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The map label for this gene is ydeY [H]

Identifier: 238896602

GI number: 238896602

Start: 4583173

End: 4584207

Strand: Reverse

Name: ydeY [H]

Synonym: KP1_4803

Alternate gene names: 238896602

Gene position: 4584207-4583173 (Counterclockwise)

Preceding gene: 238896603

Following gene: 238896601

Centisome position: 87.34

GC content: 63.86

Gene sequence:

>1035_bases
ATGAAAACGTTACTCAAGAATCGCGAACTGAGCGCCTTCTTTGCCATCGTGGCGCTCTTTGTTGTGCTGGTGGCGCTCAA
TCCGGCCTATTTCAGCCTGCAGACCCTGGCGATGATTTTCGCCAGCTCGCAAATCCTCTGCCTGCTGGCATTGGGCGCGA
CCCTGGTGATGCTGACCCGCAATATTGACGTGTCGGTAGGCTCCACCGTTGGGCTATGCGCCATCGCCGTCGGCGTGGCG
CTGAACAACGGCTACGGGTTGGCGACGGCCATCGCCTTCGCGCTGGCGATTGGCGCGCTGGCCGGGGCGTTTAACGGCCT
GCTGGTGGTGGGGCTGCGCATCCCGGCGATCGTCGCGACGCTCGGTACGCTGGGGTTGTATCGCGGGGTGATGTTGCTGT
GGACCGGCGGGAAATGGATCGAAGGCTTGCCCGACAGCCTGAAATCGCTCTCGGAGCCCGCGTTTATCGGCGTGTCGCCG
CTGGGCTGGCTGGTGCTGGCGCTGCTGCTGGCGGGCGGCTGGCTGCTGTCGCGCACCGCCTTTGGTCGTGATTTTTACGC
CGTTGGCGATAACCTCGCCGCCGCGCGCCAGCTGGGCGTGGCGGTCAACCGCACGCGGATGCTGGCCTTTACCCTCAACG
GTATGCTGGCGGCCTGCGCCGGGATCGTCTTCGCCGCGCAGATTGGTTTTGTGCCTAATCAGACCGGCAGCGGCCTGGAG
ATGAAAGCCATCGCCGCCTGCGTACTGGGCGGGATCTCGCTGCTTGGCGGTACCGGTACGCTGCTCGGCGCGTTTCTCGG
CGCCTTTTTCCTTACCCAAATCGACACCGTACTGGTGCTGTTCCGCCTTCCCGCCTGGTGGAATGACTTTATCGCCGGTC
TGGTGCTGCTCGGCGTGCTGGTGCTCGATGGCCGCCTGCGCCAGGCGCTGGCCCGCCATCAGCGGGCGCTAAAGTACAGC
CGTTTCCAGCCCGGTAACAAAGGGGGGAAACAGGTTGCCCGCTTTCCCGAACGCAAAAGCAAAGAGGTGGCTTAA

Upstream 100 bases:

>100_bases
ACCGGGTGCTGGTGATGCATCAGGGTCGCTACAGCGGCGAGCTGGCGCGGCAGGCGGTGACCGTCGATCGCATGATGACC
CTGGCCTTCGGAGGGCAGGC

Downstream 100 bases:

>100_bases
ATGAAGCTGAAGCTTAACTGGGAAAGCGCGCTGCTGGCGTTGCTGATCGTGGAGATCCTGCTGTTCGGCGCGCTGAATCC
GCGCATGCTGGATCTCAATA

Product: putative ABC transport system permease component

Products: NA

Alternate protein names: AI-2 import system permease protein lsrC [H]

Number of amino acids: Translated: 344; Mature: 344

Protein sequence:

>344_residues
MKTLLKNRELSAFFAIVALFVVLVALNPAYFSLQTLAMIFASSQILCLLALGATLVMLTRNIDVSVGSTVGLCAIAVGVA
LNNGYGLATAIAFALAIGALAGAFNGLLVVGLRIPAIVATLGTLGLYRGVMLLWTGGKWIEGLPDSLKSLSEPAFIGVSP
LGWLVLALLLAGGWLLSRTAFGRDFYAVGDNLAAARQLGVAVNRTRMLAFTLNGMLAACAGIVFAAQIGFVPNQTGSGLE
MKAIAACVLGGISLLGGTGTLLGAFLGAFFLTQIDTVLVLFRLPAWWNDFIAGLVLLGVLVLDGRLRQALARHQRALKYS
RFQPGNKGGKQVARFPERKSKEVA

Sequences:

