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The map label for this gene is xylF [H]

Identifier: 238897031

GI number: 238897031

Start: 5022753

End: 5023808

Strand: Direct

Name: xylF [H]

Synonym: KP1_5278

Alternate gene names: 238897031

Gene position: 5022753-5023808 (Clockwise)

Preceding gene: 238897025

Following gene: 238897032

Centisome position: 95.7

GC content: 49.15

Gene sequence:

>1056_bases
ATGTATCAAACATTATTTTCCGTTCGTCTTACCTACCCTTACAAAAAAGGTATCGTTATTATGAAGATAAAGAACCTTTG
CCTTACGCTTTGCGCCAGCTCCCTCCTGCTCGCCAGCATGGCGGGGATGGCGAAAGAAGTGAAGATTGGCATGGCCATCG
ACGATCTGCGTCTGGAGCGCTGGCAGAAAGACCGTGATATTTTCGTCAATAAAGCAGAATCCTTAGGCGCCAAAGTTTTT
GTCCAGTCCGCTAATGGCAATGAAGAAACGCAGATGTCGCAAATTGAAAACATGATCAACCGCGGCGTCGATGTGTTAGT
CATTATTCCTTATAACGGCCAGGTACTCAGTAACGTTATTAAAGAAGCCAAGCAGGAAGGTATTAAAGTCCTGGCCTATG
ACCGTATGATTAATAATGCCGACATTGATTTCTATATATCTTTCGATAATGAAAAAGTTGGTGAAATGCAGGCGCAAAGT
CTGGTCGACAAAGTGCCGCAGGGTAATTATTTCCTGATGGGCGGTTCGCCGGTGGATAATAACGCTAAACTGTTCCGCGC
CGGACAGATGAAAGTTCTCAAGCCGTATGTCGATGAAGGCAAAATTAAGATTGTCGGCGATCAGTGGGTTGACGGCTGGC
TACCGGAGAACGCGCTGAAAATAATGGAAAACGCGCTAACGGCGAATAATAACAAGATCGATGCCGTGGTCGCCTCCAAT
GACGCCACCGCCGGCGGCGCCATCCAGGCCTTAACCGCCCAGGGGCTGGCCGGCAAAGTGGCGATCTCCGGTCAGGATGC
TGACCTGGCGGGCGTGAAGCGCATTATTTCCGGTACCCAGACGATGACCGTCTATAAACCGATAACCACCCTGGCCACCA
ACGCCGCTGAAATCGCCGTTGAGCTGGGTAACGATAAGCAGCCGAAGGCCGATACCACGCTGAATAACGGCTTAAAAGAC
GTCCCTTCGCGCCTGTTAACGCCAATTGAGGTGAATAAAGAGAATATCGACGCCACGGTGATTAAAGACGGTTTCCATAA
AAAGAGTGAACTGTAA

Upstream 100 bases:

>100_bases
TAATTTGCACATTAAACGAAATTTCATAACGGCAAAATAAGAACCGGTAATTGCCAGCCCTGCTTTCCGCGTTAAGAATC
TGTAACGTATCCGCAACCTC

Downstream 100 bases:

>100_bases
TGGCTGACGCCCCGCTGCGGGGCGTCATTTTCATCCCGCCGGATATCACTGTTGCGGAGTCTTTATGACCTGGCTACTCG
AAATGAAGAACATCACCAAA

Product: D-xylose transporter subunit XylF

Products: ADP; phosphate; xylose [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 351; Mature: 351

Protein sequence:

>351_residues
MYQTLFSVRLTYPYKKGIVIMKIKNLCLTLCASSLLLASMAGMAKEVKIGMAIDDLRLERWQKDRDIFVNKAESLGAKVF
VQSANGNEETQMSQIENMINRGVDVLVIIPYNGQVLSNVIKEAKQEGIKVLAYDRMINNADIDFYISFDNEKVGEMQAQS
LVDKVPQGNYFLMGGSPVDNNAKLFRAGQMKVLKPYVDEGKIKIVGDQWVDGWLPENALKIMENALTANNNKIDAVVASN
DATAGGAIQALTAQGLAGKVAISGQDADLAGVKRIISGTQTMTVYKPITTLATNAAEIAVELGNDKQPKADTTLNNGLKD
VPSRLLTPIEVNKENIDATVIKDGFHKKSEL

Sequences:

>Translated_351_residues
MYQTLFSVRLTYPYKKGIVIMKIKNLCLTLCASSLLLASMAGMAKEVKIGMAIDDLRLERWQKDRDIFVNKAESLGAKVF
VQSANGNEETQMSQIENMINRGVDVLVIIPYNGQVLSNVIKEAKQEGIKVLAYDRMINNADIDFYISFDNEKVGEMQAQS
LVDKVPQGNYFLMGGSPVDNNAKLFRAGQMKVLKPYVDEGKIKIVGDQWVDGWLPENALKIMENALTANNNKIDAVVASN
DATAGGAIQALTAQGLAGKVAISGQDADLAGVKRIISGTQTMTVYKPITTLATNAAEIAVELGNDKQPKADTTLNNGLKD
VPSRLLTPIEVNKENIDATVIKDGFHKKSEL
>Mature_351_residues
MYQTLFSVRLTYPYKKGIVIMKIKNLCLTLCASSLLLASMAGMAKEVKIGMAIDDLRLERWQKDRDIFVNKAESLGAKVF
VQSANGNEETQMSQIENMINRGVDVLVIIPYNGQVLSNVIKEAKQEGIKVLAYDRMINNADIDFYISFDNEKVGEMQAQS
LVDKVPQGNYFLMGGSPVDNNAKLFRAGQMKVLKPYVDEGKIKIVGDQWVDGWLPENALKIMENALTANNNKIDAVVASN
DATAGGAIQALTAQGLAGKVAISGQDADLAGVKRIISGTQTMTVYKPITTLATNAAEIAVELGNDKQPKADTTLNNGLKD
VPSRLLTPIEVNKENIDATVIKDGFHKKSEL

Specific function: Involved in the high-affinity D-xylose membrane transport system. Binds with high affinity to xylose [H]

COG id: COG4213

COG function: function code G; ABC-type xylose transport system, periplasmic component

Gene ontology:

Cell location: Periplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the bacterial solute-binding protein 2 family [H]

Homologues:

Organism=Escherichia coli, GI1789990, Length=331, Percent_Identity=89.4259818731118, Blast_Score=582, Evalue=1e-167,
Organism=Escherichia coli, GI1790526, Length=261, Percent_Identity=25.2873563218391, Blast_Score=62, Evalue=7e-11,

Paralogues:

None

Copy number: 20 Molecules/Cell In: Stationary Phase, Rich Media (Based on E. coli). 100 Molecules/Cell In: Stationary Phase, Rich Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001761
- InterPro:   IPR013456 [H]

Pfam domain/function: PF00532 Peripla_BP_1 [H]

EC number: NA

Molecular weight: Translated: 38302; Mature: 38302

Theoretical pI: Translated: 6.12; Mature: 6.12

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
3.7 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
3.7 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MYQTLFSVRLTYPYKKGIVIMKIKNLCLTLCASSLLLASMAGMAKEVKIGMAIDDLRLER
CCCEEEEEEEECCHHCCEEEEEHHHHHHHHHHHHHHHHHHHCCHHHEEEEEEHHHHHHHH
WQKDRDIFVNKAESLGAKVFVQSANGNEETQMSQIENMINRGVDVLVIIPYNGQVLSNVI
HCCCCHHEEECHHCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHH
KEAKQEGIKVLAYDRMINNADIDFYISFDNEKVGEMQAQSLVDKVPQGNYFLMGGSPVDN
HHHHHCCCEEEEEEHHCCCCCEEEEEEECCCCHHHHHHHHHHHHCCCCCEEEECCCCCCC
NAKLFRAGQMKVLKPYVDEGKIKIVGDQWVDGWLPENALKIMENALTANNNKIDAVVASN
CCEEEECCCEEEECCCCCCCCEEEEECCCCCCCCCHHHHHHHHHHHCCCCCEEEEEEECC
DATAGGAIQALTAQGLAGKVAISGQDADLAGVKRIISGTQTMTVYKPITTLATNAAEIAV
CCCCCCHHHHHHHCCCCCEEEECCCCCHHHHHHHHHCCCCEEEEEECHHHHHCCCEEEEE
ELGNDKQPKADTTLNNGLKDVPSRLLTPIEVNKENIDATVIKDGFHKKSEL
ECCCCCCCCCCCHHHCCHHHHHHHHCCCEEECCCCCCEEEEECCCCCCCCC
>Mature Secondary Structure
MYQTLFSVRLTYPYKKGIVIMKIKNLCLTLCASSLLLASMAGMAKEVKIGMAIDDLRLER
CCCEEEEEEEECCHHCCEEEEEHHHHHHHHHHHHHHHHHHHCCHHHEEEEEEHHHHHHHH
WQKDRDIFVNKAESLGAKVFVQSANGNEETQMSQIENMINRGVDVLVIIPYNGQVLSNVI
HCCCCHHEEECHHCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHH
KEAKQEGIKVLAYDRMINNADIDFYISFDNEKVGEMQAQSLVDKVPQGNYFLMGGSPVDN
HHHHHCCCEEEEEEHHCCCCCEEEEEEECCCCHHHHHHHHHHHHCCCCCEEEECCCCCCC
NAKLFRAGQMKVLKPYVDEGKIKIVGDQWVDGWLPENALKIMENALTANNNKIDAVVASN
CCEEEECCCEEEECCCCCCCCEEEEECCCCCCCCCHHHHHHHHHHHCCCCCEEEEEEECC
DATAGGAIQALTAQGLAGKVAISGQDADLAGVKRIISGTQTMTVYKPITTLATNAAEIAV
CCCCCCHHHHHHHCCCCCEEEECCCCCHHHHHHHHHCCCCEEEEEECHHHHHCCCEEEEE
ELGNDKQPKADTTLNNGLKDVPSRLLTPIEVNKENIDATVIKDGFHKKSEL
ECCCCCCCCCCCHHHCCHHHHHHHHCCCEEECCCCCCEEEEECCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; xylose [Periplasm]; H2O [C]

Specific reaction: ATP + xylose [Periplasm] + H2O = ADP + phosphate + xylose [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8041620; 9278503; 8581399; 9298646 [H]