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The map label for this gene is nlpD [H]

Identifier: 238896222

GI number: 238896222

Start: 4195660

End: 4196790

Strand: Reverse

Name: nlpD [H]

Synonym: KP1_4374

Alternate gene names: 238896222

Gene position: 4196790-4195660 (Counterclockwise)

Preceding gene: 238896223

Following gene: 238896221

Centisome position: 79.96

GC content: 56.68

Gene sequence:

>1131_bases
ATGAGCGCGGGAAGCACCAAATTTACCGTCAGCCGTATTGCGGCTCTTTCACTGGTTTCACTCTGGCTGGCCGGGTGTAC
CAACACCAATAATCCGCCTGCGCCGGTTAGCTCTGCCGGCGGCGCCGCCTCTTCCAGCACCAACTCCGGCATGCTGATTA
CGCCGCCACCCTCCGGCGTCAAGTCCGCTCCTCAGGCGCAGCCGATTCAGCCGATGCAGACCCAGACCATTCAGCCGGCG
CCGGTGGCGCAGGAGCCGGTACAGACGGTAAATGGCCGGATCGTTTACAACCGCAAATATGGCGATATTCCGAAAGGTAG
CTATACCGGCGGCAGTACCTATACGGTAAAACGCGGCGACACGCTATTCTATATCGCCTGGGTCACCGGCAACGATTTCC
GCGACCTGGCGCAACGTAACAATATCCCGGCCCCGTACGCGCTGAACGTGGGGCAGGTACTGCAGGTCGGTAACGCCTCA
GGCCAGCCGATCACCGGCGAAAACGCCGTTTCTCAGGCCAGCGCAAGAGCGAGCGGCGGTGCGACGACCAGCACAACTTC
TGCACAAAAATCGACCGCGGTGGTTGCTTCACAACCGACTATTACGTATTCTGAATCTTCAGGTGAACAGAGTGCTACCA
AGATGTTGCCTAATAATAAACCAGCGACCACAACCACAACGGTTGTCGCGCCGGTGACGGCACCAACAACGGTGAGCACA
ACCCAGCCGACTGCAAGCAGTACGTCAACCAGTTCGCCGATCTCAGCATGGCGCTGGCCGACTGATGGCAAGGTTATCGA
GAACTTTAGCGGCGCGGAAGGCGGCAATAAAGGCATCGATATTGCAGGCAGTAAGGGACAGGCTATTGTCGCGACCGCCG
ATGGGCGCGTCGTCTATGCCGGTAACGCACTGCGCGGCTACGGTAATCTTATTATCATCAAACACAACGATGATTACCTG
AGTGCCTACGCTCATAACGATACCATGCTGGTTCGGGAGCAACAGGAAGTCAAAGCGGGGCAGAAAATCGCTACCATGGG
TAGCACCGGAACCAGCTCAACAAGATTACATTTTGAAATTCGTTACAAGGGGAAATCCGTCAACCCGCTGCAGTACTTAC
CGCAGCGATAA

Upstream 100 bases:

>100_bases
TGCCTGACTTTAGGCGTAGGGTGGACACATTTTTCAGTGTCCTGGCCGGGCGCCGCCCGGTAAGCAAGATATTGGCAGTT
AACATATTCCTGGGGGATAA

Downstream 100 bases:

>100_bases
TTTGGCAAAGTACGGATAAGCGAAGCATCAGCTAACAGGCGCCAGGGCGGTGTCTACGTTCCTCTCGCAGAGAGGGCAGG
GGAAATCGTCCAGGCGTCGT

Product: lipoprotein NlpD

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 376; Mature: 375

Protein sequence:

>376_residues
MSAGSTKFTVSRIAALSLVSLWLAGCTNTNNPPAPVSSAGGAASSSTNSGMLITPPPSGVKSAPQAQPIQPMQTQTIQPA
PVAQEPVQTVNGRIVYNRKYGDIPKGSYTGGSTYTVKRGDTLFYIAWVTGNDFRDLAQRNNIPAPYALNVGQVLQVGNAS
GQPITGENAVSQASARASGGATTSTTSAQKSTAVVASQPTITYSESSGEQSATKMLPNNKPATTTTTVVAPVTAPTTVST
TQPTASSTSTSSPISAWRWPTDGKVIENFSGAEGGNKGIDIAGSKGQAIVATADGRVVYAGNALRGYGNLIIIKHNDDYL
SAYAHNDTMLVREQQEVKAGQKIATMGSTGTSSTRLHFEIRYKGKSVNPLQYLPQR

Sequences:

>Translated_376_residues
MSAGSTKFTVSRIAALSLVSLWLAGCTNTNNPPAPVSSAGGAASSSTNSGMLITPPPSGVKSAPQAQPIQPMQTQTIQPA
PVAQEPVQTVNGRIVYNRKYGDIPKGSYTGGSTYTVKRGDTLFYIAWVTGNDFRDLAQRNNIPAPYALNVGQVLQVGNAS
GQPITGENAVSQASARASGGATTSTTSAQKSTAVVASQPTITYSESSGEQSATKMLPNNKPATTTTTVVAPVTAPTTVST
TQPTASSTSTSSPISAWRWPTDGKVIENFSGAEGGNKGIDIAGSKGQAIVATADGRVVYAGNALRGYGNLIIIKHNDDYL
SAYAHNDTMLVREQQEVKAGQKIATMGSTGTSSTRLHFEIRYKGKSVNPLQYLPQR
>Mature_375_residues
SAGSTKFTVSRIAALSLVSLWLAGCTNTNNPPAPVSSAGGAASSSTNSGMLITPPPSGVKSAPQAQPIQPMQTQTIQPAP
VAQEPVQTVNGRIVYNRKYGDIPKGSYTGGSTYTVKRGDTLFYIAWVTGNDFRDLAQRNNIPAPYALNVGQVLQVGNASG
QPITGENAVSQASARASGGATTSTTSAQKSTAVVASQPTITYSESSGEQSATKMLPNNKPATTTTTVVAPVTAPTTVSTT
QPTASSTSTSSPISAWRWPTDGKVIENFSGAEGGNKGIDIAGSKGQAIVATADGRVVYAGNALRGYGNLIIIKHNDDYLS
AYAHNDTMLVREQQEVKAGQKIATMGSTGTSSTRLHFEIRYKGKSVNPLQYLPQR

Specific function: May be involved in stationary-phase survival [H]

COG id: COG0739

COG function: function code M; Membrane proteins related to metalloendopeptidases

Gene ontology:

Cell location: Cell inner membrane; Lipid-anchor (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 LysM repeat [H]

Homologues:

Organism=Escherichia coli, GI1789099, Length=386, Percent_Identity=72.7979274611399, Blast_Score=511, Evalue=1e-146,
Organism=Escherichia coli, GI87082174, Length=271, Percent_Identity=44.280442804428, Blast_Score=202, Evalue=3e-53,
Organism=Escherichia coli, GI87082297, Length=142, Percent_Identity=35.9154929577465, Blast_Score=78, Evalue=8e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011055
- InterPro:   IPR016047
- InterPro:   IPR002886
- InterPro:   IPR018392
- InterPro:   IPR002482 [H]

Pfam domain/function: PF01476 LysM; PF01551 Peptidase_M23 [H]

EC number: NA

Molecular weight: Translated: 39104; Mature: 38973

Theoretical pI: Translated: 10.09; Mature: 10.09

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
1.9 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
1.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSAGSTKFTVSRIAALSLVSLWLAGCTNTNNPPAPVSSAGGAASSSTNSGMLITPPPSGV
CCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCC
KSAPQAQPIQPMQTQTIQPAPVAQEPVQTVNGRIVYNRKYGDIPKGSYTGGSTYTVKRGD
CCCCCCCCCCCHHHCCCCCCCCCHHHHHHHCCEEEEECCCCCCCCCCCCCCCEEEEECCC
TLFYIAWVTGNDFRDLAQRNNIPAPYALNVGQVLQVGNASGQPITGENAVSQASARASGG
EEEEEEEEECCCHHHHHHHCCCCCCEEECHHHHEEECCCCCCCCCCCHHHHHHHHHCCCC
ATTSTTSAQKSTAVVASQPTITYSESSGEQSATKMLPNNKPATTTTTVVAPVTAPTTVST
CCCCCCCCCCCEEEEECCCEEEECCCCCCHHHHHCCCCCCCCCEEEEEEEECCCCCEECC
TQPTASSTSTSSPISAWRWPTDGKVIENFSGAEGGNKGIDIAGSKGQAIVATADGRVVYA
CCCCCCCCCCCCCCCEEECCCCCHHEECCCCCCCCCCCEEEECCCCCEEEEECCCEEEEE
GNALRGYGNLIIIKHNDDYLSAYAHNDTMLVREQQEVKAGQKIATMGSTGTSSTRLHFEI
CCCCCCCCCEEEEEECCCEEEEEECCCEEEEECHHHHHCCCEEEEECCCCCCCEEEEEEE
RYKGKSVNPLQYLPQR
EECCCCCCHHHHCCCC
>Mature Secondary Structure 
SAGSTKFTVSRIAALSLVSLWLAGCTNTNNPPAPVSSAGGAASSSTNSGMLITPPPSGV
CCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCC
KSAPQAQPIQPMQTQTIQPAPVAQEPVQTVNGRIVYNRKYGDIPKGSYTGGSTYTVKRGD
CCCCCCCCCCCHHHCCCCCCCCCHHHHHHHCCEEEEECCCCCCCCCCCCCCCEEEEECCC
TLFYIAWVTGNDFRDLAQRNNIPAPYALNVGQVLQVGNASGQPITGENAVSQASARASGG
EEEEEEEEECCCHHHHHHHCCCCCCEEECHHHHEEECCCCCCCCCCCHHHHHHHHHCCCC
ATTSTTSAQKSTAVVASQPTITYSESSGEQSATKMLPNNKPATTTTTVVAPVTAPTTVST
CCCCCCCCCCCEEEEECCCEEEECCCCCCHHHHHCCCCCCCCCEEEEEEEECCCCCEECC
TQPTASSTSTSSPISAWRWPTDGKVIENFSGAEGGNKGIDIAGSKGQAIVATADGRVVYA
CCCCCCCCCCCCCCCEEECCCCCHHEECCCCCCCCCCCEEEECCCCCEEEEECCCEEEEE
GNALRGYGNLIIIKHNDDYLSAYAHNDTMLVREQQEVKAGQKIATMGSTGTSSTRLHFEI
CCCCCCCCCEEEEEECCCEEEEEECCCEEEEECHHHHHCCCEEEEECCCCCCCEEEEEEE
RYKGKSVNPLQYLPQR
EECCCCCCHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9973354 [H]