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The map label for this gene is slmA [H]

Identifier: 238897083

GI number: 238897083

Start: 5076667

End: 5077263

Strand: Direct

Name: slmA [H]

Synonym: KP1_5334

Alternate gene names: 238897083

Gene position: 5076667-5077263 (Clockwise)

Preceding gene: 238897082

Following gene: 238897084

Centisome position: 96.73

GC content: 55.95

Gene sequence:

>597_bases
ATGGCAGAAAAGCAAACTGCGAAACGGAATCGTCGCGAAGAAATACTTCAATCTCTGGCGCTGATGCTGGAATCCAGCGA
TGGTAGTCAGCGTATTACCACCGCGAAACTGGCGGCTTCCGTCGGCGTCTCTGAAGCCGCGCTGTATCGCCATTTTCCCA
GCAAAACCCGCATGTTTGACAGCCTGATCGAGTTCATTGAAGACAGTCTGATTACGCGCATCAATTTGATTTTGAAAGAT
GAAAAGGACACCACCGCGCGCCTGCGCCTGATCGTTCTGTTGATTCTTGGCTTTGGCGAGCGTAATCCTGGGCTGACGCG
TATCCTCACCGGGCACGCGCTGATGTTCGAACAGGACCGGCTTCAGGGTCGCATCAACCAGCTTTTTGAGCGCATCGAAG
CGCAGCTACGCCAGGTGATGCGCGAGAAAAAAATGCGCGAAGGCGAAGGCTACACCCTCGACGAAACCCTGCTGGCCAGC
CAGCTGCTGGCTTTCTGCGAGGGCATGCTGTCGCGCTTTGTGCGCAGCGAGTTCAAATATCGTCCGACGGATGATTTCGA
CGCCCGCTGGCCGCTGGTCGCCGCACAGCTGCAGTAA

Upstream 100 bases:

>100_bases
CCAACGCGCATAACGCAATAACATTACCGCAAGCCCTGGTTTGCGGTCGCGTTGTGGATGTCTGCCTGACAAGTGCTTAT
TTTCAGGGGTATTTTAAAAC

Downstream 100 bases:

>100_bases
ATCCTCACATGCAGCCGCCAGGCTGCATGATTCTCCTCGCAATCTGCGTAAGTTTGTCGCAAATCCCAGGGCCATTGGTT
GAATTGCCCAATGCGCGTTT

Product: nucleoid occlusion protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 198; Mature: 197

Protein sequence:

>198_residues
MAEKQTAKRNRREEILQSLALMLESSDGSQRITTAKLAASVGVSEAALYRHFPSKTRMFDSLIEFIEDSLITRINLILKD
EKDTTARLRLIVLLILGFGERNPGLTRILTGHALMFEQDRLQGRINQLFERIEAQLRQVMREKKMREGEGYTLDETLLAS
QLLAFCEGMLSRFVRSEFKYRPTDDFDARWPLVAAQLQ

Sequences:

>Translated_198_residues
MAEKQTAKRNRREEILQSLALMLESSDGSQRITTAKLAASVGVSEAALYRHFPSKTRMFDSLIEFIEDSLITRINLILKD
EKDTTARLRLIVLLILGFGERNPGLTRILTGHALMFEQDRLQGRINQLFERIEAQLRQVMREKKMREGEGYTLDETLLAS
QLLAFCEGMLSRFVRSEFKYRPTDDFDARWPLVAAQLQ
>Mature_197_residues
AEKQTAKRNRREEILQSLALMLESSDGSQRITTAKLAASVGVSEAALYRHFPSKTRMFDSLIEFIEDSLITRINLILKDE
KDTTARLRLIVLLILGFGERNPGLTRILTGHALMFEQDRLQGRINQLFERIEAQLRQVMREKKMREGEGYTLDETLLASQ
LLAFCEGMLSRFVRSEFKYRPTDDFDARWPLVAAQLQ

Specific function: Required for nucleoid occlusion (NO) phenomenon, which cooperates in the proper positioning of the ftsZ/septal ring at midcell during cell division. Acts as a DNA-associated division inhibitor directly involved in preventing Z ring assembly on portions of

COG id: COG1309

COG function: function code K; Transcriptional regulator

Gene ontology:

Cell location: Cytoplasm, nucleoid [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH tetR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI87082302, Length=198, Percent_Identity=96.969696969697, Blast_Score=372, Evalue=1e-105,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR015893
- InterPro:   IPR011075
- InterPro:   IPR001647 [H]

Pfam domain/function: PF00440 TetR_N [H]

EC number: NA

Molecular weight: Translated: 22825; Mature: 22694

Theoretical pI: Translated: 9.09; Mature: 9.09

Prosite motif: PS01081 HTH_TETR_1 ; PS50977 HTH_TETR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
3.5 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAEKQTAKRNRREEILQSLALMLESSDGSQRITTAKLAASVGVSEAALYRHFPSKTRMFD
CCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCHHHHHHHHHCCHHHHHHH
SLIEFIEDSLITRINLILKDEKDTTARLRLIVLLILGFGERNPGLTRILTGHALMFEQDR
HHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHH
LQGRINQLFERIEAQLRQVMREKKMREGEGYTLDETLLASQLLAFCEGMLSRFVRSEFKY
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCC
RPTDDFDARWPLVAAQLQ
CCCCCCCCCCCCHHCCCC
>Mature Secondary Structure 
AEKQTAKRNRREEILQSLALMLESSDGSQRITTAKLAASVGVSEAALYRHFPSKTRMFD
CCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCHHHHHHHHHCCHHHHHHH
SLIEFIEDSLITRINLILKDEKDTTARLRLIVLLILGFGERNPGLTRILTGHALMFEQDR
HHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHH
LQGRINQLFERIEAQLRQVMREKKMREGEGYTLDETLLASQLLAFCEGMLSRFVRSEFKY
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCC
RPTDDFDARWPLVAAQLQ
CCCCCCCCCCCCHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA