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The map label for this gene is tolB [H]

Identifier: 238896376

GI number: 238896376

Start: 4358330

End: 4359505

Strand: Direct

Name: tolB [H]

Synonym: KP1_4543

Alternate gene names: 238896376

Gene position: 4358330-4359505 (Clockwise)

Preceding gene: 238896375

Following gene: 238896380

Centisome position: 83.04

GC content: 57.06

Gene sequence:

>1176_bases
ATGGCTAAAGGCATGCGGGTCAAACTGAATTATCACGTCAGCCACGATCCGGATACCGGGGCGGAAGTCACCCGCTTAAC
CCCCCCGGAGGTCACCTGTCATCGCAACTACTTCTATCAGAAGTGCTTTTTTAACGATGGCAGCCATTTACTGTTCGCCG
GCGAGTTTGACGGCCACTGGAACTACTATCTGCTGAATATCGCCAGCGCCGAGGCCGTCCAGCTAACCGAAGGCGCCGGG
GATAACACCTTCGGCGGCTTCCTCTCCCCGGACGATAAGTCGCTTTATTACGTGAAAAATGACCGTATCCTGCTGGAAGT
CAACCTGACCACCCTCGCCGAGCGCGAAGTTTATCGCGTTAGCGATGACTGGGTAGGGTATGGCACCTGGGTGGCAAACA
GCGATTGCAGCAAACTGGTGGGCATTGAGATTGCCAAAAGCGACTGGACGCCACTCAACGACTGGCAGATTTTCCATGAT
TTCTTCCATAAAGGACCGCACTGCCGCCTGCTGCGCGTCGACCTGCGCAGCGGTGAGAGCCAGGTGATCCATGAGGAAAA
AATCTGGCTGGGACACCCGATCTATCGTCCCTTCGACGACCATACCGTCGCCTTCTGCCATGAAGGGCCGCACGATCTGG
TGGACGCCCGCATGTGGCTGGTCAACGAGGATGGCAGCCATGTTCGCAAAGTCAAAGCGCATGCTCCAGGCGAAAGCTGT
ACTCATGAATTTTGGGTGCCGGACGGTTCGGCGCTGATCTACGTCTCCTATCTGAAAGGCCAGCAGGGGCGGACGATCTA
TCGCTTTGATCCCGAAAGCGGCGTCAACGAGGCCCTGATGACGATGCCGGCCTGCTCGCATCTGATGAGCAATTTCGATG
GCACGCTGCTGGTAGGCGATGGCTCAGGTACACCGGTGGATGTCAAGGATACCGGCGGCTACTCCATTGATAACGATCCC
TGGCTGTATGTCTTTAACGTGGCGGAAAAGCGCTACTTCCGCGTCGCGCGCCATGATACCTCGTGGGCGACGGTGGCCAA
CAGCCGCCAGGTAACGCACCCGCACCCCTCATTTACCCCGGACGATAGCGCCATTCTGTTCAGCTCCGATAAAGACGGTA
AACCGGCCATCTATATCGCGAAATTACCCGCGCACCCGTCAATGCTGAGCGCCTGA

Upstream 100 bases:

>100_bases
TGAAACAATGTTTTGATAAATTAATACCCGTCTTTTAAAACATATCACTCAGCGACACGCCTCTGGTCCAGCGGCATCGC
AGGAAAGAAAGGAGCACTAC

Downstream 100 bases:

>100_bases
TCCACGCCACACTTTTTTCTGTAACTGGCCTTGCCCTCCTTCATGGAGGGCTTTTTTTGTCCCTTCTCTTTCCCCCATAA
AAAAACCCCGGCTGACGGCG

Product: translocation protein TolB precursor

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 391; Mature: 390

Protein sequence:

>391_residues
MAKGMRVKLNYHVSHDPDTGAEVTRLTPPEVTCHRNYFYQKCFFNDGSHLLFAGEFDGHWNYYLLNIASAEAVQLTEGAG
DNTFGGFLSPDDKSLYYVKNDRILLEVNLTTLAEREVYRVSDDWVGYGTWVANSDCSKLVGIEIAKSDWTPLNDWQIFHD
FFHKGPHCRLLRVDLRSGESQVIHEEKIWLGHPIYRPFDDHTVAFCHEGPHDLVDARMWLVNEDGSHVRKVKAHAPGESC
THEFWVPDGSALIYVSYLKGQQGRTIYRFDPESGVNEALMTMPACSHLMSNFDGTLLVGDGSGTPVDVKDTGGYSIDNDP
WLYVFNVAEKRYFRVARHDTSWATVANSRQVTHPHPSFTPDDSAILFSSDKDGKPAIYIAKLPAHPSMLSA

Sequences:

>Translated_391_residues
MAKGMRVKLNYHVSHDPDTGAEVTRLTPPEVTCHRNYFYQKCFFNDGSHLLFAGEFDGHWNYYLLNIASAEAVQLTEGAG
DNTFGGFLSPDDKSLYYVKNDRILLEVNLTTLAEREVYRVSDDWVGYGTWVANSDCSKLVGIEIAKSDWTPLNDWQIFHD
FFHKGPHCRLLRVDLRSGESQVIHEEKIWLGHPIYRPFDDHTVAFCHEGPHDLVDARMWLVNEDGSHVRKVKAHAPGESC
THEFWVPDGSALIYVSYLKGQQGRTIYRFDPESGVNEALMTMPACSHLMSNFDGTLLVGDGSGTPVDVKDTGGYSIDNDP
WLYVFNVAEKRYFRVARHDTSWATVANSRQVTHPHPSFTPDDSAILFSSDKDGKPAIYIAKLPAHPSMLSA
>Mature_390_residues
AKGMRVKLNYHVSHDPDTGAEVTRLTPPEVTCHRNYFYQKCFFNDGSHLLFAGEFDGHWNYYLLNIASAEAVQLTEGAGD
NTFGGFLSPDDKSLYYVKNDRILLEVNLTTLAEREVYRVSDDWVGYGTWVANSDCSKLVGIEIAKSDWTPLNDWQIFHDF
FHKGPHCRLLRVDLRSGESQVIHEEKIWLGHPIYRPFDDHTVAFCHEGPHDLVDARMWLVNEDGSHVRKVKAHAPGESCT
HEFWVPDGSALIYVSYLKGQQGRTIYRFDPESGVNEALMTMPACSHLMSNFDGTLLVGDGSGTPVDVKDTGGYSIDNDPW
LYVFNVAEKRYFRVARHDTSWATVANSRQVTHPHPSFTPDDSAILFSSDKDGKPAIYIAKLPAHPSMLSA

Specific function: Involved in degradation of pectin, which causes soft-rod disease in plants [H]

COG id: COG0823

COG function: function code U; Periplasmic component of the Tol biopolymer transport system

Gene ontology:

Cell location: Periplasm (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011659
- InterPro:   IPR015943 [H]

Pfam domain/function: PF07676 PD40 [H]

EC number: =4.2.2.6 [H]

Molecular weight: Translated: 44105; Mature: 43973

Theoretical pI: Translated: 5.94; Mature: 5.94

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAKGMRVKLNYHVSHDPDTGAEVTRLTPPEVTCHRNYFYQKCFFNDGSHLLFAGEFDGHW
CCCCEEEEEEEEECCCCCCCCEEEECCCCCEEECCCEEEEEEEECCCCEEEEEEEECCCE
NYYLLNIASAEAVQLTEGAGDNTFGGFLSPDDKSLYYVKNDRILLEVNLTTLAEREVYRV
EEEEEEECCCCEEEEECCCCCCCCCCCCCCCCCEEEEEECCEEEEEEECCEECCCEEEEE
SDDWVGYGTWVANSDCSKLVGIEIAKSDWTPLNDWQIFHDFFHKGPHCRLLRVDLRSGES
CCCCEEEEEEEECCCCCEEEEEEEECCCCCCCCCHHHHHHHHCCCCCEEEEEEEECCCCC
QVIHEEKIWLGHPIYRPFDDHTVAFCHEGPHDLVDARMWLVNEDGSHVRKVKAHAPGESC
EEEEECEEEECCCCCCCCCCCEEEEECCCCHHHCCEEEEEEECCCCCEEEEEECCCCCCC
THEFWVPDGSALIYVSYLKGQQGRTIYRFDPESGVNEALMTMPACSHLMSNFDGTLLVGD
CEEEECCCCCEEEEEEEECCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEC
GSGTPVDVKDTGGYSIDNDPWLYVFNVAEKRYFRVARHDTSWATVANSRQVTHPHPSFTP
CCCCEEEEECCCCCCCCCCCEEEEEEECCCEEEEEEECCCCEEEEECCCCCCCCCCCCCC
DDSAILFSSDKDGKPAIYIAKLPAHPSMLSA
CCCEEEEECCCCCCCEEEEEECCCCCHHCCC
>Mature Secondary Structure 
AKGMRVKLNYHVSHDPDTGAEVTRLTPPEVTCHRNYFYQKCFFNDGSHLLFAGEFDGHW
CCCEEEEEEEEECCCCCCCCEEEECCCCCEEECCCEEEEEEEECCCCEEEEEEEECCCE
NYYLLNIASAEAVQLTEGAGDNTFGGFLSPDDKSLYYVKNDRILLEVNLTTLAEREVYRV
EEEEEEECCCCEEEEECCCCCCCCCCCCCCCCCEEEEEECCEEEEEEECCEECCCEEEEE
SDDWVGYGTWVANSDCSKLVGIEIAKSDWTPLNDWQIFHDFFHKGPHCRLLRVDLRSGES
CCCCEEEEEEEECCCCCEEEEEEEECCCCCCCCCHHHHHHHHCCCCCEEEEEEEECCCCC
QVIHEEKIWLGHPIYRPFDDHTVAFCHEGPHDLVDARMWLVNEDGSHVRKVKAHAPGESC
EEEEECEEEECCCCCCCCCCCEEEEECCCCHHHCCEEEEEEECCCCCEEEEEECCCCCCC
THEFWVPDGSALIYVSYLKGQQGRTIYRFDPESGVNEALMTMPACSHLMSNFDGTLLVGD
CEEEECCCCCEEEEEEEECCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEC
GSGTPVDVKDTGGYSIDNDPWLYVFNVAEKRYFRVARHDTSWATVANSRQVTHPHPSFTP
CCCCEEEEECCCCCCCCCCCEEEEEEECCCEEEEEEECCCCEEEEECCCCCCCCCCCCCC
DDSAILFSSDKDGKPAIYIAKLPAHPSMLSA
CCCEEEEECCCCCCCEEEEEECCCCCHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 2695393 [H]