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The map label for this gene is yabB [H]

Identifier: 238915995

GI number: 238915995

Start: 26817

End: 27536

Strand: Direct

Name: yabB [H]

Synonym: EUBELI_00028

Alternate gene names: 238915995

Gene position: 26817-27536 (Clockwise)

Preceding gene: 238915994

Following gene: 238915996

Centisome position: 1.25

GC content: 40.97

Gene sequence:

>720_bases
ATGATTAATGAACGAATTGATGATTTGATGAGAGATGGACTAAAGCTTATACAGAATACAGATATTTTCTGTTTTGGAAT
GGACGCAGTGCTGTTGTCTACTTATGCCATGGCAGGGAAGAAAGACAGGGTGCTGGACATGGGTACAGGTAATGGTATTA
TTCCGGTGCTTATGCAGTCTAAGAATCCAGGTAGCACATACAGTGCTCTTGAGATTCAGGAGGGAAGCGCACAGCTTGCC
AGAAGAAATGTGGAGCTTAATCATCTTGAGGACAGAATCAGTGTTGTTAAGGGTGATATTAAGGAAGCTTCCACTATATT
TGGGGAAGCTTCTTTTAATGTTGTGACGAGCAATCCGCCATATATGAATGAAAATCACGGTATTGTTAATCCGGACAGTG
CCAAGGCAATTGCAAGGCATGAGCTTCTGTGTAGTCTTGATGATGTTATAAGGGAAGCAAGCCGTTGTCTTAAATCTAAA
GGGAAAATGTATATGGTTCACAGACCGAACAGACTTGTTGATATATTTGACACTATGAGAAAGTATCATCTTGAGCCGAA
GAGAATGAGGCTGGTGTATCCTTATGTGAATAAGGCTGCCAATATGGTGCTTATAGAAGCGGTTAAGGGTGGTAATTCCC
AGCTTATAGTTGAAGAACCGCTTATTGTATACAAGACGGACGGTACTTACACTGATGCGCTTCTAAAAATGTATGAATAG

Upstream 100 bases:

>100_bases
AAGAGAAAAAGAAGATTTGATAAGGTCAGAATTGATGATGATAAGGAACTTAAGGCACTTGAGGAATTAGAAAGAAAAGA
AGGAAAAGCCCATATTAGTG

Downstream 100 bases:

>100_bases
ATAGAGGTTTATTATGGATAATGAAAAAAATGTAAAGAAAGACGGACCGGGTATGCTGTATCTGTGTGCAACGCCTATTG
GTAATCTTGAGGATATTACT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 239; Mature: 239

Protein sequence:

>239_residues
MINERIDDLMRDGLKLIQNTDIFCFGMDAVLLSTYAMAGKKDRVLDMGTGNGIIPVLMQSKNPGSTYSALEIQEGSAQLA
RRNVELNHLEDRISVVKGDIKEASTIFGEASFNVVTSNPPYMNENHGIVNPDSAKAIARHELLCSLDDVIREASRCLKSK
GKMYMVHRPNRLVDIFDTMRKYHLEPKRMRLVYPYVNKAANMVLIEAVKGGNSQLIVEEPLIVYKTDGTYTDALLKMYE

Sequences:

>Translated_239_residues
MINERIDDLMRDGLKLIQNTDIFCFGMDAVLLSTYAMAGKKDRVLDMGTGNGIIPVLMQSKNPGSTYSALEIQEGSAQLA
RRNVELNHLEDRISVVKGDIKEASTIFGEASFNVVTSNPPYMNENHGIVNPDSAKAIARHELLCSLDDVIREASRCLKSK
GKMYMVHRPNRLVDIFDTMRKYHLEPKRMRLVYPYVNKAANMVLIEAVKGGNSQLIVEEPLIVYKTDGTYTDALLKMYE
>Mature_239_residues
MINERIDDLMRDGLKLIQNTDIFCFGMDAVLLSTYAMAGKKDRVLDMGTGNGIIPVLMQSKNPGSTYSALEIQEGSAQLA
RRNVELNHLEDRISVVKGDIKEASTIFGEASFNVVTSNPPYMNENHGIVNPDSAKAIARHELLCSLDDVIREASRCLKSK
GKMYMVHRPNRLVDIFDTMRKYHLEPKRMRLVYPYVNKAANMVLIEAVKGGNSQLIVEEPLIVYKTDGTYTDALLKMYE

Specific function: Unknown

COG id: COG4123

COG function: function code R; Predicted O-methyltransferase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR007848 [H]

Pfam domain/function: PF05175 MTS [H]

EC number: NA

Molecular weight: Translated: 26862; Mature: 26862

Theoretical pI: Translated: 7.04; Mature: 7.04

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
5.4 %Met     (Translated Protein)
6.7 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
5.4 %Met     (Mature Protein)
6.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MINERIDDLMRDGLKLIQNTDIFCFGMDAVLLSTYAMAGKKDRVLDMGTGNGIIPVLMQS
CCCHHHHHHHHHHHHHHHCCCEEEEEHHHHHHHHHHHCCCCCCEEEECCCCCEEEEEEEC
KNPGSTYSALEIQEGSAQLARRNVELNHLEDRISVVKGDIKEASTIFGEASFNVVTSNPP
CCCCCCEEEEEEECCHHHHHHCCCCHHHHHHHHHHHHCCHHHHHHHHCCCEEEEEECCCC
YMNENHGIVNPDSAKAIARHELLCSLDDVIREASRCLKSKGKMYMVHRPNRLVDIFDTMR
CCCCCCCEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHH
KYHLEPKRMRLVYPYVNKAANMVLIEAVKGGNSQLIVEEPLIVYKTDGTYTDALLKMYE
HHCCCHHHEEEECHHHCCCCCEEEEEEECCCCCEEEEECCEEEEECCCCHHHHHHHHCC
>Mature Secondary Structure
MINERIDDLMRDGLKLIQNTDIFCFGMDAVLLSTYAMAGKKDRVLDMGTGNGIIPVLMQS
CCCHHHHHHHHHHHHHHHCCCEEEEEHHHHHHHHHHHCCCCCCEEEECCCCCEEEEEEEC
KNPGSTYSALEIQEGSAQLARRNVELNHLEDRISVVKGDIKEASTIFGEASFNVVTSNPP
CCCCCCEEEEEEECCHHHHHHCCCCHHHHHHHHHHHHCCHHHHHHHHCCCEEEEEECCCC
YMNENHGIVNPDSAKAIARHELLCSLDDVIREASRCLKSKGKMYMVHRPNRLVDIFDTMR
CCCCCCCEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHH
KYHLEPKRMRLVYPYVNKAANMVLIEAVKGGNSQLIVEEPLIVYKTDGTYTDALLKMYE
HHCCCHHHEEEECHHHCCCCCEEEEEEECCCCCEEEEECCEEEEECCCCHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7584024; 9384377 [H]