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The map label for this gene is hofM [H]

Identifier: 238896863

GI number: 238896863

Start: 4825476

End: 4826300

Strand: Reverse

Name: hofM [H]

Synonym: KP1_5096

Alternate gene names: 238896863

Gene position: 4826300-4825476 (Counterclockwise)

Preceding gene: 238896865

Following gene: 238896862

Centisome position: 91.96

GC content: 64.48

Gene sequence:

>825_bases
TTGCCGGATAAGGAGATCGTAAGCATGGCTTTCAGAAACTGGCGGCTTGGAATGCATATCCAACAGGATAGCATTGCCAT
TGTCGCGCTATTGCATGAACGTTCACACTGGGCGCTGCGCCGCTGGTGGCGTATCCCATTGCCGCCGGGGCTGGTACGTC
AGGGAATGGTGGCGGACGTCAGCGCACTCGGTTCGCGGCTGGCCGCCTGGCGGCGGGAGCTACCGGCGCAGCATCAGGTT
AGTATCGCCTTTCCCGCGGTGCGCACACTGCAAAAGCGTCTTCCGTATCCCCAGTTCGCCCTGCGGGAGCGGGAACAGGC
GACGTGGGTAGCCAGCGCCATGAGCCAGCAGCTGGCAATGCCTGCCTCCGCGCTATGTATTGATTATGCGCCCACCTCGC
GGGATGACGGCTGGCAGGTTACGGCGGCGCAGCGGCTGGATATCAATGTTCTGCGGGAGCTGGCAGGGCGGCTGCGGCTG
CGGGTGGCGGCCATCGTACCGGATGCCAGTGCGCTCGGCGCCTTTTTCCCCTGGATGACTGCGGCAGACCAGGGCCTGGC
GTGGCGGGATGAAAAGCACTGGCTGTGGGCGACCCGTGAGGCCTGGGGCAGTGACGCCTGCGCTGATGTCGGGTCCTTAA
GCCAGCTGGCGGGGCAGCTTCAGGTTCCGCTGCGCCTGTGTATTGACGCGGGCGATGAGGCCAGTCGCTTTGATGTCTGG
CAAGTGATTCACCGTCGGCAGCCCCCGCTGCCAGCCGATGGCGATCGTTACGCCATTGCCCTTGGGCTGGCGCTGGGAGG
CGGGCGGCATGACGCATGTCGTTAA

Upstream 100 bases:

>100_bases
CTTCACCGGTGTTTTCCCATTTAGTTTTATTTGGGCAGTTTATAAACAAACGCGCGGTAGTATAAAGGCAAGCCAGGTGC
ATTGATATAGCCGGGCAGTT

Downstream 100 bases:

>100_bases
TCTTCTTCCCTGGCGCGACCTGCGTCGCCGCCAGCGCCTGCGCTACGTCCTGTTGTTAACCATCGGCATTGTGCTGCTGG
GGGGGATGGGCCTGCTGGTG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 274; Mature: 273

Protein sequence:

>274_residues
MPDKEIVSMAFRNWRLGMHIQQDSIAIVALLHERSHWALRRWWRIPLPPGLVRQGMVADVSALGSRLAAWRRELPAQHQV
SIAFPAVRTLQKRLPYPQFALREREQATWVASAMSQQLAMPASALCIDYAPTSRDDGWQVTAAQRLDINVLRELAGRLRL
RVAAIVPDASALGAFFPWMTAADQGLAWRDEKHWLWATREAWGSDACADVGSLSQLAGQLQVPLRLCIDAGDEASRFDVW
QVIHRRQPPLPADGDRYAIALGLALGGGRHDACR

Sequences:

