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The map label for this gene is yidC [H]

Identifier: 238897216

GI number: 238897216

Start: 5215506

End: 5217152

Strand: Direct

Name: yidC [H]

Synonym: KP1_5487

Alternate gene names: 238897216

Gene position: 5215506-5217152 (Clockwise)

Preceding gene: 238897215

Following gene: 238897217

Centisome position: 99.37

GC content: 56.04

Gene sequence:

>1647_bases
ATGGATTCGCAACGCAATCTTCTTATCATCGCTTTGTTGTTCGTGTCTTTCATGATCTGGCAAGCCTGGGAGCAGGACAA
AAATCCGCAGCCCCAGCAGCAGACCACGCAGACTACGACCACAGCAGCGGGTAGCGCCGCCGACCAGGGCGTACCGGCCA
GTGGCCAGGGGAAACTGATTACGGTTAAAACCGACGTGCTTGAGCTGACTATCAACACCAACGGTGGCGATATTGAGCAG
GCGCTGCTTCTGGCGTATCCAAAAACGCTGAAATCGACCGAACCGTTCCAGTTACTGGAAACCACGCCGCAGTTTGTCTA
CCAGGCGCAGAGCGGCTTAACCGGCCGTGACGGTCCGGATAACCCGGCAAACGGCCCGCGTCCGCTGTACAACGTCGATA
AAGAGGCGTTTGTGCTGGCCGATGGCCAGGATGAGCTCGTTATCCCGCTGACCTACACTGACAAAGCCGGCAACGTCTTC
ACCAAAACCTTCACCCTGAAGCGCGGTGGCTATGCGGTGAACGTGGGTTACAGCGTGCAGAATGCCAGCGAGAAGCCTCT
GGAAGTCTCAACCTTCGGTCAGCTGAAGCAGACCGCTGCGCTGCCGACCAGTCGCGATACGCAGACCGGTGGCCTGTCCA
CGATGCATACTTTCCGTGGCGCCGCGTTCTCCACTGCGGATTCGAAATACGAGAAATATAAATTCGATACCATTCTGGAT
AACGAAAACCTGAACGTCAGCACCAAAAACGGTTGGGTTGCCATGCTGCAGCAGTACTTCACCACCGCATGGGTGCCGCG
GAATAACGGGACGAATAACTTCTACACCGCCAACCTCGGCAACGGCGTTGTCGCTATTGGCTACAAATCGCAGCCGGTAC
TGGTGCAGCCAGGCCAGACCGACAAACTGCAGAGCACGCTGTGGGTCGGCCCGGCTATTCAGGACAAAATGGCTGCCGTT
GCGCCGCACCTGGATCTGACCGTCGACTACGGCTGGCTGTGGTTCATCTCCCAACCGCTGTTCAAGCTGCTGAAATTCAT
CCACAGCTTCCTCGGCAACTGGGGCTTCTCGATCATCGTTATCACCTTTATCGTTCGTGGCATCATGTACCCGCTGACCA
AAGCGCAGTACACCTCCATGGCGAAGATGCGCATGCTGCAGCCGAAGATTCAGGCCATGCGTGAGCGTCTGGGCGACGAT
AAACAACGTCAAAGCCAGGAGATGATGGCGCTGTATAAAGCGGAAAAAGTAAACCCGCTGGGCGGCTGCTTCCCGCTGAT
TATTCAGATGCCGATCTTCCTTGCGCTGTACTACATGCTGAGCGCCTCGGTTGAACTGCGTCATGCGCCGTTTATCCTGT
GGATCCACGACCTGTCTGCTCAGGACCCGTACTACATCCTGCCGATCATCATGGGCGCGACCATGTTCTTCATCCAGAAG
ATGTCGCCGACCACCGTGACCGACCCGATGCAGCAGAAGATCATGACCTTTATGCCGGTCATCTTCACGGTGTTCTTCCT
GTGGTTCCCGTCTGGCCTGGTGGTGTACTACATCGTCAGCAACCTGGTCACCATTATTCAGCAGCAGCTGATTTACCGTG
GTCTGGAGAAACGTGGCCTGCATAGCCGCGAGAAGAAGAAATCCTGA

Upstream 100 bases:

>100_bases
GTTGGTTGACGATGAAACGCGTATTAAAATGCCACCCTTTACACCCTGGTGGTGACGATCCCGTCCCGCCTGGACCATTT
GATACCAGAGAACACTAACG

Downstream 100 bases:

>100_bases
TACTCTTCATTCTTCAAGCCAACGCATCTGCGACTTGGATAATTTAGAGTAGTTACGGTAACGTTAATGCCAGAGAAGGC
GGTCAATGGACCGCCTTTTT

Product: putative inner membrane protein translocase component YidC

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 548; Mature: 548

Protein sequence:

>548_residues
MDSQRNLLIIALLFVSFMIWQAWEQDKNPQPQQQTTQTTTTAAGSAADQGVPASGQGKLITVKTDVLELTINTNGGDIEQ
ALLLAYPKTLKSTEPFQLLETTPQFVYQAQSGLTGRDGPDNPANGPRPLYNVDKEAFVLADGQDELVIPLTYTDKAGNVF
TKTFTLKRGGYAVNVGYSVQNASEKPLEVSTFGQLKQTAALPTSRDTQTGGLSTMHTFRGAAFSTADSKYEKYKFDTILD
NENLNVSTKNGWVAMLQQYFTTAWVPRNNGTNNFYTANLGNGVVAIGYKSQPVLVQPGQTDKLQSTLWVGPAIQDKMAAV
APHLDLTVDYGWLWFISQPLFKLLKFIHSFLGNWGFSIIVITFIVRGIMYPLTKAQYTSMAKMRMLQPKIQAMRERLGDD
KQRQSQEMMALYKAEKVNPLGGCFPLIIQMPIFLALYYMLSASVELRHAPFILWIHDLSAQDPYYILPIIMGATMFFIQK
MSPTTVTDPMQQKIMTFMPVIFTVFFLWFPSGLVVYYIVSNLVTIIQQQLIYRGLEKRGLHSREKKKS

Sequences:

>Translated_548_residues
MDSQRNLLIIALLFVSFMIWQAWEQDKNPQPQQQTTQTTTTAAGSAADQGVPASGQGKLITVKTDVLELTINTNGGDIEQ
ALLLAYPKTLKSTEPFQLLETTPQFVYQAQSGLTGRDGPDNPANGPRPLYNVDKEAFVLADGQDELVIPLTYTDKAGNVF
TKTFTLKRGGYAVNVGYSVQNASEKPLEVSTFGQLKQTAALPTSRDTQTGGLSTMHTFRGAAFSTADSKYEKYKFDTILD
NENLNVSTKNGWVAMLQQYFTTAWVPRNNGTNNFYTANLGNGVVAIGYKSQPVLVQPGQTDKLQSTLWVGPAIQDKMAAV
APHLDLTVDYGWLWFISQPLFKLLKFIHSFLGNWGFSIIVITFIVRGIMYPLTKAQYTSMAKMRMLQPKIQAMRERLGDD
KQRQSQEMMALYKAEKVNPLGGCFPLIIQMPIFLALYYMLSASVELRHAPFILWIHDLSAQDPYYILPIIMGATMFFIQK
MSPTTVTDPMQQKIMTFMPVIFTVFFLWFPSGLVVYYIVSNLVTIIQQQLIYRGLEKRGLHSREKKKS
>Mature_548_residues
MDSQRNLLIIALLFVSFMIWQAWEQDKNPQPQQQTTQTTTTAAGSAADQGVPASGQGKLITVKTDVLELTINTNGGDIEQ
ALLLAYPKTLKSTEPFQLLETTPQFVYQAQSGLTGRDGPDNPANGPRPLYNVDKEAFVLADGQDELVIPLTYTDKAGNVF
TKTFTLKRGGYAVNVGYSVQNASEKPLEVSTFGQLKQTAALPTSRDTQTGGLSTMHTFRGAAFSTADSKYEKYKFDTILD
NENLNVSTKNGWVAMLQQYFTTAWVPRNNGTNNFYTANLGNGVVAIGYKSQPVLVQPGQTDKLQSTLWVGPAIQDKMAAV
APHLDLTVDYGWLWFISQPLFKLLKFIHSFLGNWGFSIIVITFIVRGIMYPLTKAQYTSMAKMRMLQPKIQAMRERLGDD
KQRQSQEMMALYKAEKVNPLGGCFPLIIQMPIFLALYYMLSASVELRHAPFILWIHDLSAQDPYYILPIIMGATMFFIQK
MSPTTVTDPMQQKIMTFMPVIFTVFFLWFPSGLVVYYIVSNLVTIIQQQLIYRGLEKRGLHSREKKKS

Specific function: Required for the insertion of integral membrane proteins into the membrane. Probably plays an essential role in the integration of proteins of the respiratory chain complexes. Involved in integration of membrane proteins that insert dependently and indepe

COG id: COG0706

COG function: function code U; Preprotein translocase subunit YidC

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the OXA1/oxaA family. Type 1 subfamily [H]

Homologues:

Organism=Homo sapiens, GI223718097, Length=207, Percent_Identity=27.536231884058, Blast_Score=70, Evalue=5e-12,
Organism=Escherichia coli, GI1790140, Length=549, Percent_Identity=85.792349726776, Blast_Score=962, Evalue=0.0,
Organism=Drosophila melanogaster, GI24662345, Length=205, Percent_Identity=25.8536585365854, Blast_Score=82, Evalue=8e-16,
Organism=Drosophila melanogaster, GI21356443, Length=205, Percent_Identity=25.8536585365854, Blast_Score=82, Evalue=8e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR019998
- InterPro:   IPR001708 [H]

