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The map label for this gene is pduS [H]

Identifier: 238896324

GI number: 238896324

Start: 4299698

End: 4301050

Strand: Direct

Name: pduS [H]

Synonym: KP1_4487

Alternate gene names: 238896324

Gene position: 4299698-4301050 (Clockwise)

Preceding gene: 238896323

Following gene: 238896325

Centisome position: 81.92

GC content: 64.6

Gene sequence:

>1353_bases
ATGAGTGAAGCGATAGTGCCACTATCAAGCATTGATGCGACGGAGATCCGCGAACGCGTTCGGGCCGCTGGCGTCGTAGG
AGCCGGTGGCGCAGGCTTTCCGACCCACATCAAACTGCAGGCCCGGGTGGACACCGTGCTGGTGAACGCCGCCGAATGCG
AACCGATGCTGAAGGTTGACCAACAGCTGATGGCTCAGCAGGCTGACCGACTGATTCGCGGCCTGGGTTACGCGATGACC
GCCACTGGCGCCCGGGAAGGGATCATTGCCCTGAAGGCGAAATATGCTCCGGCGATTGCGGCACTAACCCCACGACTCCC
GGAATGGGCCCGGCTGCATATTCTGCCTGACGTCTATCCGGCCGGGGATGAGGTGCTCACTATCTGGCTGGCGACGGGAC
GCCGCGTACCACCTGCCGCGCTGCCGGTCAGCGTCGGCGTGGTGGTCAATAACGTGCAGACCGTGCTCAATATCGCCAGA
GCCGTGGAACAGGGCTATCCGGTGACTCGCCGGACGTTGACCGTCAATGGCGCCGTCGCCCGTCCGCTGACGCTGGCCGT
ACCACTGGGTATATCGCTGCGCGAGGTGCTGGATCTGGCCGGCGGCGCGACGGTTGACGATCCGGGGTTTATCAACGGCG
GTCCGATGATGGGCTCGCTTATTACCTCCCTCGAGACACCGGTCACCAAAACCACCGGCGGCCTGCTGGTGCTCCCGGGC
AACCATCCATTGATCCAGCGACGGCGGCAGGATGAACGAACGCTGCTCGCCATCGCCCGCACCGTCTGTGAACAGTGCCG
TTTATGCACAGATTTATGCCCCCGGCACCTGATCGGCCATGAGCTTTCCCCTCATCTGCTGGTGCGGGCGGTGAACTATC
GCCAGGCGGCCACCCCGTCGCTGCTGCTCAGCGCCCTGACCTGTTCGGAGTGCAACGTTTGCGAGAGCGTCGCCTGCCCG
GTGGGTATTTCCCCCATGCGCATCAACCGTCTGCTGAAACGTGAGCTGAGGGCGAAAAACCTGCGCTACGACGGACCGCT
GCGTCCGGCGGACGAGATGGCGAAGCACCGCCTGGTGCCGGTCAAGCGGCTCATCAGCAAACTGGGACTTGATCCCTGGT
ATCAGGAAGCGCCGCTGACGGCGGTGGAGCCGGAGGTGGCCTGCGTCACCCTGCCCCTGCGCCAGCATATCGGCATCAGC
GCCGTGCCCTGCGTCGCGCCGGGAGAGCGGGTAACGCGCGGCCAGCTACTGGCGGATATCCCCGCCGACGCCCTCGGCGC
GCCGGTGCACGCCAGTATTGACGGCCTGGTCTCCGCCATCACGGAGCAGGCCATTACGCTTGTAAGAGGTTAA

Upstream 100 bases:

>100_bases
TTCCCGCCATGGTGCCGGCCGCGCTGGCCGACGCCACCCTGCGCACCAACCCGCGTCCGGTCGATGGCGCGGCCATCGCG
CAACTGCTGGAGAACCTGCA

Downstream 100 bases:

>100_bases
TCATGACCCAGGCTATCGGAATTTTAGAACTGACCAGCATCGCCAGGGGGATGGAGCTGGGTGACGTCATGCTGAAAAGC
GCGAACGTACAGCTCCTGCT

Product: propanediol utilization polyhedral body protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 450; Mature: 449

Protein sequence:

>450_residues
MSEAIVPLSSIDATEIRERVRAAGVVGAGGAGFPTHIKLQARVDTVLVNAAECEPMLKVDQQLMAQQADRLIRGLGYAMT
ATGAREGIIALKAKYAPAIAALTPRLPEWARLHILPDVYPAGDEVLTIWLATGRRVPPAALPVSVGVVVNNVQTVLNIAR
AVEQGYPVTRRTLTVNGAVARPLTLAVPLGISLREVLDLAGGATVDDPGFINGGPMMGSLITSLETPVTKTTGGLLVLPG
NHPLIQRRRQDERTLLAIARTVCEQCRLCTDLCPRHLIGHELSPHLLVRAVNYRQAATPSLLLSALTCSECNVCESVACP
VGISPMRINRLLKRELRAKNLRYDGPLRPADEMAKHRLVPVKRLISKLGLDPWYQEAPLTAVEPEVACVTLPLRQHIGIS
AVPCVAPGERVTRGQLLADIPADALGAPVHASIDGLVSAITEQAITLVRG

Sequences:

>Translated_450_residues
MSEAIVPLSSIDATEIRERVRAAGVVGAGGAGFPTHIKLQARVDTVLVNAAECEPMLKVDQQLMAQQADRLIRGLGYAMT
ATGAREGIIALKAKYAPAIAALTPRLPEWARLHILPDVYPAGDEVLTIWLATGRRVPPAALPVSVGVVVNNVQTVLNIAR
AVEQGYPVTRRTLTVNGAVARPLTLAVPLGISLREVLDLAGGATVDDPGFINGGPMMGSLITSLETPVTKTTGGLLVLPG
NHPLIQRRRQDERTLLAIARTVCEQCRLCTDLCPRHLIGHELSPHLLVRAVNYRQAATPSLLLSALTCSECNVCESVACP
VGISPMRINRLLKRELRAKNLRYDGPLRPADEMAKHRLVPVKRLISKLGLDPWYQEAPLTAVEPEVACVTLPLRQHIGIS
AVPCVAPGERVTRGQLLADIPADALGAPVHASIDGLVSAITEQAITLVRG
>Mature_449_residues
SEAIVPLSSIDATEIRERVRAAGVVGAGGAGFPTHIKLQARVDTVLVNAAECEPMLKVDQQLMAQQADRLIRGLGYAMTA
TGAREGIIALKAKYAPAIAALTPRLPEWARLHILPDVYPAGDEVLTIWLATGRRVPPAALPVSVGVVVNNVQTVLNIARA
VEQGYPVTRRTLTVNGAVARPLTLAVPLGISLREVLDLAGGATVDDPGFINGGPMMGSLITSLETPVTKTTGGLLVLPGN
HPLIQRRRQDERTLLAIARTVCEQCRLCTDLCPRHLIGHELSPHLLVRAVNYRQAATPSLLLSALTCSECNVCESVACPV
GISPMRINRLLKRELRAKNLRYDGPLRPADEMAKHRLVPVKRLISKLGLDPWYQEAPLTAVEPEVACVTLPLRQHIGISA
VPCVAPGERVTRGQLLADIPADALGAPVHASIDGLVSAITEQAITLVRG

Specific function: May be part of a membrane complex involved in electron transport [H]

COG id: COG4656

COG function: function code C; Predicted NADH:ubiquinone oxidoreductase, subunit RnfC

Gene ontology:

Cell location: Cell inner membrane; Peripheral membrane protein [H]

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 4Fe-4S ferredoxin-type domains [H]

Homologues:

Organism=Escherichia coli, GI1787916, Length=330, Percent_Identity=33.030303030303, Blast_Score=152, Evalue=3e-38,
Organism=Escherichia coli, GI1788620, Length=239, Percent_Identity=28.0334728033473, Blast_Score=69, Evalue=9e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR017896
- InterPro:   IPR017900
- InterPro:   IPR010208
- InterPro:   IPR012285
- InterPro:   IPR009051
- InterPro:   IPR011538
- InterPro:   IPR019554 [H]