>Translated_344_residues
MKTLLKNRELSAFFAIVALFVVLVALNPAYFSLQTLAMIFASSQILCLLALGATLVMLTRNIDVSVGSTVGLCAIAVGVA
LNNGYGLATAIAFALAIGALAGAFNGLLVVGLRIPAIVATLGTLGLYRGVMLLWTGGKWIEGLPDSLKSLSEPAFIGVSP
LGWLVLALLLAGGWLLSRTAFGRDFYAVGDNLAAARQLGVAVNRTRMLAFTLNGMLAACAGIVFAAQIGFVPNQTGSGLE
MKAIAACVLGGISLLGGTGTLLGAFLGAFFLTQIDTVLVLFRLPAWWNDFIAGLVLLGVLVLDGRLRQALARHQRALKYS
RFQPGNKGGKQVARFPERKSKEVA
>Mature_344_residues
MKTLLKNRELSAFFAIVALFVVLVALNPAYFSLQTLAMIFASSQILCLLALGATLVMLTRNIDVSVGSTVGLCAIAVGVA
LNNGYGLATAIAFALAIGALAGAFNGLLVVGLRIPAIVATLGTLGLYRGVMLLWTGGKWIEGLPDSLKSLSEPAFIGVSP
LGWLVLALLLAGGWLLSRTAFGRDFYAVGDNLAAARQLGVAVNRTRMLAFTLNGMLAACAGIVFAAQIGFVPNQTGSGLE
MKAIAACVLGGISLLGGTGTLLGAFLGAFFLTQIDTVLVLFRLPAWWNDFIAGLVLLGVLVLDGRLRQALARHQRALKYS
RFQPGNKGGKQVARFPERKSKEVA

Specific function: Part of the ABC transporter complex lsrABCD involved in autoinducer 2 (AI-2) import. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG1172

COG function: function code G; Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the binding-protein-dependent transport system permease family. AraH/rbsC subfamily [H]

Homologues:

Organism=Escherichia coli, GI1787793, Length=340, Percent_Identity=64.4117647058824, Blast_Score=379, Evalue=1e-106,
Organism=Escherichia coli, GI1790191, Length=307, Percent_Identity=33.2247557003257, Blast_Score=128, Evalue=6e-31,
Organism=Escherichia coli, GI1789992, Length=370, Percent_Identity=27.8378378378378, Blast_Score=123, Evalue=2e-29,
Organism=Escherichia coli, GI145693152, Length=265, Percent_Identity=32.0754716981132, Blast_Score=121, Evalue=6e-29,
Organism=Escherichia coli, GI87082395, Length=282, Percent_Identity=34.0425531914894, Blast_Score=116, Evalue=2e-27,
Organism=Escherichia coli, GI1788896, Length=306, Percent_Identity=31.0457516339869, Blast_Score=115, Evalue=3e-27,
Organism=Escherichia coli, GI1787794, Length=318, Percent_Identity=30.5031446540881, Blast_Score=105, Evalue=3e-24,
Organism=Escherichia coli, GI1790524, Length=300, Percent_Identity=26.6666666666667, Blast_Score=93, Evalue=3e-20,
Organism=Escherichia coli, GI145693214, Length=254, Percent_Identity=38.5826771653543, Blast_Score=88, Evalue=1e-18,
Organism=Escherichia coli, GI1788471, Length=334, Percent_Identity=28.4431137724551, Blast_Score=82, Evalue=4e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001851 [H]

Pfam domain/function: PF02653 BPD_transp_2 [H]

EC number: NA

Molecular weight: Translated: 36067; Mature: 36067

Theoretical pI: Translated: 10.74; Mature: 10.74

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKTLLKNRELSAFFAIVALFVVLVALNPAYFSLQTLAMIFASSQILCLLALGATLVMLTR
CCCCCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHC
NIDVSVGSTVGLCAIAVGVALNNGYGLATAIAFALAIGALAGAFNGLLVVGLRIPAIVAT
CCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LGTLGLYRGVMLLWTGGKWIEGLPDSLKSLSEPAFIGVSPLGWLVLALLLAGGWLLSRTA
HHHHHHHHHHHEEECCCHHHCCCCHHHHHCCCCCEECCCHHHHHHHHHHHHCCHHHHHHH
FGRDFYAVGDNLAAARQLGVAVNRTRMLAFTLNGMLAACAGIVFAAQIGFVPNQTGSGLE
CCCCHHHHCCCHHHHHHHHHHHHHHEEEEHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCH
MKAIAACVLGGISLLGGTGTLLGAFLGAFFLTQIDTVLVLFRLPAWWNDFIAGLVLLGVL
HHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH
VLDGRLRQALARHQRALKYSRFQPGNKGGKQVARFPERKSKEVA
HHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHCCCCCCCCCC
>Mature Secondary Structure
MKTLLKNRELSAFFAIVALFVVLVALNPAYFSLQTLAMIFASSQILCLLALGATLVMLTR
CCCCCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHC
NIDVSVGSTVGLCAIAVGVALNNGYGLATAIAFALAIGALAGAFNGLLVVGLRIPAIVAT
CCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LGTLGLYRGVMLLWTGGKWIEGLPDSLKSLSEPAFIGVSPLGWLVLALLLAGGWLLSRTA
HHHHHHHHHHHEEECCCHHHCCCCHHHHHCCCCCEECCCHHHHHHHHHHHHCCHHHHHHH
FGRDFYAVGDNLAAARQLGVAVNRTRMLAFTLNGMLAACAGIVFAAQIGFVPNQTGSGLE
CCCCHHHHCCCHHHHHHHHHHHHHHEEEEHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCH
MKAIAACVLGGISLLGGTGTLLGAFLGAFFLTQIDTVLVLFRLPAWWNDFIAGLVLLGVL
HHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH
VLDGRLRQALARHQRALKYSRFQPGNKGGKQVARFPERKSKEVA
HHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA