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The map label for this gene is yddR [H]

Identifier: 238897131

GI number: 238897131

Start: 5130320

End: 5131099

Strand: Reverse

Name: yddR [H]

Synonym: KP1_5391

Alternate gene names: 238897131

Gene position: 5131099-5130320 (Counterclockwise)

Preceding gene: 238897133

Following gene: 238897130

Centisome position: 97.76

GC content: 60.26

Gene sequence:

>780_bases
ATGAACATCACCCACATCCGTAATGCGACCCAGATTATTGACTACGCCGGGAAAAGATTTCTCATCGATCCGATGCTGGC
GGACAAAGGCGCCTGGCCGGGTTTTCCGGGCACCGCGCGCAGCGAATTGCGCAATCCGCTGGTTGAGCTGCCGTTTTCCC
GCGATAAAATTATCGACGTTGATGCGGTGATCGTCACCCATACCCATGACGATCACTGGGACGCGGCGGCGATCGCCGCG
ATCCCGAAAACCCTGCCGGTGTTCGTCCAGCATGAGGCCGACGCCGCGCTGCTGCGCAGCCAGGGATTTCAGGATCTGCG
CCTGCTGTCGGCAGACAGCGAATTTGCCGGCGTGCGTCTGCTGAAAACCACCTCCGGCCAACACGGCAGCGACCGCACCT
ACGCGGTGCCGGCGATGGCTGAACGCCTGGGCGAGGCCTGCGGCGTGGTGTTTCGCCATCCGCAGGAGAAGACGCTGTGG
CTGATGGGGGATACCATCTGGCGTGATGACATTGCAGCCGACCTGCTGAAGCTGCGCCCGGACGTGGTGGTGTTGAACGC
CGGCTACGCCCACGTCATCGGCTTTGGCCCGATTATCATGGGCAAGGAAGATCTCCTGAACGTGCACTTCACCCTGCCGG
AAGCGAAAATCATGGCTATCCACCTCGAGGCGGTCAACCACTGTCTGGTGAGCCGGGAAGAGATGCGCCAGTATGCGCTG
GATAATCAGATTGCCGATGTGGTGAGTATCCCGCAGGATGGGGAAACCGTGGTTTATTAA

Upstream 100 bases:

>100_bases
CAGGTTGGCCCGATTTCATCGATCATTGCCCAAACGCCCCTGTTGAGCCAGGCGGGGACTCAGTACGATGTTCGTCAGAT
GACCCCAGAGGAACGCCAAC

Downstream 100 bases:

>100_bases
CATGCGCAAGGGGAAAGGACGATGAAACTCACCGACGTGGCGATTGTCGCTGTAGAGGGCTTTAGCCCGTTTCACTACGC
CGTCCCCTGCATGCTGTTTG

Product: putative beta-lactamase-like protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 259; Mature: 259

Protein sequence:

>259_residues
MNITHIRNATQIIDYAGKRFLIDPMLADKGAWPGFPGTARSELRNPLVELPFSRDKIIDVDAVIVTHTHDDHWDAAAIAA
IPKTLPVFVQHEADAALLRSQGFQDLRLLSADSEFAGVRLLKTTSGQHGSDRTYAVPAMAERLGEACGVVFRHPQEKTLW
LMGDTIWRDDIAADLLKLRPDVVVLNAGYAHVIGFGPIIMGKEDLLNVHFTLPEAKIMAIHLEAVNHCLVSREEMRQYAL
DNQIADVVSIPQDGETVVY

Sequences:

