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The map label for this gene is yiaD [H]

Identifier: 238897010

GI number: 238897010

Start: 5001725

End: 5002387

Strand: Direct

Name: yiaD [H]

Synonym: KP1_5255

Alternate gene names: 238897010

Gene position: 5001725-5002387 (Clockwise)

Preceding gene: 238897008

Following gene: 238897011

Centisome position: 95.3

GC content: 61.39

Gene sequence:

>663_bases
ATGAAAAAACGCGTACTTATGATTGCGGCGCTGGTCAGCGGCACTCTGGCCATTTCTGGCTGCACCACCAACCCCTATAC
CGGTGAACGTGAAGCAGGCAAATCCGGTATTGGCGCAGGTATTGGCTCCTTAGTGGGCGCTGGCGTCGGCGCGCTCTCCT
CTTCCAAACATGACCGCGGCAAAGGCGCGCTGATTGGCGCAGCGGCCGGCGCGGCGCTCGGCGGCGGCATTGGTTACTAC
ATGGACGTGCAGGAAGCGAAGCTGCGCGACAAAATGCAGGGAACCGGGGTCAGCGTGACGCGAAATGGCGACAATATCGT
GCTGAACATGCCGAATAACGTCACCTTCGACAGCAATAGCGCCAACCTGAAGCCGGCCGGCGCCAACACCCTGACCGGCG
TGGCCATGGTGCTAAAAGAGTATGAGAAAACCGCCGTTAACGTGGTCGGCTACACCGACAGCACCGGCAGCAAGGATCTG
AATATGCGTCTGTCGCAACAGCGTGCGGACAGCGTCGCCAGCGCGCTCATCACCCAGGGCGTGGCGGCCAATCGCATTCG
CACCACCGGCATGGGCCCGGCAAACCCGATCGCCAGCAACAGCACGGCGGAAGGCAAAGCGCAGAACCGTCGCGTGGAAA
TCACCCTCAGCCCGCTGCAGTAA

Upstream 100 bases:

>100_bases
CAAAAAGAGATGGTATCCGGGGAATTTTCTCCGTAATCGCGCGTCATAATCAACCGTCACGTTCGCTGTGACAAAGAATA
AAAAGGATTAAGGACATTAA

Downstream 100 bases:

>100_bases
GCGCATCTTCATATCGCCCGGCAGCCGTTCTGCCGGGCAAAATGCTTGATATCGCTATTTTTCGCGCTAAGGTGTTGGCA
GATTTTCAGCAAAGGAAGCC

Product: putative outer membrane lipoprotein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 220; Mature: 220

Protein sequence:

>220_residues
MKKRVLMIAALVSGTLAISGCTTNPYTGEREAGKSGIGAGIGSLVGAGVGALSSSKHDRGKGALIGAAAGAALGGGIGYY
MDVQEAKLRDKMQGTGVSVTRNGDNIVLNMPNNVTFDSNSANLKPAGANTLTGVAMVLKEYEKTAVNVVGYTDSTGSKDL
NMRLSQQRADSVASALITQGVAANRIRTTGMGPANPIASNSTAEGKAQNRRVEITLSPLQ

Sequences:

>Translated_220_residues
MKKRVLMIAALVSGTLAISGCTTNPYTGEREAGKSGIGAGIGSLVGAGVGALSSSKHDRGKGALIGAAAGAALGGGIGYY
MDVQEAKLRDKMQGTGVSVTRNGDNIVLNMPNNVTFDSNSANLKPAGANTLTGVAMVLKEYEKTAVNVVGYTDSTGSKDL
NMRLSQQRADSVASALITQGVAANRIRTTGMGPANPIASNSTAEGKAQNRRVEITLSPLQ
>Mature_220_residues
MKKRVLMIAALVSGTLAISGCTTNPYTGEREAGKSGIGAGIGSLVGAGVGALSSSKHDRGKGALIGAAAGAALGGGIGYY
MDVQEAKLRDKMQGTGVSVTRNGDNIVLNMPNNVTFDSNSANLKPAGANTLTGVAMVLKEYEKTAVNVVGYTDSTGSKDL
NMRLSQQRADSVASALITQGVAANRIRTTGMGPANPIASNSTAEGKAQNRRVEITLSPLQ

Specific function: Unknown

COG id: COG2885

COG function: function code M; Outer membrane protein and related peptidoglycan-associated (lipo)proteins

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Potential). Cell inner membrane; Lipid-anchor (Probable) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 OmpA-like domain [H]

Homologues:

Organism=Escherichia coli, GI48994946, Length=219, Percent_Identity=89.4977168949772, Blast_Score=355, Evalue=1e-99,
Organism=Escherichia coli, GI1787191, Length=120, Percent_Identity=35.8333333333333, Blast_Score=70, Evalue=1e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001035
- InterPro:   IPR006664
- InterPro:   IPR006690
- InterPro:   IPR006665 [H]

Pfam domain/function: PF00691 OmpA [H]

EC number: NA

Molecular weight: Translated: 22385; Mature: 22385

Theoretical pI: Translated: 10.30; Mature: 10.30

Prosite motif: PS00013 PROKAR_LIPOPROTEIN ; PS01068 OMPA_1 ; PS51123 OMPA_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
3.6 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
3.6 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKRVLMIAALVSGTLAISGCTTNPYTGEREAGKSGIGAGIGSLVGAGVGALSSSKHDRG
CCCHHEEHEEHHCCCEEEECCCCCCCCCCHHCCCCCCCCCHHHHHHCCCCCCCCCCCCCC
KGALIGAAAGAALGGGIGYYMDVQEAKLRDKMQGTGVSVTRNGDNIVLNMPNNVTFDSNS
CCEEEECCCCHHHCCCEEEEEEHHHHHHHHHHCCCCEEEEECCCEEEEECCCCEEECCCC
ANLKPAGANTLTGVAMVLKEYEKTAVNVVGYTDSTGSKDLNMRLSQQRADSVASALITQG
CCCCCCCCCHHHHHHHHHHHHHHHEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHCC
VAANRIRTTGMGPANPIASNSTAEGKAQNRRVEITLSPLQ
HHHCCEEECCCCCCCCCCCCCCCCCCCCCCEEEEEECCCC
>Mature Secondary Structure
MKKRVLMIAALVSGTLAISGCTTNPYTGEREAGKSGIGAGIGSLVGAGVGALSSSKHDRG
CCCHHEEHEEHHCCCEEEECCCCCCCCCCHHCCCCCCCCCHHHHHHCCCCCCCCCCCCCC
KGALIGAAAGAALGGGIGYYMDVQEAKLRDKMQGTGVSVTRNGDNIVLNMPNNVTFDSNS
CCEEEECCCCHHHCCCEEEEEEHHHHHHHHHHCCCCEEEEECCCEEEEECCCCEEECCCC
ANLKPAGANTLTGVAMVLKEYEKTAVNVVGYTDSTGSKDLNMRLSQQRADSVASALITQG
CCCCCCCCCHHHHHHHHHHHHHHHEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHCC
VAANRIRTTGMGPANPIASNSTAEGKAQNRRVEITLSPLQ
HHHCCEEECCCCCCCCCCCCCCCCCCCCCCEEEEEECCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8041620; 9278503; 2180922 [H]