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The map label for this gene is ybhR [H]

Identifier: 238897087

GI number: 238897087

Start: 5080056

End: 5081195

Strand: Reverse

Name: ybhR [H]

Synonym: KP1_5338

Alternate gene names: 238897087

Gene position: 5081195-5080056 (Counterclockwise)

Preceding gene: 238897088

Following gene: 238897086

Centisome position: 96.81

GC content: 47.11

Gene sequence:

>1140_bases
GTGAAAAAAATTAATTTTAGCTTCTCCGTTACGCGGTGGATTGGCGTGGTTATTAAGGAAATTCACGAGCTACGCCGTGA
TAAAGTCAGCATCAGTATGGTGCTCCTGACACCTCTTTTTCAGCTGATCATTCTTGGCTATGCCATCAATATGGATCCGC
ATAATCTTCCGACCGCCTTACTAAATTATGATACCGAACGCATGAGTCAAATCTTTGTGACGGAAGCGCAAAATACCGGG
TATTTTTCGATGATTCCTGTCGATTCAGAAGAGGCGGCGCAGAAAGCCTTTGTGCGGGGGGATGTCACTTTTATCGTGAC
GATCCCTGAAGGGTTTACGCGCAAGTTACTGCGTGGAGAAAAGCCACAACTATTGATTCAGGGGGATGCCATCGATCCGA
TCACCACGGGGAATGCGCTCAGCGCCCTTGTGCAGGTGGCGAAGTCGATGTTTCAGCACGATTTGCCGGGCGACATGCGT
GTGGTGCAAAAAGAGGATGATTTCGAGCTTATCATTCATCGCATGTTTAACCCTGAGGGGATAACCCAGTTTAATACTAT
TCCCGGTATTATGGGGTCTATACTCAGTACAACGTTAATCCTGATGACCGCCCTGTCTATTACCCGCGAGCGAGAAAACG
GGGCGTTAGAAAATTTACTGGTCTCTCCGTTGTCCGGGCTTGAGGTCATTATTGGGAAAATAACGCCTTTTGTTATCATT
GGTCTGTTTCAGGCGACGTTAATCCTGATTGCCGCCGTTTTGTTGTTCGATATCCCCCTTCACGGTAGCGTCTTCCTACT
ATTTTTTGTGCTGTTAATTTATGTCTTTCTTTGTCTGTCAATTGGTATCGGTATTTCTGGCTTAGCACAAAACCAGCTGC
AGGCGCTGCAAATGTCGTCATTTTATTTCATCCCTTCACTTATGCTGTCCGGATTTGTCAGCCCCTTTATTAGTATGCCA
GACTGGGCGAAAGCCATTGGCTCCTGTTTACCGCTGACCTACTTCATCCGCCTGGTTAAGGGCATTATGCTGAAAGGCTA
TTCAGCAATGGCATTGTTGCCTGACCTCTTGCCGCTGATAGGCCTGGCGGTGATTGTCATTGGTGTGGGGTTGAAATCTT
ATCGTAAAACGCTGGACTGA

Upstream 100 bases:

>100_bases
TTAAAATCCGCGCTTTTTGCCTTTACGCAACAGGGTTATGAGTTCTGTAAGGTGGATACCAATCTGGAAGATGCATTTAC
CTACTTGATGAAAAATAATT

Downstream 100 bases:

>100_bases
CATTATCGGCGCGTCCGGCTGGAGTGGGCATAGGCTTTTTGCCATGAAATTCGTATAATGCGCCCTCACATTCGTTTCAA
GCCGGAGATTTCTATCATGC

Product: putative ABC-type multidrug transport system permease component

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 379; Mature: 379

Protein sequence:

>379_residues
MKKINFSFSVTRWIGVVIKEIHELRRDKVSISMVLLTPLFQLIILGYAINMDPHNLPTALLNYDTERMSQIFVTEAQNTG
YFSMIPVDSEEAAQKAFVRGDVTFIVTIPEGFTRKLLRGEKPQLLIQGDAIDPITTGNALSALVQVAKSMFQHDLPGDMR
VVQKEDDFELIIHRMFNPEGITQFNTIPGIMGSILSTTLILMTALSITRERENGALENLLVSPLSGLEVIIGKITPFVII
GLFQATLILIAAVLLFDIPLHGSVFLLFFVLLIYVFLCLSIGIGISGLAQNQLQALQMSSFYFIPSLMLSGFVSPFISMP
DWAKAIGSCLPLTYFIRLVKGIMLKGYSAMALLPDLLPLIGLAVIVIGVGLKSYRKTLD

Sequences:

>Translated_379_residues
MKKINFSFSVTRWIGVVIKEIHELRRDKVSISMVLLTPLFQLIILGYAINMDPHNLPTALLNYDTERMSQIFVTEAQNTG
YFSMIPVDSEEAAQKAFVRGDVTFIVTIPEGFTRKLLRGEKPQLLIQGDAIDPITTGNALSALVQVAKSMFQHDLPGDMR
VVQKEDDFELIIHRMFNPEGITQFNTIPGIMGSILSTTLILMTALSITRERENGALENLLVSPLSGLEVIIGKITPFVII
GLFQATLILIAAVLLFDIPLHGSVFLLFFVLLIYVFLCLSIGIGISGLAQNQLQALQMSSFYFIPSLMLSGFVSPFISMP
DWAKAIGSCLPLTYFIRLVKGIMLKGYSAMALLPDLLPLIGLAVIVIGVGLKSYRKTLD
>Mature_379_residues
MKKINFSFSVTRWIGVVIKEIHELRRDKVSISMVLLTPLFQLIILGYAINMDPHNLPTALLNYDTERMSQIFVTEAQNTG
YFSMIPVDSEEAAQKAFVRGDVTFIVTIPEGFTRKLLRGEKPQLLIQGDAIDPITTGNALSALVQVAKSMFQHDLPGDMR
VVQKEDDFELIIHRMFNPEGITQFNTIPGIMGSILSTTLILMTALSITRERENGALENLLVSPLSGLEVIIGKITPFVII
GLFQATLILIAAVLLFDIPLHGSVFLLFFVLLIYVFLCLSIGIGISGLAQNQLQALQMSSFYFIPSLMLSGFVSPFISMP
DWAKAIGSCLPLTYFIRLVKGIMLKGYSAMALLPDLLPLIGLAVIVIGVGLKSYRKTLD

Specific function: Unknown

COG id: COG0842

COG function: function code V; ABC-type multidrug transport system, permease component

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-2 domain [H]

Homologues:

Organism=Escherichia coli, GI1787010, Length=357, Percent_Identity=28.2913165266106, Blast_Score=152, Evalue=5e-38,
Organism=Escherichia coli, GI1787011, Length=371, Percent_Identity=26.9541778975741, Blast_Score=138, Evalue=6e-34,
Organism=Escherichia coli, GI48994943, Length=367, Percent_Identity=26.158038147139, Blast_Score=131, Evalue=8e-32,
Organism=Escherichia coli, GI226510979, Length=381, Percent_Identity=27.2965879265092, Blast_Score=103, Evalue=1e-23,
Organism=Drosophila melanogaster, GI24650855, Length=341, Percent_Identity=25.8064516129032, Blast_Score=76, Evalue=4e-14,
Organism=Drosophila melanogaster, GI24650853, Length=341, Percent_Identity=25.8064516129032, Blast_Score=76, Evalue=4e-14,
Organism=Drosophila melanogaster, GI85725262, Length=343, Percent_Identity=21.2827988338192, Blast_Score=66, Evalue=5e-11,
Organism=Drosophila melanogaster, GI85725260, Length=343, Percent_Identity=21.2827988338192, Blast_Score=66, Evalue=5e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000412
- InterPro:   IPR013526
- InterPro:   IPR013525 [H]

Pfam domain/function: PF01061 ABC2_membrane [H]

EC number: NA

Molecular weight: Translated: 41886; Mature: 41886

Theoretical pI: Translated: 6.68; Mature: 6.68

Prosite motif: PS51012 ABC_TM2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
4.0 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
4.0 %Met     (Mature Protein)
4.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKINFSFSVTRWIGVVIKEIHELRRDKVSISMVLLTPLFQLIILGYAINMDPHNLPTAL
CCEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHH
LNYDTERMSQIFVTEAQNTGYFSMIPVDSEEAAQKAFVRGDVTFIVTIPEGFTRKLLRGE
HCCCHHHHHHHHHEECCCCCEEEEECCCCHHHHHHHHHCCCEEEEEECCCHHHHHHHCCC
KPQLLIQGDAIDPITTGNALSALVQVAKSMFQHDLPGDMRVVQKEDDFELIIHRMFNPEG
CCCEEEECCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCEEEECCCCHHHHHHHHCCCCC
ITQFNTIPGIMGSILSTTLILMTALSITRERENGALENLLVSPLSGLEVIIGKITPFVII
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCCCHHHHHHHHHHHHHHH
GLFQATLILIAAVLLFDIPLHGSVFLLFFVLLIYVFLCLSIGIGISGLAQNQLQALQMSS
HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH
FYFIPSLMLSGFVSPFISMPDWAKAIGSCLPLTYFIRLVKGIMLKGYSAMALLPDLLPLI
HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
GLAVIVIGVGLKSYRKTLD
HHHHHHHHCCHHHHHHHCC
>Mature Secondary Structure
MKKINFSFSVTRWIGVVIKEIHELRRDKVSISMVLLTPLFQLIILGYAINMDPHNLPTAL
CCEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHH
LNYDTERMSQIFVTEAQNTGYFSMIPVDSEEAAQKAFVRGDVTFIVTIPEGFTRKLLRGE
HCCCHHHHHHHHHEECCCCCEEEEECCCCHHHHHHHHHCCCEEEEEECCCHHHHHHHCCC
KPQLLIQGDAIDPITTGNALSALVQVAKSMFQHDLPGDMRVVQKEDDFELIIHRMFNPEG
CCCEEEECCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCEEEECCCCHHHHHHHHCCCCC
ITQFNTIPGIMGSILSTTLILMTALSITRERENGALENLLVSPLSGLEVIIGKITPFVII
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCCCHHHHHHHHHHHHHHH
GLFQATLILIAAVLLFDIPLHGSVFLLFFVLLIYVFLCLSIGIGISGLAQNQLQALQMSS
HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH
FYFIPSLMLSGFVSPFISMPDWAKAIGSCLPLTYFIRLVKGIMLKGYSAMALLPDLLPLI
HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
GLAVIVIGVGLKSYRKTLD
HHHHHHHHCCHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]