>Translated_259_residues
MNITHIRNATQIIDYAGKRFLIDPMLADKGAWPGFPGTARSELRNPLVELPFSRDKIIDVDAVIVTHTHDDHWDAAAIAA
IPKTLPVFVQHEADAALLRSQGFQDLRLLSADSEFAGVRLLKTTSGQHGSDRTYAVPAMAERLGEACGVVFRHPQEKTLW
LMGDTIWRDDIAADLLKLRPDVVVLNAGYAHVIGFGPIIMGKEDLLNVHFTLPEAKIMAIHLEAVNHCLVSREEMRQYAL
DNQIADVVSIPQDGETVVY
>Mature_259_residues
MNITHIRNATQIIDYAGKRFLIDPMLADKGAWPGFPGTARSELRNPLVELPFSRDKIIDVDAVIVTHTHDDHWDAAAIAA
IPKTLPVFVQHEADAALLRSQGFQDLRLLSADSEFAGVRLLKTTSGQHGSDRTYAVPAMAERLGEACGVVFRHPQEKTLW
LMGDTIWRDDIAADLLKLRPDVVVLNAGYAHVIGFGPIIMGKEDLLNVHFTLPEAKIMAIHLEAVNHCLVSREEMRQYAL
DNQIADVVSIPQDGETVVY

Specific function: Unknown

COG id: COG2220

COG function: function code R; Predicted Zn-dependent hydrolases of the beta-lactamase fold

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0173 family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001279 [H]

Pfam domain/function: PF00753 Lactamase_B [H]

EC number: NA

Molecular weight: Translated: 28704; Mature: 28704

Theoretical pI: Translated: 5.51; Mature: 5.51

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNITHIRNATQIIDYAGKRFLIDPMLADKGAWPGFPGTARSELRNPLVELPFSRDKIIDV
CCCCCCCHHHHHHHHCCCEEEECCHHHCCCCCCCCCCCHHHHHCCCCEECCCCCCCEEEE
DAVIVTHTHDDHWDAAAIAAIPKTLPVFVQHEADAALLRSQGFQDLRLLSADSEFAGVRL
EEEEEEECCCCCCCHHHHHHCCCCCEEEEECCCHHHHHHHCCCCCEEEEECCCCCCCEEE
LKTTSGQHGSDRTYAVPAMAERLGEACGVVFRHPQEKTLWLMGDTIWRDDIAADLLKLRP
EEECCCCCCCCCEEECHHHHHHHHHHHHHEEECCCCCEEEEECCCHHHHHHHHHHHHCCC
DVVVLNAGYAHVIGFGPIIMGKEDLLNVHFTLPEAKIMAIHLEAVNHCLVSREEMRQYAL
CEEEEECCCEEEEECCCEEECHHHEEEEEEECCCCEEEEEEHHHHHHHHHCHHHHHHHHH
DNQIADVVSIPQDGETVVY
HHHHHHHHCCCCCCCEEEC
>Mature Secondary Structure
MNITHIRNATQIIDYAGKRFLIDPMLADKGAWPGFPGTARSELRNPLVELPFSRDKIIDV
CCCCCCCHHHHHHHHCCCEEEECCHHHCCCCCCCCCCCHHHHHCCCCEECCCCCCCEEEE
DAVIVTHTHDDHWDAAAIAAIPKTLPVFVQHEADAALLRSQGFQDLRLLSADSEFAGVRL
EEEEEEECCCCCCCHHHHHHCCCCCEEEEECCCHHHHHHHCCCCCEEEEECCCCCCCEEE
LKTTSGQHGSDRTYAVPAMAERLGEACGVVFRHPQEKTLWLMGDTIWRDDIAADLLKLRP
EEECCCCCCCCCEEECHHHHHHHHHHHHHEEECCCCCEEEEECCCHHHHHHHHHHHHCCC
DVVVLNAGYAHVIGFGPIIMGKEDLLNVHFTLPEAKIMAIHLEAVNHCLVSREEMRQYAL
CEEEEECCCEEEEECCCEEECHHHEEEEEEECCCCEEEEEEHHHHHHHHHCHHHHHHHHH
DNQIADVVSIPQDGETVVY
HHHHHHHHCCCCCCCEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9341680; 9384377 [H]