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The map label for this gene is yrfH [H]

Identifier: 238896868

GI number: 238896868

Start: 4832764

End: 4833165

Strand: Direct

Name: yrfH [H]

Synonym: KP1_5102

Alternate gene names: 238896868

Gene position: 4832764-4833165 (Clockwise)

Preceding gene: 238896867

Following gene: 238896869

Centisome position: 92.08

GC content: 56.97

Gene sequence:

>402_bases
ATGAAAGAAAAGCCCACCGAAACCGTCAGACTGGACAAATGGCTTTGGGCCGCCCGCTTTTACAAAACCCGCGCGCTGGC
GCGGGAAATGATTGAAGGCGGCAAGGTGCATTACAACGGACAACGTAGCAAACCCGGAAAAATCGTCGAACTCGACGCCA
TGCTGACGCTGCGCCAGGGCAACGACGAGCGGACGGTGCGCATTATCGGCATTACCGAACAGCGCCGCCCGGCAAGCGAA
GCCGTCAACCTGTATGAAGAGACGGCGGAGAGTATCGAGAAGCGTGAAAAAATGGCCCTGGCGCGCAAAATGAACGCCCT
GACCATGCCGCACCCTGACAGACGTCCGGACAAGAAAGAGCGCCGCGACCTGATGAGATTTAAACACGGCGAGAGTGAAT
AA

Upstream 100 bases:

>100_bases
CCAATCCTGACTCCGGACTGGCGGAAAAGCAGTATCTGCGCCATCCGGGGCTGAATGATTACCGACGACTGATCCCTTCG
CTTACCCCGAAGGAGAGGCG

Downstream 100 bases:

>100_bases
CTCGCGCCAGAAAGAGAGATGATTATGACTCAACACGATCAATTACATCGTTATCTGTTTGAAAACTATGCCGTGCGCGG
CGAGCTGGTGACGGTGTCGG

Product: ribosome-associated heat shock protein Hsp15

Products: NA

Alternate protein names: HSP15 [H]

Number of amino acids: Translated: 133; Mature: 133

Protein sequence:

>133_residues
MKEKPTETVRLDKWLWAARFYKTRALAREMIEGGKVHYNGQRSKPGKIVELDAMLTLRQGNDERTVRIIGITEQRRPASE
AVNLYEETAESIEKREKMALARKMNALTMPHPDRRPDKKERRDLMRFKHGESE

Sequences:

>Translated_133_residues
MKEKPTETVRLDKWLWAARFYKTRALAREMIEGGKVHYNGQRSKPGKIVELDAMLTLRQGNDERTVRIIGITEQRRPASE
AVNLYEETAESIEKREKMALARKMNALTMPHPDRRPDKKERRDLMRFKHGESE
>Mature_133_residues
MKEKPTETVRLDKWLWAARFYKTRALAREMIEGGKVHYNGQRSKPGKIVELDAMLTLRQGNDERTVRIIGITEQRRPASE
AVNLYEETAESIEKREKMALARKMNALTMPHPDRRPDKKERRDLMRFKHGESE

Specific function: Involved in the recycling of free 50S ribosomal subunits that still carry a nascent chain. Binds RNA more specifically than DNA. Binds with very high affinity to the free 50S ribosomal subunit. Does not bind it when it is part of the 70S ribosome [H]

COG id: COG1188

COG function: function code J; Ribosome-associated heat shock protein implicated in the recycling of the 50S subunit (S4 paralog)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 S4 RNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1789803, Length=133, Percent_Identity=87.9699248120301, Blast_Score=241, Evalue=1e-65,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002942 [H]

Pfam domain/function: PF01479 S4 [H]

EC number: NA

Molecular weight: Translated: 15650; Mature: 15650

Theoretical pI: Translated: 10.54; Mature: 10.54

Prosite motif: PS50889 S4

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
5.3 %Met     (Translated Protein)
5.3 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
5.3 %Met     (Mature Protein)
5.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKEKPTETVRLDKWLWAARFYKTRALAREMIEGGKVHYNGQRSKPGKIVELDAMLTLRQG
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCCEEEEEHEEEEECC
NDERTVRIIGITEQRRPASEAVNLYEETAESIEKREKMALARKMNALTMPHPDRRPDKKE
CCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHH
RRDLMRFKHGESE
HHHHHHHCCCCCC
>Mature Secondary Structure
MKEKPTETVRLDKWLWAARFYKTRALAREMIEGGKVHYNGQRSKPGKIVELDAMLTLRQG
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCCEEEEEHEEEEECC
NDERTVRIIGITEQRRPASEAVNLYEETAESIEKREKMALARKMNALTMPHPDRRPDKKE
CCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHH
RRDLMRFKHGESE
HHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]