Pfam domain/function: PF02096 60KD_IMP [H]

EC number: NA

Molecular weight: Translated: 61465; Mature: 61465

Theoretical pI: Translated: 9.43; Mature: 9.43

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
3.6 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
3.6 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDSQRNLLIIALLFVSFMIWQAWEQDKNPQPQQQTTQTTTTAAGSAADQGVPASGQGKLI
CCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCEE
TVKTDVLELTINTNGGDIEQALLLAYPKTLKSTEPFQLLETTPQFVYQAQSGLTGRDGPD
EEEEEEEEEEEECCCCCHHHHHHHHCCHHHCCCCCHHHHHCCHHHHHHHHCCCCCCCCCC
NPANGPRPLYNVDKEAFVLADGQDELVIPLTYTDKAGNVFTKTFTLKRGGYAVNVGYSVQ
CCCCCCCCCCCCCCCEEEEECCCCCEEEEEEEECCCCCEEEEEEEEECCCEEEEECEEEC
NASEKPLEVSTFGQLKQTAALPTSRDTQTGGLSTMHTFRGAAFSTADSKYEKYKFDTILD
CCCCCCEEEHHHHHHHHHHCCCCCCCCCCCCCHHHHHHCCCCCCCCCCHHHHEECCEEEC
NENLNVSTKNGWVAMLQQYFTTAWVPRNNGTNNFYTANLGNGVVAIGYKSQPVLVQPGQT
CCCCEEECCCCHHHHHHHHHHHEEEECCCCCCCEEEEECCCCEEEEEECCCCEEECCCCC
DKLQSTLWVGPAIQDKMAAVAPHLDLTVDYGWLWFISQPLFKLLKFIHSFLGNWGFSIIV
CHHHHHEEECCCHHHHHHHHCCCCEEEECCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHH
ITFIVRGIMYPLTKAQYTSMAKMRMLQPKIQAMRERLGDDKQRQSQEMMALYKAEKVNPL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCC
GGCFPLIIQMPIFLALYYMLSASVELRHAPFILWIHDLSAQDPYYILPIIMGATMFFIQK
CCHHHHHHHHHHHHHHHHHHHCCCEEECCCEEEEEECCCCCCCEEEHHHHHHHHHHHHHH
MSPTTVTDPMQQKIMTFMPVIFTVFFLWFPSGLVVYYIVSNLVTIIQQQLIYRGLEKRGL
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
HSREKKKS
CCHHHCCC
>Mature Secondary Structure
MDSQRNLLIIALLFVSFMIWQAWEQDKNPQPQQQTTQTTTTAAGSAADQGVPASGQGKLI
CCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCEE
TVKTDVLELTINTNGGDIEQALLLAYPKTLKSTEPFQLLETTPQFVYQAQSGLTGRDGPD
EEEEEEEEEEEECCCCCHHHHHHHHCCHHHCCCCCHHHHHCCHHHHHHHHCCCCCCCCCC
NPANGPRPLYNVDKEAFVLADGQDELVIPLTYTDKAGNVFTKTFTLKRGGYAVNVGYSVQ
CCCCCCCCCCCCCCCEEEEECCCCCEEEEEEEECCCCCEEEEEEEEECCCEEEEECEEEC
NASEKPLEVSTFGQLKQTAALPTSRDTQTGGLSTMHTFRGAAFSTADSKYEKYKFDTILD
CCCCCCEEEHHHHHHHHHHCCCCCCCCCCCCCHHHHHHCCCCCCCCCCHHHHEECCEEEC
NENLNVSTKNGWVAMLQQYFTTAWVPRNNGTNNFYTANLGNGVVAIGYKSQPVLVQPGQT
CCCCEEECCCCHHHHHHHHHHHEEEECCCCCCCEEEEECCCCEEEEEECCCCEEECCCCC
DKLQSTLWVGPAIQDKMAAVAPHLDLTVDYGWLWFISQPLFKLLKFIHSFLGNWGFSIIV
CHHHHHEEECCCHHHHHHHHCCCCEEEECCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHH
ITFIVRGIMYPLTKAQYTSMAKMRMLQPKIQAMRERLGDDKQRQSQEMMALYKAEKVNPL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCC
GGCFPLIIQMPIFLALYYMLSASVELRHAPFILWIHDLSAQDPYYILPIIMGATMFFIQK
CCHHHHHHHHHHHHHHHHHHHCCCEEECCCEEEEEECCCCCCCEEEHHHHHHHHHHHHHH
MSPTTVTDPMQQKIMTFMPVIFTVFFLWFPSGLVVYYIVSNLVTIIQQQLIYRGLEKRGL
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
HSREKKKS
CCHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: NA