Pfam domain/function: PF01512 Complex1_51K; PF10531 SLBB [H]

EC number: NA

Molecular weight: Translated: 48053; Mature: 47922

Theoretical pI: Translated: 8.62; Mature: 8.62

Prosite motif: PS00198 4FE4S_FERREDOXIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.4 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
2.4 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSEAIVPLSSIDATEIRERVRAAGVVGAGGAGFPTHIKLQARVDTVLVNAAECEPMLKVD
CCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCEEEEEEEECEEEEEHHHCCHHHHHH
QQLMAQQADRLIRGLGYAMTATGAREGIIALKAKYAPAIAALTPRLPEWARLHILPDVYP
HHHHHHHHHHHHHHCCHHHCCCCCCCCEEEEEECCCCHHHHHCCCCCCCEEEEECCCCCC
AGDEVLTIWLATGRRVPPAALPVSVGVVVNNVQTVLNIARAVEQGYPVTRRTLTVNGAVA
CCCCEEEEEEECCCCCCCCCCCEEHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCC
RPLTLAVPLGISLREVLDLAGGATVDDPGFINGGPMMGSLITSLETPVTKTTGGLLVLPG
CCEEEEEECCCCHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHCCCCEECCCCEEEECC
NHPLIQRRRQDERTLLAIARTVCEQCRLCTDLCPRHLIGHELSPHLLVRAVNYRQAATPS
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHEECCCHHHCCHH
LLLSALTCSECNVCESVACPVGISPMRINRLLKRELRAKNLRYDGPLRPADEMAKHRLVP
HHHHHHHCCCCCHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHCCHH
VKRLISKLGLDPWYQEAPLTAVEPEVACVTLPLRQHIGISAVPCVAPGERVTRGQLLADI
HHHHHHHHCCCCCCCCCCCCEECCCEEEEEECHHHCCCCCCCCCCCCCCCCCCCCCEECC
PADALGAPVHASIDGLVSAITEQAITLVRG
CHHHHCCCCHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
SEAIVPLSSIDATEIRERVRAAGVVGAGGAGFPTHIKLQARVDTVLVNAAECEPMLKVD
CCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCEEEEEEEECEEEEEHHHCCHHHHHH
QQLMAQQADRLIRGLGYAMTATGAREGIIALKAKYAPAIAALTPRLPEWARLHILPDVYP
HHHHHHHHHHHHHHCCHHHCCCCCCCCEEEEEECCCCHHHHHCCCCCCCEEEEECCCCCC
AGDEVLTIWLATGRRVPPAALPVSVGVVVNNVQTVLNIARAVEQGYPVTRRTLTVNGAVA
CCCCEEEEEEECCCCCCCCCCCEEHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCC
RPLTLAVPLGISLREVLDLAGGATVDDPGFINGGPMMGSLITSLETPVTKTTGGLLVLPG
CCEEEEEECCCCHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHCCCCEECCCCEEEECC
NHPLIQRRRQDERTLLAIARTVCEQCRLCTDLCPRHLIGHELSPHLLVRAVNYRQAATPS
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHEECCCHHHCCHH
LLLSALTCSECNVCESVACPVGISPMRINRLLKRELRAKNLRYDGPLRPADEMAKHRLVP
HHHHHHHCCCCCHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHCCHH
VKRLISKLGLDPWYQEAPLTAVEPEVACVTLPLRQHIGISAVPCVAPGERVTRGQLLADI
HHHHHHHHCCCCCCCCCCCCEECCCEEEEEECHHHCCCCCCCCCCCCCCCCCCCCCEECC
PADALGAPVHASIDGLVSAITEQAITLVRG
CHHHHCCCCHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: 4Fe-4S clusters [C]

Metal ions: Iron-Sulfur [C]

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: NA