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The map label for this gene is ygeR [H]

Identifier: 238896428

GI number: 238896428

Start: 4407421

End: 4408161

Strand: Reverse

Name: ygeR [H]

Synonym: KP1_4603

Alternate gene names: 238896428

Gene position: 4408161-4407421 (Counterclockwise)

Preceding gene: 238896430

Following gene: 238896426

Centisome position: 83.99

GC content: 59.51

Gene sequence:

>741_bases
GTGGTTGTGTTAAGTGCAGGATGCCTGATGATGAAACGCTTTTATATGACACTGATGCTGGCGGCAAGCCTGGTGCTGGC
CGGCTGCTCCAGCACCTCCGATTCCGGTGGCACCTACACCGTTAAACGCGGCGATACCCTGTACGGCATCTCCCGCACCA
CCGGCACCAGCGTTCGCGATCTGGCCCGCCTGAATAACATCTCCCCGCCTTACACCATTGAGGTGGGGCAGAAGCTGAAG
CTTAACGGCAGCAGTTCAACGAAGACAACGAAGAAAAAATCTTCCTCTACGCGCACCGCGGCGGTCACGCCTTCGTCCGC
GGTACCTCAGTCCTCCTGGCCGCCGGTGGGACAGCGCTGCTGGCGCTGGCCGACCAGCGGCAAAGTGGTCCTGCCTTATT
CCACCGCCGATGGCGGCAATAAAGGCATTGATATCGCCGGAACCCGCGGCCAGCCGGTGTATGCCGCCGGGGCGGGCAAG
GTGGTCTACGTCGGCAATCAGCTGCGCGGCTATGGCAATCTGATCATGATTAAGCACAGCGAGGATTACATCACCGCCTA
TGCCCACAACGATAAGCTAATGGTGAATAATGGCCAGAGCGTGAAGGCCGGCCAGCAAATTGCCACCATGGGCAGTACGG
ATGCCGACTCAGTGCGGCTGCATTTCCAGATCCGCTACCGGGCGACAGCCATCGATCCGCTGCGTTACCTGCCGCCGCAG
GGAAGTAAACCTAAGTGCTAA

Upstream 100 bases:

>100_bases
CCGCAGACCGCGCGCTAGGGACGGGGGATAATGGTTTCGCCATCAGGGATGACGCCCTGCGCCGCGGACTGGTATGATAT
TCGCCCTGATTGCGAGGTAA

Downstream 100 bases:

>100_bases
AAGGTTATTTTATCGCCAGTCAGCATCCGGCAGGCTTGTCACAGGGTGCGTAAGGGCTATAATGCTTCTCGCACCTCTTC
GCGGGCGTAGTTCAATGGTA

Product: putative lipoprotein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 246; Mature: 246

Protein sequence:

>246_residues
MVVLSAGCLMMKRFYMTLMLAASLVLAGCSSTSDSGGTYTVKRGDTLYGISRTTGTSVRDLARLNNISPPYTIEVGQKLK
LNGSSSTKTTKKKSSSTRTAAVTPSSAVPQSSWPPVGQRCWRWPTSGKVVLPYSTADGGNKGIDIAGTRGQPVYAAGAGK
VVYVGNQLRGYGNLIMIKHSEDYITAYAHNDKLMVNNGQSVKAGQQIATMGSTDADSVRLHFQIRYRATAIDPLRYLPPQ
GSKPKC

Sequences:

>Translated_246_residues
MVVLSAGCLMMKRFYMTLMLAASLVLAGCSSTSDSGGTYTVKRGDTLYGISRTTGTSVRDLARLNNISPPYTIEVGQKLK
LNGSSSTKTTKKKSSSTRTAAVTPSSAVPQSSWPPVGQRCWRWPTSGKVVLPYSTADGGNKGIDIAGTRGQPVYAAGAGK
VVYVGNQLRGYGNLIMIKHSEDYITAYAHNDKLMVNNGQSVKAGQQIATMGSTDADSVRLHFQIRYRATAIDPLRYLPPQ
GSKPKC
>Mature_246_residues
MVVLSAGCLMMKRFYMTLMLAASLVLAGCSSTSDSGGTYTVKRGDTLYGISRTTGTSVRDLARLNNISPPYTIEVGQKLK
LNGSSSTKTTKKKSSSTRTAAVTPSSAVPQSSWPPVGQRCWRWPTSGKVVLPYSTADGGNKGIDIAGTRGQPVYAAGAGK
VVYVGNQLRGYGNLIMIKHSEDYITAYAHNDKLMVNNGQSVKAGQQIATMGSTDADSVRLHFQIRYRATAIDPLRYLPPQ
GSKPKC

Specific function: Unknown

COG id: COG0739

COG function: function code M; Membrane proteins related to metalloendopeptidases

Gene ontology:

Cell location: Cell membrane; Lipid-anchor (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI87082174, Length=251, Percent_Identity=76.8924302788845, Blast_Score=392, Evalue=1e-110,
Organism=Escherichia coli, GI1789099, Length=261, Percent_Identity=42.911877394636, Blast_Score=206, Evalue=1e-54,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011055
- InterPro:   IPR016047
- InterPro:   IPR002886
- InterPro:   IPR018392
- InterPro:   IPR002482 [H]

Pfam domain/function: PF01476 LysM; PF01551 Peptidase_M23 [H]

EC number: NA

Molecular weight: Translated: 26322; Mature: 26322

Theoretical pI: Translated: 10.43; Mature: 10.43

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
4.9 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
3.3 %Met     (Mature Protein)
4.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVVLSAGCLMMKRFYMTLMLAASLVLAGCSSTSDSGGTYTVKRGDTLYGISRTTGTSVRD
CEEEECHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCEEEEEECCCCCHHHH
LARLNNISPPYTIEVGQKLKLNGSSSTKTTKKKSSSTRTAAVTPSSAVPQSSWPPVGQRC
HHHHCCCCCCEEEECCCEEEECCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCHHHHH
WRWPTSGKVVLPYSTADGGNKGIDIAGTRGQPVYAAGAGKVVYVGNQLRGYGNLIMIKHS
HCCCCCCEEEEEEECCCCCCCCEEEECCCCCEEEEECCCEEEEECCEECCCCCEEEEEEC
EDYITAYAHNDKLMVNNGQSVKAGQQIATMGSTDADSVRLHFQIRYRATAIDPLRYLPPQ
CCEEEEEEECCEEEEECCCCCCCCCEEEECCCCCCCEEEEEEEEEEEEEEECCHHHCCCC
GSKPKC
CCCCCC
>Mature Secondary Structure
MVVLSAGCLMMKRFYMTLMLAASLVLAGCSSTSDSGGTYTVKRGDTLYGISRTTGTSVRD
CEEEECHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCEEEEEECCCCCHHHH
LARLNNISPPYTIEVGQKLKLNGSSSTKTTKKKSSSTRTAAVTPSSAVPQSSWPPVGQRC
HHHHCCCCCCEEEECCCEEEECCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCHHHHH
WRWPTSGKVVLPYSTADGGNKGIDIAGTRGQPVYAAGAGKVVYVGNQLRGYGNLIMIKHS
HCCCCCCEEEEEEECCCCCCCCEEEECCCCCEEEEECCCEEEEECCEECCCCCEEEEEEC
EDYITAYAHNDKLMVNNGQSVKAGQQIATMGSTDADSVRLHFQIRYRATAIDPLRYLPPQ
CCEEEEEEECCEEEEECCCCCCCCCEEEECCCCCCCEEEEEEEEEEEEEEECCHHHCCCC
GSKPKC
CCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]