Click here to switch to the map view.

The map label for this gene is arnD [H]

Identifier: 238896941

GI number: 238896941

Start: 4913861

End: 4914763

Strand: Reverse

Name: arnD [H]

Synonym: KP1_5181

Alternate gene names: 238896941

Gene position: 4914763-4913861 (Counterclockwise)

Preceding gene: 238896942

Following gene: 238896940

Centisome position: 93.64

GC content: 63.34

Gene sequence:

>903_bases
ATGAAACAGGTCGGCTTACGCATAGATGTCGATACCTTTCGCGGCACGCGGGACGGCGTTCCGCGGCTGCTGGAGCTGCT
GGGCCGGCATGGGATCCAGGCAAGCTTCTTCTTCAGCGTCGGGCCGGACAATATGGGGCGCCACCTGTGGCGCCTGGTAA
AACCGAAGTTTCTGTGGAAGATGCTGCGTTCCAGAGCCGCCTCGCTGTACGGCTGGGATATTCTGCTGGCCGGCACCGCC
TGGCCGGGGCGCCGCATCGGCGCAGGGAACGAAGCGGTGATCCGCGCCGCCGCCGAATCTCATGAAGTCGGCCTGCACGC
CTGGGACCACTACAGCTGGCAGGCGTGGAGCGGCGTCTGGCCGCAGGAAAGGCTGGCGCTGGAGGTTGAGCGCGGCCTGC
TGGAGCTCGAGCGCATCATCGGCCGGCCGGTGACCTGCTCGGCCGTCGCCGGCTGGCGCGCCGATCAGCGGGTGGTTAAA
GCCAAAGAATCCTTCGATTTTCTCTACAACAGCGACTGTCGCGGCACGCGGCCGTTTCTGCCCCAGCTCGGCAGCGGCGT
CTCTGGTACCGTGCAGATCCCGGTCACGTTGCCGACCTGGGACGAGGCGGTGGGCACGGCGGTGGATATCGCCGGCTTTA
ACCGCTACCTGCTGGACTGCATCCATCGCGATGCGGGCGTGCCGGTCTATACCATTCACGCTGAAGTGGAAGGCATTGCC
TACGCCGATCAGTTCAATGAACTACTGACCATGGCGGCGGAAGAAGAAATTCAGTTTTGCCCACTGAGCCAGCTGCTGCC
CGCTGACTTTAGCGAGCTGCCCTCAGGCAAAGTGGTTCGTGGTGAACTGGCTGGCCGGGAAGGCTGGCTCGGACGTGAAC
AATTACTGACTTCGGGTATTTGA

Upstream 100 bases:

>100_bases
GCTGCCTGAACTGGGAGCCGAAGGTGGAGATGGAAGAAACGGTCGAACACACGCTGGACTTCTTCCTGCGCACGGTTGAA
CTGGTGGACGATAAAAATCC

Downstream 100 bases:

>100_bases
TGAAAAGCATTCGCTATGGCGTCTCTCTGATTGCGCTGTTTGCGCTGTATTATCTGCTGCCGCTCAATTTCCGTTTGCTC
TGGCAACCCGACGAAACCCG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 300; Mature: 300

Protein sequence:

>300_residues
MKQVGLRIDVDTFRGTRDGVPRLLELLGRHGIQASFFFSVGPDNMGRHLWRLVKPKFLWKMLRSRAASLYGWDILLAGTA
WPGRRIGAGNEAVIRAAAESHEVGLHAWDHYSWQAWSGVWPQERLALEVERGLLELERIIGRPVTCSAVAGWRADQRVVK
AKESFDFLYNSDCRGTRPFLPQLGSGVSGTVQIPVTLPTWDEAVGTAVDIAGFNRYLLDCIHRDAGVPVYTIHAEVEGIA
YADQFNELLTMAAEEEIQFCPLSQLLPADFSELPSGKVVRGELAGREGWLGREQLLTSGI

Sequences:

>Translated_300_residues
MKQVGLRIDVDTFRGTRDGVPRLLELLGRHGIQASFFFSVGPDNMGRHLWRLVKPKFLWKMLRSRAASLYGWDILLAGTA
WPGRRIGAGNEAVIRAAAESHEVGLHAWDHYSWQAWSGVWPQERLALEVERGLLELERIIGRPVTCSAVAGWRADQRVVK
AKESFDFLYNSDCRGTRPFLPQLGSGVSGTVQIPVTLPTWDEAVGTAVDIAGFNRYLLDCIHRDAGVPVYTIHAEVEGIA
YADQFNELLTMAAEEEIQFCPLSQLLPADFSELPSGKVVRGELAGREGWLGREQLLTSGI
>Mature_300_residues
MKQVGLRIDVDTFRGTRDGVPRLLELLGRHGIQASFFFSVGPDNMGRHLWRLVKPKFLWKMLRSRAASLYGWDILLAGTA
WPGRRIGAGNEAVIRAAAESHEVGLHAWDHYSWQAWSGVWPQERLALEVERGLLELERIIGRPVTCSAVAGWRADQRVVK
AKESFDFLYNSDCRGTRPFLPQLGSGVSGTVQIPVTLPTWDEAVGTAVDIAGFNRYLLDCIHRDAGVPVYTIHAEVEGIA
YADQFNELLTMAAEEEIQFCPLSQLLPADFSELPSGKVVRGELAGREGWLGREQLLTSGI

Specific function: Catalyzes the deformylation of 4-deoxy-4-formamido-L- arabinose-phosphoundecaprenol to 4-amino-4-deoxy-L-arabinose- phosphoundecaprenol. The modified arabinose is attached to lipid A and is required for resistance to polymyxin and cationic antimicrobial p

COG id: COG0726

COG function: function code G; Predicted xylanase/chitin deacetylase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the polysaccharide deacetylase family. ArnD deformylase subfamily [H]

Homologues:

Organism=Escherichia coli, GI1788590, Length=298, Percent_Identity=67.4496644295302, Blast_Score=410, Evalue=1e-116,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011330
- InterPro:   IPR002509 [H]

Pfam domain/function: PF01522 Polysacc_deac_1 [H]

EC number: NA

Molecular weight: Translated: 33365; Mature: 33365

Theoretical pI: Translated: 6.40; Mature: 6.40

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKQVGLRIDVDTFRGTRDGVPRLLELLGRHGIQASFFFSVGPDNMGRHLWRLVKPKFLWK
CCCCCEEEEHHHCCCCCCCHHHHHHHHHHCCCCEEEEEEECCCHHHHHHHHHHCHHHHHH
MLRSRAASLYGWDILLAGTAWPGRRIGAGNEAVIRAAAESHEVGLHAWDHYSWQAWSGVW
HHHHHHHHHCCCEEEEECCCCCCCCCCCCCHHHEEEHHCCCCCCCEEECCCCCHHCCCCC
PQERLALEVERGLLELERIIGRPVTCSAVAGWRADQRVVKAKESFDFLYNSDCRGTRPFL
CHHHHHHHHHHHHHHHHHHHCCCCEEHHHHCCCHHHHHHHHHHHHHHHCCCCCCCCCCCH
PQLGSGVSGTVQIPVTLPTWDEAVGTAVDIAGFNRYLLDCIHRDAGVPVYTIHAEVEGIA
HHHCCCCCCEEEEEEECCCHHHHHCCEEEHHHHHHHHHHHHHHCCCCCEEEEEECCCCCH
YADQFNELLTMAAEEEIQFCPLSQLLPADFSELPSGKVVRGELAGREGWLGREQLLTSGI
HHHHHHHHHHHHHHHCCCCCCHHHHCCCCHHHCCCCCEEEEECCCCCCCCCHHHHHHCCC
>Mature Secondary Structure
MKQVGLRIDVDTFRGTRDGVPRLLELLGRHGIQASFFFSVGPDNMGRHLWRLVKPKFLWK
CCCCCEEEEHHHCCCCCCCHHHHHHHHHHCCCCEEEEEEECCCHHHHHHHHHHCHHHHHH
MLRSRAASLYGWDILLAGTAWPGRRIGAGNEAVIRAAAESHEVGLHAWDHYSWQAWSGVW
HHHHHHHHHCCCEEEEECCCCCCCCCCCCCHHHEEEHHCCCCCCCEEECCCCCHHCCCCC
PQERLALEVERGLLELERIIGRPVTCSAVAGWRADQRVVKAKESFDFLYNSDCRGTRPFL
CHHHHHHHHHHHHHHHHHHHCCCCEEHHHHCCCHHHHHHHHHHHHHHHCCCCCCCCCCCH
PQLGSGVSGTVQIPVTLPTWDEAVGTAVDIAGFNRYLLDCIHRDAGVPVYTIHAEVEGIA
HHHCCCCCCEEEEEEECCCHHHHHCCEEEHHHHHHHHHHHHHHCCCCCEEEEEECCCCCH
YADQFNELLTMAAEEEIQFCPLSQLLPADFSELPSGKVVRGELAGREGWLGREQLLTSGI
HHHHHHHHHHHHHHHCCCCCCHHHHCCCCHHHCCCCCEEEEECCCCCCCCCHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA