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The map label for this gene is ygdD [H]

Identifier: 238896279

GI number: 238896279

Start: 4262640

End: 4263035

Strand: Reverse

Name: ygdD [H]

Synonym: KP1_4438

Alternate gene names: 238896279

Gene position: 4263035-4262640 (Counterclockwise)

Preceding gene: 238896280

Following gene: 238896278

Centisome position: 81.22

GC content: 55.05

Gene sequence:

>396_bases
ATGACCAGCCGTTTTATGCTGATATTCGCCGCGATTAGCGGCTTTATCTTTGTGGCTCTGGGCGCCTTTGGCGCGCATGT
CTTAAGTCAATCGCTCGGCGCGGCGGAGATGGCCTGGATCCATACCGGCCTGGAGTATCAGGCCTTCCATACCCTGGCGA
TTTTTGGTCTGGCGGTGGCGATGCAGCGTCGGATCAGTATCTGGTTCTACTGGAGCAGCGTATTTCTGGCGTTAGGGACC
GTGCTGTTCAGCGGCAGCCTCTATTGTCTGGCGCTCTCTCATTTACGTCTGTGGGCGTTCGTGACCCCGGTGGGCGGCGT
AAGCTTCCTCGCCGGTTGGGTTTTAATGTTAATTGGTGCAATTCGTCTGAAACGTAAGGGCGTTGTTCATGAATAA

Upstream 100 bases:

>100_bases
AAAATAGCCGCTTTCCGGCAGTGGATCCTGGCGAAAGCGGCAAGTGAACAAGAAAAATTCCGCTTTCGTTATGAACAATA
ATTACTTGTAGGGTAACAAC

Downstream 100 bases:

>100_bases
GGTTGTCCTCTATTGTCGCCCTGGGTTTGAGAAAGAGTGCGCAGCAGAAATTACCGATAAGGCAGCCCGCCTTGAGGTGT
TTGGTTTTGCCCGGGTCAAA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 131; Mature: 130

Protein sequence:

>131_residues
MTSRFMLIFAAISGFIFVALGAFGAHVLSQSLGAAEMAWIHTGLEYQAFHTLAIFGLAVAMQRRISIWFYWSSVFLALGT
VLFSGSLYCLALSHLRLWAFVTPVGGVSFLAGWVLMLIGAIRLKRKGVVHE

Sequences:

>Translated_131_residues
MTSRFMLIFAAISGFIFVALGAFGAHVLSQSLGAAEMAWIHTGLEYQAFHTLAIFGLAVAMQRRISIWFYWSSVFLALGT
VLFSGSLYCLALSHLRLWAFVTPVGGVSFLAGWVLMLIGAIRLKRKGVVHE
>Mature_130_residues
TSRFMLIFAAISGFIFVALGAFGAHVLSQSLGAAEMAWIHTGLEYQAFHTLAIFGLAVAMQRRISIWFYWSSVFLALGTV
LFSGSLYCLALSHLRLWAFVTPVGGVSFLAGWVLMLIGAIRLKRKGVVHE

Specific function: Unknown

COG id: COG2363

COG function: function code S; Uncharacterized small membrane protein

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0382 family [H]

Homologues:

Organism=Escherichia coli, GI1789172, Length=131, Percent_Identity=92.3664122137405, Blast_Score=239, Evalue=5e-65,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006696 [H]

Pfam domain/function: PF04241 DUF423 [H]

EC number: NA

Molecular weight: Translated: 14384; Mature: 14253

Theoretical pI: Translated: 10.56; Mature: 10.56

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
3.8 %Met     (Translated Protein)
4.6 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTSRFMLIFAAISGFIFVALGAFGAHVLSQSLGAAEMAWIHTGLEYQAFHTLAIFGLAVA
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCCHHHHHHHHHHHHHHH
MQRRISIWFYWSSVFLALGTVLFSGSLYCLALSHLRLWAFVTPVGGVSFLAGWVLMLIGA
HHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
IRLKRKGVVHE
HHHHCCCCCCC
>Mature Secondary Structure 
TSRFMLIFAAISGFIFVALGAFGAHVLSQSLGAAEMAWIHTGLEYQAFHTLAIFGLAVA
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCCHHHHHHHHHHHHHHH
MQRRISIWFYWSSVFLALGTVLFSGSLYCLALSHLRLWAFVTPVGGVSFLAGWVLMLIGA
HHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
IRLKRKGVVHE
HHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]