residues
MLNNENSIEVRNVSKSFKVYFDKGNELKEKMLFWKRNRYENRVVLNNISFTVKKGEAVGLIGRNGCGKSTTLKLLTKIIY
PDSGSIEMCGRVSSLLELGAGFHPDMSGRENIYTNAAIFGLTKKEIDERLEDIIEFSELQQFIDNPVRTYSSGMYMRLAF
SVAINVNADILLIDEILAVGDANFQAKCFNKLREIKANGTTIIIVSHALGQIEEICDKSIWIKDGQIEQEGDPREVDIAY
LDYMNQERLSKDEQERARILRIEAEQRRLKKAEEENKEGGNDKRYGSFEARINDVILSCDDGNRTETLETGRKAVIEIDY
SVETPVKEVHARYMIYRIDGQLCSGSSTKIDRLDAFDLEKDGKIVIEFDSMTLTRSQYWVDIVLEKADGTPIDYYKEAAR
FNVVSGIEDMGVARIEHTWKNC

Sequences:

>Translated_422_residues
MLNNENSIEVRNVSKSFKVYFDKGNELKEKMLFWKRNRYENRVVLNNISFTVKKGEAVGLIGRNGCGKSTTLKLLTKIIY
PDSGSIEMCGRVSSLLELGAGFHPDMSGRENIYTNAAIFGLTKKEIDERLEDIIEFSELQQFIDNPVRTYSSGMYMRLAF
SVAINVNADILLIDEILAVGDANFQAKCFNKLREIKANGTTIIIVSHALGQIEEICDKSIWIKDGQIEQEGDPREVDIAY
LDYMNQERLSKDEQERARILRIEAEQRRLKKAEEENKEGGNDKRYGSFEARINDVILSCDDGNRTETLETGRKAVIEIDY
SVETPVKEVHARYMIYRIDGQLCSGSSTKIDRLDAFDLEKDGKIVIEFDSMTLTRSQYWVDIVLEKADGTPIDYYKEAAR
FNVVSGIEDMGVARIEHTWKNC
>Mature_422_residues
MLNNENSIEVRNVSKSFKVYFDKGNELKEKMLFWKRNRYENRVVLNNISFTVKKGEAVGLIGRNGCGKSTTLKLLTKIIY
PDSGSIEMCGRVSSLLELGAGFHPDMSGRENIYTNAAIFGLTKKEIDERLEDIIEFSELQQFIDNPVRTYSSGMYMRLAF
SVAINVNADILLIDEILAVGDANFQAKCFNKLREIKANGTTIIIVSHALGQIEEICDKSIWIKDGQIEQEGDPREVDIAY
LDYMNQERLSKDEQERARILRIEAEQRRLKKAEEENKEGGNDKRYGSFEARINDVILSCDDGNRTETLETGRKAVIEIDY
SVETPVKEVHARYMIYRIDGQLCSGSSTKIDRLDAFDLEKDGKIVIEFDSMTLTRSQYWVDIVLEKADGTPIDYYKEAAR
FNVVSGIEDMGVARIEHTWKNC

Specific function: May form an ATP-driven O-antigen export apparatus, in association with RfbA [H]

COG id: COG1134

COG function: function code GM; ABC-type polysaccharide/polyol phosphate transport system, ATPase component

Gene ontology:

Cell location: Cell inner membrane; Peripheral membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transporter domain [H]

Homologues:

