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The map label for this gene is ydfH [C]

Identifier: 238896739

GI number: 238896739

Start: 4718721

End: 4719386

Strand: Reverse

Name: ydfH [C]

Synonym: KP1_4957

Alternate gene names: 238896739

Gene position: 4719386-4718721 (Counterclockwise)

Preceding gene: 238896740

Following gene: 238896738

Centisome position: 89.92

GC content: 51.35

Gene sequence:

>666_bases
GTGCAGAAGCCTAAATTAGGGAAAATTAAGCTTCTTTCCGCGAAGGAGCAGGTGGCGGCGGTGTTGCGTAAAGCGATCCT
GTCGCGGGATTTAGTGGAAGGGCAGGAGATTACCCTTGAAGGGATTGCCCGACTGGTTGGCGTTTCCAGCATGCCGGTAC
GCGAAGCGTTTCAAATTTTAGCCGCCGACGGTCTGATTCAAGTGCGGCCGAATAAAGGCGCGGTGGTGCTGGGGATTAAT
GAGCAGACCATCCGCGAACATTATGAAATTCGCGCCGTACTGGAAAGTGAAGCCGTGGCGAAAGCTTCTCGTCCAGGGAC
CGATATTTCACGCATCGCCCAGGTTCACTATGCCGCAGAGAAGGCGCTGGCAGATAATAATTCTGCTGAATATTCCGACC
TGAACCAGGCTTTCCATATGGAGATCTGGAGCGCGGCGGGCAATGAAAAAATGAAGATGCTACTCTGCAACATGTGGAAC
GGCCTGTCGATGGGACATAAAGTCACCGAAGAAGAGTATGCCGTTATCTCAATTCGCGAACATAAAGCGATTTTACAAGC
GCTTGAGCAACATAACGAAGCACTGGCCCGCCAGCGAATGCATGAACATATTATTCGCTCGATGGAAAATATGCTCACTC
GATACCTGCCCGATACCACCACCTGA

Upstream 100 bases:

>100_bases
GCCATCGGCAATGGCGAAGGCGGAAAAATTGCCCAGACAACGCAGCGTTATTTCCTTATGCTTGCGGAAATTATGCGTCA
ACATATGAAGGATTGGGAAA

Downstream 100 bases:

>100_bases
AGGGCTCCTCCGCCAGCGACAGGCTGGCTTTTCTTACATTTATCTGCGCTATTAGTTACTTTTCGTGACGATCTGCACAG
GATCTTGATGCACATCTCAT

Product: putative GntR-family regulatory protein

Products: NA

Alternate protein names: Transcriptional Regulator GntR Family; Transcriptional Regulator; Transcriptional Regulator GntR Family Protein; GntR-Family Transcriptional Regulator; GntR Domain-Containing Protein; GntR Family Regulatory Protein; Transcription Regulator Protein; GntR Domain Protein; Transcription Regulator; Regulatory Protein GntR HTH; HTH-Type Transcriptional Regulator; Transcriptional Regulator GntR; Transcriptional Regulatory Protein; Regulatory Protein; Regulatory Protein GntR; GntR Family Transcription Regulator; Transcriptional Regulator MdcY Family Protein; Transcriptional Regulator GntR-Family; Transcriptional Regulator Protein; Regulatory Protein GntR Family; Transcription Regulator AsnC

Number of amino acids: Translated: 221; Mature: 221

Protein sequence:

>221_residues
MQKPKLGKIKLLSAKEQVAAVLRKAILSRDLVEGQEITLEGIARLVGVSSMPVREAFQILAADGLIQVRPNKGAVVLGIN
EQTIREHYEIRAVLESEAVAKASRPGTDISRIAQVHYAAEKALADNNSAEYSDLNQAFHMEIWSAAGNEKMKMLLCNMWN
GLSMGHKVTEEEYAVISIREHKAILQALEQHNEALARQRMHEHIIRSMENMLTRYLPDTTT

Sequences:

>Translated_221_residues
MQKPKLGKIKLLSAKEQVAAVLRKAILSRDLVEGQEITLEGIARLVGVSSMPVREAFQILAADGLIQVRPNKGAVVLGIN
EQTIREHYEIRAVLESEAVAKASRPGTDISRIAQVHYAAEKALADNNSAEYSDLNQAFHMEIWSAAGNEKMKMLLCNMWN
GLSMGHKVTEEEYAVISIREHKAILQALEQHNEALARQRMHEHIIRSMENMLTRYLPDTTT
>Mature_221_residues
MQKPKLGKIKLLSAKEQVAAVLRKAILSRDLVEGQEITLEGIARLVGVSSMPVREAFQILAADGLIQVRPNKGAVVLGIN
EQTIREHYEIRAVLESEAVAKASRPGTDISRIAQVHYAAEKALADNNSAEYSDLNQAFHMEIWSAAGNEKMKMLLCNMWN
GLSMGHKVTEEEYAVISIREHKAILQALEQHNEALARQRMHEHIIRSMENMLTRYLPDTTT

Specific function: Unknown

COG id: COG1802

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 24722; Mature: 24722

Theoretical pI: Translated: 7.30; Mature: 7.30

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
4.5 %Met     (Translated Protein)
5.0 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
4.5 %Met     (Mature Protein)
5.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQKPKLGKIKLLSAKEQVAAVLRKAILSRDLVEGQEITLEGIARLVGVSSMPVREAFQIL
CCCCCCCCEEEECHHHHHHHHHHHHHHHHHHHCCCEECHHHHHHHHCCCCCCHHHHHHHH
AADGLIQVRPNKGAVVLGINEQTIREHYEIRAVLESEAVAKASRPGTDISRIAQVHYAAE
HHCCEEEECCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
KALADNNSAEYSDLNQAFHMEIWSAAGNEKMKMLLCNMWNGLSMGHKVTEEEYAVISIRE
HHHCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCCCCCCCEEEEEHHH
HKAILQALEQHNEALARQRMHEHIIRSMENMLTRYLPDTTT
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
>Mature Secondary Structure
MQKPKLGKIKLLSAKEQVAAVLRKAILSRDLVEGQEITLEGIARLVGVSSMPVREAFQIL
CCCCCCCCEEEECHHHHHHHHHHHHHHHHHHHCCCEECHHHHHHHHCCCCCCHHHHHHHH
AADGLIQVRPNKGAVVLGINEQTIREHYEIRAVLESEAVAKASRPGTDISRIAQVHYAAE
HHCCEEEECCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
KALADNNSAEYSDLNQAFHMEIWSAAGNEKMKMLLCNMWNGLSMGHKVTEEEYAVISIRE
HHHCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCCCCCCCEEEEEHHH
HKAILQALEQHNEALARQRMHEHIIRSMENMLTRYLPDTTT
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA