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The map label for this gene is ygdQ [H]

Identifier: 238896349

GI number: 238896349

Start: 4329016

End: 4329729

Strand: Direct

Name: ygdQ [H]

Synonym: KP1_4513

Alternate gene names: 238896349

Gene position: 4329016-4329729 (Clockwise)

Preceding gene: 238896348

Following gene: 238896350

Centisome position: 82.48

GC content: 54.9

Gene sequence:

>714_bases
ATGTTATTTGCATGGATAACCGATCCTAACGCCTGGCTGGCGCTGGGCACATTGACGCTGCTGGAGATCGTGCTCGGGAT
CGACAATATTATTTTCCTCTCTCTGGTCGTGGCTAAGCTCCCCACCGCCCAGCGCGCCCATGCGCGCCGGATCGGTTTGA
TGGGCGCGATGGTCATGCGTCTGGCGCTGCTGGCCTCAATCGCCTGGGTCGTTAAGCTTACCAACCCGCTCTTTACCGTT
TTCGGTCAGGAGATCTCGTTTCGCGATCTGATCTTGCTGCTCGGCGGGCTATTCCTTATCTGGAAAGCCAGTAAAGAGAT
CCATGAATCTATCGAAGGTGAAGAGGAGGGGCTGAAGACCAACGTCCACTCCTTCCTCGGCGCCATCGTGCAGATCATGC
TGCTGGATATCATCTTTAGCCTCGATTCAGTGATCACCGCCGTCGGCCTGTCGGATCATCTGTTCATCATGATGGCGGCA
GTGGTGATCGCGGTGGGGGTGATGATGTTCGCCGCGCGACCCATCGGCGATTTTGTTGACCGTCATCCTTCGGTGAAAAT
GCTGGCGCTGTCGTTTCTGATCCTCGTCGGCTTTACCCTGATGCTGGAAAGCTTCGACGTCCATGTGCCGAAGGGATACA
TCTATTTCGCCATGTTCTTCTCTATCGCGGTGGAGAGCCTTAACCTGCTGCGTAATAAGAAAAACCCGCTGTAA

Upstream 100 bases:

>100_bases
TCTGCTTGCCCGCCATTTCTTGTTACAACACGATTAATTTTTTGTTCTGCGTTGGGGGTTGCATATAATTGCTGCTTTCT
ATTTTGCAGGACTTTGAACA

Downstream 100 bases:

>100_bases
ACCACAAAATTGCAGCCTGGTCACAGGCTGCAACCCTTTTTCAGACTTTACTGCTTTTTATGTCTCACAAATCAGGCTAT
TAATAGACGGGTATGGGGTG

Product: putative integral membrane transport protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 237; Mature: 237

Protein sequence:

>237_residues
MLFAWITDPNAWLALGTLTLLEIVLGIDNIIFLSLVVAKLPTAQRAHARRIGLMGAMVMRLALLASIAWVVKLTNPLFTV
FGQEISFRDLILLLGGLFLIWKASKEIHESIEGEEEGLKTNVHSFLGAIVQIMLLDIIFSLDSVITAVGLSDHLFIMMAA
VVIAVGVMMFAARPIGDFVDRHPSVKMLALSFLILVGFTLMLESFDVHVPKGYIYFAMFFSIAVESLNLLRNKKNPL

Sequences:

>Translated_237_residues
MLFAWITDPNAWLALGTLTLLEIVLGIDNIIFLSLVVAKLPTAQRAHARRIGLMGAMVMRLALLASIAWVVKLTNPLFTV
FGQEISFRDLILLLGGLFLIWKASKEIHESIEGEEEGLKTNVHSFLGAIVQIMLLDIIFSLDSVITAVGLSDHLFIMMAA
VVIAVGVMMFAARPIGDFVDRHPSVKMLALSFLILVGFTLMLESFDVHVPKGYIYFAMFFSIAVESLNLLRNKKNPL
>Mature_237_residues
MLFAWITDPNAWLALGTLTLLEIVLGIDNIIFLSLVVAKLPTAQRAHARRIGLMGAMVMRLALLASIAWVVKLTNPLFTV
FGQEISFRDLILLLGGLFLIWKASKEIHESIEGEEEGLKTNVHSFLGAIVQIMLLDIIFSLDSVITAVGLSDHLFIMMAA
VVIAVGVMMFAARPIGDFVDRHPSVKMLALSFLILVGFTLMLESFDVHVPKGYIYFAMFFSIAVESLNLLRNKKNPL

Specific function: Unknown

COG id: COG0861

COG function: function code P; Membrane protein TerC, possibly involved in tellurium resistance

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0053 family [H]

Homologues:

Organism=Escherichia coli, GI1789197, Length=237, Percent_Identity=94.0928270042194, Blast_Score=421, Evalue=1e-119,
Organism=Escherichia coli, GI1788119, Length=232, Percent_Identity=49.1379310344828, Blast_Score=223, Evalue=7e-60,
Organism=Escherichia coli, GI87082033, Length=228, Percent_Identity=51.3157894736842, Blast_Score=217, Evalue=6e-58,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005496 [H]

Pfam domain/function: PF03741 TerC [H]

EC number: NA

Molecular weight: Translated: 26228; Mature: 26228

Theoretical pI: Translated: 6.81; Mature: 6.81

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
5.1 %Met     (Translated Protein)
5.1 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
5.1 %Met     (Mature Protein)
5.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLFAWITDPNAWLALGTLTLLEIVLGIDNIIFLSLVVAKLPTAQRAHARRIGLMGAMVMR
CEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
LALLASIAWVVKLTNPLFTVFGQEISFRDLILLLGGLFLIWKASKEIHESIEGEEEGLKT
HHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHH
NVHSFLGAIVQIMLLDIIFSLDSVITAVGLSDHLFIMMAAVVIAVGVMMFAARPIGDFVD
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHH
RHPSVKMLALSFLILVGFTLMLESFDVHVPKGYIYFAMFFSIAVESLNLLRNKKNPL
CCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCC
>Mature Secondary Structure
MLFAWITDPNAWLALGTLTLLEIVLGIDNIIFLSLVVAKLPTAQRAHARRIGLMGAMVMR
CEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
LALLASIAWVVKLTNPLFTVFGQEISFRDLILLLGGLFLIWKASKEIHESIEGEEEGLKT
HHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHH
NVHSFLGAIVQIMLLDIIFSLDSVITAVGLSDHLFIMMAAVVIAVGVMMFAARPIGDFVD
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHH
RHPSVKMLALSFLILVGFTLMLESFDVHVPKGYIYFAMFFSIAVESLNLLRNKKNPL
CCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]