Organism=Homo sapiens, GI6005701, Length=253, Percent_Identity=28.0632411067194, Blast_Score=99, Evalue=6e-21,
Organism=Homo sapiens, GI27477115, Length=257, Percent_Identity=28.7937743190661, Blast_Score=97, Evalue=2e-20,
Organism=Homo sapiens, GI153792144, Length=235, Percent_Identity=28.0851063829787, Blast_Score=95, Evalue=1e-19,
Organism=Homo sapiens, GI27436953, Length=211, Percent_Identity=27.0142180094787, Blast_Score=92, Evalue=6e-19,
Organism=Homo sapiens, GI31657092, Length=216, Percent_Identity=26.3888888888889, Blast_Score=86, Evalue=6e-17,
Organism=Homo sapiens, GI30795238, Length=206, Percent_Identity=26.6990291262136, Blast_Score=83, Evalue=4e-16,
Organism=Homo sapiens, GI27881501, Length=206, Percent_Identity=26.6990291262136, Blast_Score=83, Evalue=4e-16,
Organism=Homo sapiens, GI116734710, Length=214, Percent_Identity=29.4392523364486, Blast_Score=82, Evalue=7e-16,
Organism=Homo sapiens, GI27262624, Length=215, Percent_Identity=25.1162790697674, Blast_Score=75, Evalue=2e-13,
Organism=Homo sapiens, GI27262626, Length=215, Percent_Identity=25.1162790697674, Blast_Score=75, Evalue=2e-13,
Organism=Homo sapiens, GI105990541, Length=178, Percent_Identity=27.5280898876405, Blast_Score=71, Evalue=2e-12,
Organism=Homo sapiens, GI150417984, Length=203, Percent_Identity=22.6600985221675, Blast_Score=71, Evalue=2e-12,
Organism=Homo sapiens, GI89111135, Length=204, Percent_Identity=27.9411764705882, Blast_Score=70, Evalue=3e-12,
Organism=Homo sapiens, GI45446740, Length=240, Percent_Identity=22.5, Blast_Score=67, Evalue=4e-11,
Organism=Homo sapiens, GI47078218, Length=240, Percent_Identity=22.5, Blast_Score=67, Evalue=4e-11,
Organism=Escherichia coli, GI87081709, Length=246, Percent_Identity=26.4227642276423, Blast_Score=94, Evalue=2e-20,
Organism=Escherichia coli, GI48995001, Length=197, Percent_Identity=28.4263959390863, Blast_Score=90, Evalue=3e-19,
Organism=Escherichia coli, GI1787370, Length=213, Percent_Identity=26.7605633802817, Blast_Score=88, Evalue=1e-18,
Organism=Escherichia coli, GI1789891, Length=210, Percent_Identity=26.6666666666667, Blast_Score=81, Evalue=1e-16,
Organism=Escherichia coli, GI1789593, Length=212, Percent_Identity=25.9433962264151, Blast_Score=80, Evalue=3e-16,
Organism=Escherichia coli, GI1787792, Length=214, Percent_Identity=27.1028037383178, Blast_Score=79, Evalue=5e-16,
Organism=Escherichia coli, GI48994943, Length=245, Percent_Identity=22.4489795918367, Blast_Score=79, Evalue=6e-16,
Organism=Escherichia coli, GI1788761, Length=246, Percent_Identity=27.2357723577236, Blast_Score=77, Evalue=2e-15,
Organism=Escherichia coli, GI1787758, Length=213, Percent_Identity=24.8826291079812, Blast_Score=77, Evalue=2e-15,
Organism=Escherichia coli, GI87081791, Length=209, Percent_Identity=24.4019138755981, Blast_Score=76, Evalue=3e-15,
Organism=Escherichia coli, GI1787029, Length=206, Percent_Identity=26.2135922330097, Blast_Score=76, Evalue=4e-15,
Organism=Escherichia coli, GI1786803, Length=220, Percent_Identity=25.9090909090909, Blast_Score=76, Evalue=5e-15,
Organism=Escherichia coli, GI1788450, Length=203, Percent_Identity=25.1231527093596, Blast_Score=75, Evalue=6e-15,
Organism=Escherichia coli, GI1787089, Length=213, Percent_Identity=24.4131455399061, Blast_Score=75, Evalue=1e-14,
Organism=Escherichia coli, GI1788225, Length=216, Percent_Identity=25, Blast_Score=74, Evalue=1e-14,
Organism=Escherichia coli, GI1789032, Length=248, Percent_Identity=23.3870967741935, Blast_Score=73, Evalue=3e-14,
Organism=Escherichia coli, GI87081834, Length=204, Percent_Identity=28.4313725490196, Blast_Score=73, Evalue=3e-14,
Organism=Escherichia coli, GI87081782, Length=210, Percent_Identity=22.8571428571429, Blast_Score=73, Evalue=4e-14,
