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The map label for this gene is yhcM [H]

Identifier: 238896728

GI number: 238896728

Start: 4706996

End: 4708123

Strand: Reverse

Name: yhcM [H]

Synonym: KP1_4944

Alternate gene names: 238896728

Gene position: 4708123-4706996 (Counterclockwise)

Preceding gene: 238896732

Following gene: 238896727

Centisome position: 89.7

GC content: 60.64

Gene sequence:

>1128_bases
ATGCAAAGCCTGTCTCCAACATCGCGTTACCTTTTAGCCCTGAAAGAGGGCAGCCATCAACCCGACGACGTCCAGCAAGA
AGCGGTGAGCCGCCTTGATACCATTTACCAGGAACTGCAGACGCAGCCCGCGCCGGTCGCGTCAGGCGGCGGTTTGCGCG
CGAAATTCGGCAAACTGCTGGGTAAGCGCGAGCCGGCTGCCGGGACGGCACCTGTCCGCGGCCTGTATATGTGGGGCGGC
GTGGGGCGAGGCAAAACCTGGCTGATGGACCTGTTTTACCAGAGCCTGCCGGGCGAGCGTAAACAGCGCCTGCATTTCCA
TCGTTTCATGCTGCGCGTACACGAAGAGCTGACCACCCTGCAGGGACATAGCGACCCGCTGGAGATCGTCGCCGACCGCT
TTAAAGCGGAAACCGACGTGCTCTGTTTCGACGAGTTTTTTGTCTCCGATATTACCGACGCCATGCTGTTGGGCGGGCTG
ATGAAAGCCCTGTTCGCCCGCGGCATCACCCTGGTGGCGACCTCCAATATTCCGCCGGATGAACTCTATCGCAATGGCCT
GCAGCGGGCCCGTTTTCTGCCGGCGATCGACGCCATCAAGCAGCATTGCGATATTATGAACGTCGATGCCGGCATCGATT
ATCGACTGCGTACCCTGACGCAGGCGCACCTGTGGCTGTCGCCGCTGAATAACGACACCCGCGAACAGATGGATAAACTG
TGGCTCGCGCTGGCGGGCGCGCCGCGCGCTGCCGGGCCGACGCTGGAGATTAACCATCGCGAGCTGCCTACCCTCGGCGT
AGAAAACCAGACGCTGGCGGCATCATTCGCCACGCTATGCGTGGATGCGCGCAGCCAGCATGACTATATCGCGCTCTCCC
GACTGTTCCATACGGTGATGCTGTTCGACGTGCCGGTGATGACCGCGCAGCTGGAGAGCGAGGCCCGCCGCTTTATCGCT
CTGGTGGATGAGTTTTACGAGCGCCATGTAAAGCTGGTGGTCAGCGCGGCAGTGCCGCTGTACGACATTTACCAGGGCGA
GCGGCTGAAGTTTGAGTTCCAGCGCTGTCTCTCTCGTCTGCAGGAGATGCAGAGCGAAGAGTACCTCAAACGTCCGCATA
TGCCCTGA

Upstream 100 bases:

>100_bases
GAAGTGGAATCCTGGCGTATCATCGCGTAGTGTAGAACGGCCTTTTTTTCGTCAATCGTGAGCTTCGGCATTACGGTTTT
CAAGGAATAACAATTAGATC

Downstream 100 bases:

>100_bases
CAGGGGACTTTTTCAGGCGGATTCAGGGCCGCAAGGCCGCCCCGGGCGCGGCCTGAAAAATCTCATAAAGGGGTCGATCT
TTGACCCCGACTTCTCTATA

Product: putative ATPase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 375; Mature: 375

Protein sequence:

>375_residues
MQSLSPTSRYLLALKEGSHQPDDVQQEAVSRLDTIYQELQTQPAPVASGGGLRAKFGKLLGKREPAAGTAPVRGLYMWGG
VGRGKTWLMDLFYQSLPGERKQRLHFHRFMLRVHEELTTLQGHSDPLEIVADRFKAETDVLCFDEFFVSDITDAMLLGGL
MKALFARGITLVATSNIPPDELYRNGLQRARFLPAIDAIKQHCDIMNVDAGIDYRLRTLTQAHLWLSPLNNDTREQMDKL
WLALAGAPRAAGPTLEINHRELPTLGVENQTLAASFATLCVDARSQHDYIALSRLFHTVMLFDVPVMTAQLESEARRFIA
LVDEFYERHVKLVVSAAVPLYDIYQGERLKFEFQRCLSRLQEMQSEEYLKRPHMP

Sequences:

>Translated_375_residues
MQSLSPTSRYLLALKEGSHQPDDVQQEAVSRLDTIYQELQTQPAPVASGGGLRAKFGKLLGKREPAAGTAPVRGLYMWGG
VGRGKTWLMDLFYQSLPGERKQRLHFHRFMLRVHEELTTLQGHSDPLEIVADRFKAETDVLCFDEFFVSDITDAMLLGGL
MKALFARGITLVATSNIPPDELYRNGLQRARFLPAIDAIKQHCDIMNVDAGIDYRLRTLTQAHLWLSPLNNDTREQMDKL
WLALAGAPRAAGPTLEINHRELPTLGVENQTLAASFATLCVDARSQHDYIALSRLFHTVMLFDVPVMTAQLESEARRFIA
LVDEFYERHVKLVVSAAVPLYDIYQGERLKFEFQRCLSRLQEMQSEEYLKRPHMP
>Mature_375_residues
MQSLSPTSRYLLALKEGSHQPDDVQQEAVSRLDTIYQELQTQPAPVASGGGLRAKFGKLLGKREPAAGTAPVRGLYMWGG
VGRGKTWLMDLFYQSLPGERKQRLHFHRFMLRVHEELTTLQGHSDPLEIVADRFKAETDVLCFDEFFVSDITDAMLLGGL
MKALFARGITLVATSNIPPDELYRNGLQRARFLPAIDAIKQHCDIMNVDAGIDYRLRTLTQAHLWLSPLNNDTREQMDKL
WLALAGAPRAAGPTLEINHRELPTLGVENQTLAASFATLCVDARSQHDYIALSRLFHTVMLFDVPVMTAQLESEARRFIA
LVDEFYERHVKLVVSAAVPLYDIYQGERLKFEFQRCLSRLQEMQSEEYLKRPHMP

Specific function: Unknown

COG id: COG1485

COG function: function code R; Predicted ATPase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the AFG1 ATPase family [H]

Homologues:

Organism=Homo sapiens, GI21918872, Length=416, Percent_Identity=33.8942307692308, Blast_Score=227, Evalue=2e-59,
Organism=Escherichia coli, GI1789627, Length=374, Percent_Identity=85.2941176470588, Blast_Score=660, Evalue=0.0,
Organism=Caenorhabditis elegans, GI17505769, Length=417, Percent_Identity=31.89448441247, Blast_Score=226, Evalue=1e-59,
Organism=Saccharomyces cerevisiae, GI6320783, Length=401, Percent_Identity=30.6733167082294, Blast_Score=160, Evalue=3e-40,
Organism=Drosophila melanogaster, GI20129913, Length=425, Percent_Identity=33.1764705882353, Blast_Score=200, Evalue=1e-51,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005654 [H]

Pfam domain/function: PF03969 AFG1_ATPase [H]

EC number: NA

Molecular weight: Translated: 42496; Mature: 42496

Theoretical pI: Translated: 6.80; Mature: 6.80

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQSLSPTSRYLLALKEGSHQPDDVQQEAVSRLDTIYQELQTQPAPVASGGGLRAKFGKLL
CCCCCCCHHHEEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHH
GKREPAAGTAPVRGLYMWGGVGRGKTWLMDLFYQSLPGERKQRLHFHRFMLRVHEELTTL
CCCCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHH
QGHSDPLEIVADRFKAETDVLCFDEFFVSDITDAMLLGGLMKALFARGITLVATSNIPPD
CCCCCHHHHHHHHHCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEECCCCHH
ELYRNGLQRARFLPAIDAIKQHCDIMNVDAGIDYRLRTLTQAHLWLSPLNNDTREQMDKL
HHHHHHHHHHHHHHHHHHHHHHCCEEECCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
WLALAGAPRAAGPTLEINHRELPTLGVENQTLAASFATLCVDARSQHDYIALSRLFHTVM
HHHHCCCCCCCCCCEEECCCCCCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHH
LFDVPVMTAQLESEARRFIALVDEFYERHVKLVVSAAVPLYDIYQGERLKFEFQRCLSRL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHCCCCHHHHHHHHHHHH
QEMQSEEYLKRPHMP
HHHHHHHHHHCCCCC
>Mature Secondary Structure
MQSLSPTSRYLLALKEGSHQPDDVQQEAVSRLDTIYQELQTQPAPVASGGGLRAKFGKLL
CCCCCCCHHHEEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHH
GKREPAAGTAPVRGLYMWGGVGRGKTWLMDLFYQSLPGERKQRLHFHRFMLRVHEELTTL
CCCCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHH
QGHSDPLEIVADRFKAETDVLCFDEFFVSDITDAMLLGGLMKALFARGITLVATSNIPPD
CCCCCHHHHHHHHHCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEECCCCHH
ELYRNGLQRARFLPAIDAIKQHCDIMNVDAGIDYRLRTLTQAHLWLSPLNNDTREQMDKL
HHHHHHHHHHHHHHHHHHHHHHCCEEECCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
WLALAGAPRAAGPTLEINHRELPTLGVENQTLAASFATLCVDARSQHDYIALSRLFHTVM
HHHHCCCCCCCCCCEEECCCCCCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHH
LFDVPVMTAQLESEARRFIALVDEFYERHVKLVVSAAVPLYDIYQGERLKFEFQRCLSRL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHCCCCHHHHHHHHHHHH
QEMQSEEYLKRPHMP
HHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]