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The map label for this gene is ykgD [C]

Identifier: 238897135

GI number: 238897135

Start: 5133632

End: 5134561

Strand: Reverse

Name: ykgD [C]

Synonym: KP1_5395

Alternate gene names: 238897135

Gene position: 5134561-5133632 (Counterclockwise)

Preceding gene: 238897137

Following gene: 238897134

Centisome position: 97.83

GC content: 67.31

Gene sequence:

>930_bases
TTGTCTTATCGTCTCAGGAGAAGCATGGACAGTCTCAGTCATCTGCTGGCGCTGCTGGCGCCGCGCTGCGAAGTGAACCT
GCACTGTCGCTTCGGCGGCCGCTGGCAGGCCGGGCACCAGCAAATGCGCAGCGGCGTGGTGCCCTGGCACGTGGTGCTGC
GCGGCGAGGGGCGGCTCAACGTCGGCGGCCAGACCCATCACCTGCGCGCGGGAGATGTCGTCCTCCTGCCCCACGGTTCG
CCGCACCTGATGGAGAGCCTGGTGGAGTGGGGCCAGGTGCTGCCGGTGGCGCACCGGTTTAACGGCACGGTGACGGAAAT
GCGCGCCGGCCCGGCGGAGGGGGCGCTGGAGATGCTGTGCGGCGAATTCTATTTTGGTCCGCACGTCAGCTGGCTGTTCA
GTGAAGCATCGACGCTGATCCATCTCCATACCGATGCGCGTGAAGACTGCCCGGAGCTGGACGCGCTGCTTAATATACTG
GTGCGCGAGAGCCTGGCGCAGCGTCCCGGCGGCAGCGCTATCGTGCGCAGCCTCGGCGATACGCTGCTGGTGCTCCTGCT
GCGCATGCTGCTTGGCGAGCAACAGCCGCCCGGCGGGCTGCTGCGCCTGATGAGCGATGAACGCCTGATGCCGGCGGTGC
TGGCGGTGATGGCGACCCCGGAGCAACCGTGGACGCTGGAGAGTATGGCCGCCCGTGCCTTTCTGTCGCGGGCCACCTTC
GCCCGTCATTTTGCCCGCGTTTATCACCTGACGCCGCAGGCGTGGCTGTCGCAGCTGCGAATGGCGCTGGCCGCCCGGCT
GCTGCGCCTGGAGCGTCAGACCAACCTCGAGGTCATTGCCGAACGCTGCGGCTTTCAGTCGCTGGCGTCCTTCTCGAAGC
GCTTCAAAATGCGCTATGGCGTGACGCCGGGCGAGTGGCGCCGGGGCTAG

Upstream 100 bases:

>100_bases
CGGCTCATGGTTAACTCCTGTTGTTATCGAGGGTGTGTTGGCAATGGGGTCATCTTAGGCGCTTGCCGCATGCTAGACTG
GCGGTCTTCGTCTCACCTTT

Downstream 100 bases:

>100_bases
CGCCTCGCGTTTCGCGAAGATGATTTTATTTCCAGTTGCGTGGTTTGCTGTTTATTACCCGACCCGAAAGTCGCTATAGT
TTTGCACGAAAAAAAACAAT

Product: putative AraC-type regulatory protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 309; Mature: 308

Protein sequence:

>309_residues
MSYRLRRSMDSLSHLLALLAPRCEVNLHCRFGGRWQAGHQQMRSGVVPWHVVLRGEGRLNVGGQTHHLRAGDVVLLPHGS
PHLMESLVEWGQVLPVAHRFNGTVTEMRAGPAEGALEMLCGEFYFGPHVSWLFSEASTLIHLHTDAREDCPELDALLNIL
VRESLAQRPGGSAIVRSLGDTLLVLLLRMLLGEQQPPGGLLRLMSDERLMPAVLAVMATPEQPWTLESMAARAFLSRATF
ARHFARVYHLTPQAWLSQLRMALAARLLRLERQTNLEVIAERCGFQSLASFSKRFKMRYGVTPGEWRRG

Sequences:

>Translated_309_residues
MSYRLRRSMDSLSHLLALLAPRCEVNLHCRFGGRWQAGHQQMRSGVVPWHVVLRGEGRLNVGGQTHHLRAGDVVLLPHGS
PHLMESLVEWGQVLPVAHRFNGTVTEMRAGPAEGALEMLCGEFYFGPHVSWLFSEASTLIHLHTDAREDCPELDALLNIL
VRESLAQRPGGSAIVRSLGDTLLVLLLRMLLGEQQPPGGLLRLMSDERLMPAVLAVMATPEQPWTLESMAARAFLSRATF
ARHFARVYHLTPQAWLSQLRMALAARLLRLERQTNLEVIAERCGFQSLASFSKRFKMRYGVTPGEWRRG
>Mature_308_residues
SYRLRRSMDSLSHLLALLAPRCEVNLHCRFGGRWQAGHQQMRSGVVPWHVVLRGEGRLNVGGQTHHLRAGDVVLLPHGSP
HLMESLVEWGQVLPVAHRFNGTVTEMRAGPAEGALEMLCGEFYFGPHVSWLFSEASTLIHLHTDAREDCPELDALLNILV
RESLAQRPGGSAIVRSLGDTLLVLLLRMLLGEQQPPGGLLRLMSDERLMPAVLAVMATPEQPWTLESMAARAFLSRATFA
RHFARVYHLTPQAWLSQLRMALAARLLRLERQTNLEVIAERCGFQSLASFSKRFKMRYGVTPGEWRRG

Specific function: Unknown

COG id: COG2207

COG function: function code K; AraC-type DNA-binding domain-containing proteins

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1786496, Length=302, Percent_Identity=30.4635761589404, Blast_Score=121, Evalue=5e-29,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR003313
- InterPro:   IPR018062
- InterPro:   IPR020449
- InterPro:   IPR018060 [H]

Pfam domain/function: PF02311 AraC_binding; PF00165 HTH_AraC [H]

EC number: NA

Molecular weight: Translated: 34675; Mature: 34544

Theoretical pI: Translated: 9.71; Mature: 9.71

Prosite motif: PS00041 HTH_ARAC_FAMILY_1 ; PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
4.2 %Met     (Translated Protein)
5.8 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
3.9 %Met     (Mature Protein)
5.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSYRLRRSMDSLSHLLALLAPRCEVNLHCRFGGRWQAGHQQMRSGVVPWHVVLRGEGRLN
CCCHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCHHHHHHHHCCCCCEEEEEECCCEEE
VGGQTHHLRAGDVVLLPHGSPHLMESLVEWGQVLPVAHRFNGTVTEMRAGPAEGALEMLC
CCCCEEEEECCCEEEECCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHCCCCCHHHHHHHH
GEFYFGPHVSWLFSEASTLIHLHTDAREDCPELDALLNILVRESLAQRPGGSAIVRSLGD
HHHCCCCCHHHHHHCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHH
TLLVLLLRMLLGEQQPPGGLLRLMSDERLMPAVLAVMATPEQPWTLESMAARAFLSRATF
HHHHHHHHHHHCCCCCCCHHHHHHCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHH
ARHFARVYHLTPQAWLSQLRMALAARLLRLERQTNLEVIAERCGFQSLASFSKRFKMRYG
HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCHHHHHHHHHHHHHHCC
VTPGEWRRG
CCCCCCCCC
>Mature Secondary Structure 
SYRLRRSMDSLSHLLALLAPRCEVNLHCRFGGRWQAGHQQMRSGVVPWHVVLRGEGRLN
CCHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCHHHHHHHHCCCCCEEEEEECCCEEE
VGGQTHHLRAGDVVLLPHGSPHLMESLVEWGQVLPVAHRFNGTVTEMRAGPAEGALEMLC
CCCCEEEEECCCEEEECCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHCCCCCHHHHHHHH
GEFYFGPHVSWLFSEASTLIHLHTDAREDCPELDALLNILVRESLAQRPGGSAIVRSLGD
HHHCCCCCHHHHHHCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHH
TLLVLLLRMLLGEQQPPGGLLRLMSDERLMPAVLAVMATPEQPWTLESMAARAFLSRATF
HHHHHHHHHHHCCCCCCCHHHHHHCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHH
ARHFARVYHLTPQAWLSQLRMALAARLLRLERQTNLEVIAERCGFQSLASFSKRFKMRYG
HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCHHHHHHHHHHHHHHCC
VTPGEWRRG
CCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]