>Translated_274_residues
MPDKEIVSMAFRNWRLGMHIQQDSIAIVALLHERSHWALRRWWRIPLPPGLVRQGMVADVSALGSRLAAWRRELPAQHQV
SIAFPAVRTLQKRLPYPQFALREREQATWVASAMSQQLAMPASALCIDYAPTSRDDGWQVTAAQRLDINVLRELAGRLRL
RVAAIVPDASALGAFFPWMTAADQGLAWRDEKHWLWATREAWGSDACADVGSLSQLAGQLQVPLRLCIDAGDEASRFDVW
QVIHRRQPPLPADGDRYAIALGLALGGGRHDACR
>Mature_273_residues
PDKEIVSMAFRNWRLGMHIQQDSIAIVALLHERSHWALRRWWRIPLPPGLVRQGMVADVSALGSRLAAWRRELPAQHQVS
IAFPAVRTLQKRLPYPQFALREREQATWVASAMSQQLAMPASALCIDYAPTSRDDGWQVTAAQRLDINVLRELAGRLRLR
VAAIVPDASALGAFFPWMTAADQGLAWRDEKHWLWATREAWGSDACADVGSLSQLAGQLQVPLRLCIDAGDEASRFDVWQ
VIHRRQPPLPADGDRYAIALGLALGGGRHDACR

Specific function: Required for the use of extracellular DNA as a nutrient [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI87082257, Length=261, Percent_Identity=42.911877394636, Blast_Score=215, Evalue=2e-57,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 30659; Mature: 30527

Theoretical pI: Translated: 9.38; Mature: 9.38

Prosite motif: PS00032 ANTENNAPEDIA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPDKEIVSMAFRNWRLGMHIQQDSIAIVALLHERSHWALRRWWRIPLPPGLVRQGMVADV
CCCHHHHHHHHHCCCCCEEECCCCEEEEEEHHHCCHHHHHHHCCCCCCHHHHHCCHHHHH
SALGSRLAAWRRELPAQHQVSIAFPAVRTLQKRLPYPQFALREREQATWVASAMSQQLAM
HHHHHHHHHHHHHCCCCCEEEEHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCC
PASALCIDYAPTSRDDGWQVTAAQRLDINVLRELAGRLRLRVAAIVPDASALGAFFPWMT
CHHHEEEECCCCCCCCCEEEEHHHHCCHHHHHHHHHHHHEEEEEECCCHHHHHHHHHHHH
AADQGLAWRDEKHWLWATREAWGSDACADVGSLSQLAGQLQVPLRLCIDAGDEASRFDVW
HCCCCCCEECCCCEEEEEHHHCCCCHHHHHHHHHHHHHHHCCCHHEEECCCCCCHHHHHH
QVIHRRQPPLPADGDRYAIALGLALGGGRHDACR
HHHHCCCCCCCCCCCCEEEEEEEEECCCCCCCCC
>Mature Secondary Structure 
PDKEIVSMAFRNWRLGMHIQQDSIAIVALLHERSHWALRRWWRIPLPPGLVRQGMVADV
CCHHHHHHHHHCCCCCEEECCCCEEEEEEHHHCCHHHHHHHCCCCCCHHHHHCCHHHHH
SALGSRLAAWRRELPAQHQVSIAFPAVRTLQKRLPYPQFALREREQATWVASAMSQQLAM
HHHHHHHHHHHHHCCCCCEEEEHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCC
PASALCIDYAPTSRDDGWQVTAAQRLDINVLRELAGRLRLRVAAIVPDASALGAFFPWMT
CHHHEEEECCCCCCCCCEEEEHHHHCCHHHHHHHHHHHHEEEEEECCCHHHHHHHHHHHH
AADQGLAWRDEKHWLWATREAWGSDACADVGSLSQLAGQLQVPLRLCIDAGDEASRFDVW
HCCCCCCEECCCCEEEEEHHHCCCCHHHHHHHHHHHHHHHCCCHHEEECCCCCCHHHHHH
QVIHRRQPPLPADGDRYAIALGLALGGGRHDACR
HHHHCCCCCCCCCCCCEEEEEEEEECCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]