Organism=Escherichia coli, GI1790467, Length=205, Percent_Identity=25.8536585365854, Blast_Score=72, Evalue=5e-14,
Organism=Escherichia coli, GI1786319, Length=236, Percent_Identity=25, Blast_Score=72, Evalue=5e-14,
Organism=Escherichia coli, GI1789751, Length=270, Percent_Identity=27.7777777777778, Blast_Score=71, Evalue=1e-13,
Organism=Escherichia coli, GI1786398, Length=208, Percent_Identity=25.4807692307692, Blast_Score=69, Evalue=5e-13,
Organism=Escherichia coli, GI87082267, Length=204, Percent_Identity=26.4705882352941, Blast_Score=69, Evalue=5e-13,
Organism=Escherichia coli, GI1788210, Length=211, Percent_Identity=27.9620853080569, Blast_Score=68, Evalue=1e-12,
Organism=Escherichia coli, GI1787712, Length=209, Percent_Identity=24.8803827751196, Blast_Score=66, Evalue=4e-12,
Organism=Escherichia coli, GI1788897, Length=210, Percent_Identity=21.9047619047619, Blast_Score=62, Evalue=6e-11,
Organism=Caenorhabditis elegans, GI115533608, Length=236, Percent_Identity=27.5423728813559, Blast_Score=85, Evalue=9e-17,
Organism=Caenorhabditis elegans, GI17565586, Length=189, Percent_Identity=29.1005291005291, Blast_Score=80, Evalue=2e-15,
Organism=Caenorhabditis elegans, GI115535101, Length=245, Percent_Identity=27.3469387755102, Blast_Score=70, Evalue=3e-12,
Organism=Caenorhabditis elegans, GI71983523, Length=203, Percent_Identity=25.1231527093596, Blast_Score=67, Evalue=1e-11,
Organism=Caenorhabditis elegans, GI71983516, Length=203, Percent_Identity=25.1231527093596, Blast_Score=67, Evalue=2e-11,
Organism=Caenorhabditis elegans, GI71983510, Length=203, Percent_Identity=25.1231527093596, Blast_Score=67, Evalue=2e-11,
Organism=Caenorhabditis elegans, GI17567265, Length=222, Percent_Identity=29.7297297297297, Blast_Score=67, Evalue=2e-11,
Organism=Caenorhabditis elegans, GI71992066, Length=207, Percent_Identity=28.5024154589372, Blast_Score=65, Evalue=9e-11,
Organism=Caenorhabditis elegans, GI71992070, Length=207, Percent_Identity=28.5024154589372, Blast_Score=65, Evalue=9e-11,
Organism=Caenorhabditis elegans, GI17567269, Length=224, Percent_Identity=26.3392857142857, Blast_Score=65, Evalue=9e-11,
Organism=Caenorhabditis elegans, GI25146765, Length=207, Percent_Identity=28.5024154589372, Blast_Score=65, Evalue=9e-11,
Organism=Caenorhabditis elegans, GI86564969, Length=207, Percent_Identity=28.5024154589372, Blast_Score=65, Evalue=1e-10,
Organism=Saccharomyces cerevisiae, GI6323278, Length=179, Percent_Identity=29.608938547486, Blast_Score=64, Evalue=5e-11,
Organism=Drosophila melanogaster, GI116007184, Length=237, Percent_Identity=25.3164556962025, Blast_Score=91, Evalue=2e-18,
Organism=Drosophila melanogaster, GI221500365, Length=237, Percent_Identity=25.3164556962025, Blast_Score=91, Evalue=2e-18,
Organism=Drosophila melanogaster, GI24666092, Length=207, Percent_Identity=28.5024154589372, Blast_Score=89, Evalue=5e-18,
Organism=Drosophila melanogaster, GI281362751, Length=218, Percent_Identity=30.7339449541284, Blast_Score=82, Evalue=5e-16,
Organism=Drosophila melanogaster, GI24650853, Length=218, Percent_Identity=30.7339449541284, Blast_Score=81, Evalue=1e-15,
Organism=Drosophila melanogaster, GI24650855, Length=218, Percent_Identity=30.7339449541284, Blast_Score=80, Evalue=2e-15,
Organism=Drosophila melanogaster, GI24643674, Length=270, Percent_Identity=23.7037037037037, Blast_Score=76, Evalue=5e-14,
Organism=Drosophila melanogaster, GI28574150, Length=210, Percent_Identity=23.8095238095238, Blast_Score=73, Evalue=4e-13,
Organism=Drosophila melanogaster, GI116007328, Length=210, Percent_Identity=23.8095238095238, Blast_Score=72, Evalue=5e-13,
Organism=Drosophila melanogaster, GI221512771, Length=211, Percent_Identity=23.696682464455, Blast_Score=71, Evalue=1e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003439
- InterPro:   IPR003593 [H]

Pfam domain/function: PF00005 ABC_tran [H]

EC number: 3.6.3.30 [C]

Molecular weight: Translated: 48138; Mature: 48138

Theoretical pI: Translated: 4.87; Mature: 4.87

Prosite motif: PS50893 ABC_TRANSPORTER_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLNNENSIEVRNVSKSFKVYFDKGNELKEKMLFWKRNRYENRVVLNNISFTVKKGEAVGL
CCCCCCCEEEEECCCEEEEEECCCCHHHHHHHHHHHCCCCCEEEEEEEEEEEECCCEEEE
IGRNGCGKSTTLKLLTKIIYPDSGSIEMCGRVSSLLELGAGFHPDMSGRENIYTNAAIFG
EECCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCEEECEEEEE
LTKKEIDERLEDIIEFSELQQFIDNPVRTYSSGMYMRLAFSVAINVNADILLIDEILAVG
CCHHHHHHHHHHHHHHHHHHHHHCCHHHHHCCCEEEEEEEEEEEECCCCEEEEEHHHHHC
DANFQAKCFNKLREIKANGTTIIIVSHALGQIEEICDKSIWIKDGQIEQEGDPREVDIAY
CCCCHHHHHHHHHHHCCCCCEEEEECHHHHHHHHHHCCCEEEECCEECCCCCCCEEEEHH
LDYMNQERLSKDEQERARILRIEAEQRRLKKAEEENKEGGNDKRYGSFEARINDVILSCD
HHHCCHHHCCCCHHHHHHEEEEEHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEEEEEECC
DGNRTETLETGRKAVIEIDYSVETPVKEVHARYMIYRIDGQLCSGSSTKIDRLDAFDLEK
CCCCCCHHHCCCEEEEEEECCCCCCHHHHHHEEEEEEECCEEECCCCCCCCCCCCCCCCC
DGKIVIEFDSMTLTRSQYWVDIVLEKADGTPIDYYKEAARFNVVSGIEDMGVARIEHTWK
CCEEEEEECCEEEECCCEEEEEEEECCCCCCHHHHHHHHHHHHHHCHHHHCHHHHHHHHC
NC
CC
>Mature Secondary Structure
MLNNENSIEVRNVSKSFKVYFDKGNELKEKMLFWKRNRYENRVVLNNISFTVKKGEAVGL
CCCCCCCEEEEECCCEEEEEECCCCHHHHHHHHHHHCCCCCEEEEEEEEEEEECCCEEEE
IGRNGCGKSTTLKLLTKIIYPDSGSIEMCGRVSSLLELGAGFHPDMSGRENIYTNAAIFG
EECCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCEEECEEEEE
LTKKEIDERLEDIIEFSELQQFIDNPVRTYSSGMYMRLAFSVAINVNADILLIDEILAVG
CCHHHHHHHHHHHHHHHHHHHHHCCHHHHHCCCEEEEEEEEEEEECCCCEEEEEHHHHHC
DANFQAKCFNKLREIKANGTTIIIVSHALGQIEEICDKSIWIKDGQIEQEGDPREVDIAY
CCCCHHHHHHHHHHHCCCCCEEEEECHHHHHHHHHHCCCEEEECCEECCCCCCCEEEEHH
LDYMNQERLSKDEQERARILRIEAEQRRLKKAEEENKEGGNDKRYGSFEARINDVILSCD
HHHCCHHHCCCCHHHHHHEEEEEHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEEEEEECC
DGNRTETLETGRKAVIEIDYSVETPVKEVHARYMIYRIDGQLCSGSSTKIDRLDAFDLEK
CCCCCCHHHCCCEEEEEEECCCCCCHHHHHHEEEEEEECCEEECCCCCCCCCCCCCCCCC
DGKIVIEFDSMTLTRSQYWVDIVLEKADGTPIDYYKEAARFNVVSGIEDMGVARIEHTWK
CCEEEEEECCEEEECCCEEEEEEEECCCCCCHHHHHHHHHHHHHHCHHHHCHHHHHHHHC
NC
CC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8626291 [H]