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The map label for this gene is vdcC [H]

Identifier: 238896215

GI number: 238896215

Start: 4189275

End: 4190702

Strand: Reverse

Name: vdcC [H]

Synonym: KP1_4367

Alternate gene names: 238896215

Gene position: 4190702-4189275 (Counterclockwise)

Preceding gene: 238896216

Following gene: 238896214

Centisome position: 79.85

GC content: 58.26

Gene sequence:

>1428_bases
ATGGCTTTTGATGATTTGCGCAGCTTTTTGCAGGCGCTGGATGACCAGGGACAACTGCTGAAAATCAGTGAAGAGGTGAA
CGCTGAGCCCGATCTGGCGGCGGCCGCCAATGCGACCGGACGCATCGGCGACGGTGCCCCGGCGCTGTGGTTCGATAATA
TTCGCGGCTTTAACGACGCTCGCGTGACGATGAACACCATCGGCTCGTGGCAGAACCATGCCATCTCGCTGGGCCTGCCG
CCTAACACGCCGGTGAAAAAGCAGATTGATGAGTTCATTCGCCGCTGGGATAACTTCCCGGTGACGCCAGAGCGCCGCGC
CAACCCGGCGTGGGCAGAAAATACTGTTGATGGCGATGATATCAACCTGTTCGATATTCTGCCGCTGTTCCGCCTCAACG
ATGGTGACGGCGGTTTCTACCTCGATAAAGCCTGTGTCGTTTCGCGCGATCCGCTGGATAAAGATAACTTCGGTAAGCAA
AACGTCGGTATCTACCGCATGGAAGTGAAAGGCAAGCGCAAGCTCGGCCTGCAGCCGGTACCGATGCACGATATCGCGCT
GCATCTGCACAAAGCGGAAGAGCGTGGGGAAGATCTGCCGATCGCCATTACCCTGGGTAACGACCCGATTATTACCCTGA
TGGGCGCCACGCCGCTGAAATACGATCAGTCTGAATATGAGATGGCTGGCGCGCTGCGCGAGAGCCCGTATCCCATCGCT
ACCGCGCCGCTGACCGGCTTTGACGTGCCCTGGGGTTCGGAAGTGATCCTCGAAGGGGTCATTGAAGGGCGTAAGCGTGA
GATCGAGGGGCCGTTCGGTGAATTTACCGGTCACTACTCCGGCGGTCGTAACATGACGGTAGTGCGTATCGACAAAGTCT
CTTATCGCAGCAAACCGATTTTTGAATCGCTCTACCTCGGTATGCCGTGGACCGAGATTGACTATCTGATGGGCCCGGCG
ACCTGCGTACCGCTGTATCAGCAGCTGAAGGCCGAATTTCCGGAGGTGCAGGCGGTCAACGCCATGTACACCCATGGTCT
GCTGGCGATCATCTCCACCAAAAAACGCTACGGCGGTTTTGCCCGCGCGGTGGGCCTGCGGGCGATGACCACTCCCCACG
GCCTCGGCTATGTGAAGATGGTGATCATGGTTGATGAAGACGTCGACCCGTTCAACCTGCCGCAGGTGATGTGGGCGCTC
TCCTCGAAGGTTAACCCGGCGGGAGACCTGGTGCAGTTGCCGAACATGTCGGTCCTTGAACTTGACCCAGGCTCCAGCCC
GGCAGGCATTACCGACAAACTGATTATCGACGCCACCACCCCGGTTGCGCCGGACCTTCGCGGCCACTACAGCCAGCCGG
TGCAGGATCTGCCGGAAACCAAAGCCTGGGCTGAAAAACTGACCGCTATGCTGGCCAACCGTAAATAA

Upstream 100 bases:

>100_bases
TCGTCACCCGGGTGCTGGATCAGTTTGGCCTCGACTATCACAAAGCGCGCCGCTGGAACGGCTTGCGCACGGCAGAACAA
TTTGCACAGGAGATCGAATA

Downstream 100 bases:

>100_bases
GGAGAAGAAGATGATTTGTCCACGTTGCGCCGATGAAAAGATTGAAGTCATGGCGACCTCGCCGGTGAAAGGGGTCTGGA
CCGTGTATCAGTGCCAGCAC

Product: putative 3-polyprenyl-4-hydroxybenzoate decarboxylase and related decarboxylase

Products: 2-octaprenylphenol; CO2 [C]

Alternate protein names: NA

Number of amino acids: Translated: 475; Mature: 474

Protein sequence:

>475_residues
MAFDDLRSFLQALDDQGQLLKISEEVNAEPDLAAAANATGRIGDGAPALWFDNIRGFNDARVTMNTIGSWQNHAISLGLP
PNTPVKKQIDEFIRRWDNFPVTPERRANPAWAENTVDGDDINLFDILPLFRLNDGDGGFYLDKACVVSRDPLDKDNFGKQ
NVGIYRMEVKGKRKLGLQPVPMHDIALHLHKAEERGEDLPIAITLGNDPIITLMGATPLKYDQSEYEMAGALRESPYPIA
TAPLTGFDVPWGSEVILEGVIEGRKREIEGPFGEFTGHYSGGRNMTVVRIDKVSYRSKPIFESLYLGMPWTEIDYLMGPA
TCVPLYQQLKAEFPEVQAVNAMYTHGLLAIISTKKRYGGFARAVGLRAMTTPHGLGYVKMVIMVDEDVDPFNLPQVMWAL
SSKVNPAGDLVQLPNMSVLELDPGSSPAGITDKLIIDATTPVAPDLRGHYSQPVQDLPETKAWAEKLTAMLANRK

Sequences:

>Translated_475_residues
MAFDDLRSFLQALDDQGQLLKISEEVNAEPDLAAAANATGRIGDGAPALWFDNIRGFNDARVTMNTIGSWQNHAISLGLP
PNTPVKKQIDEFIRRWDNFPVTPERRANPAWAENTVDGDDINLFDILPLFRLNDGDGGFYLDKACVVSRDPLDKDNFGKQ
NVGIYRMEVKGKRKLGLQPVPMHDIALHLHKAEERGEDLPIAITLGNDPIITLMGATPLKYDQSEYEMAGALRESPYPIA
TAPLTGFDVPWGSEVILEGVIEGRKREIEGPFGEFTGHYSGGRNMTVVRIDKVSYRSKPIFESLYLGMPWTEIDYLMGPA
TCVPLYQQLKAEFPEVQAVNAMYTHGLLAIISTKKRYGGFARAVGLRAMTTPHGLGYVKMVIMVDEDVDPFNLPQVMWAL
SSKVNPAGDLVQLPNMSVLELDPGSSPAGITDKLIIDATTPVAPDLRGHYSQPVQDLPETKAWAEKLTAMLANRK
>Mature_474_residues
AFDDLRSFLQALDDQGQLLKISEEVNAEPDLAAAANATGRIGDGAPALWFDNIRGFNDARVTMNTIGSWQNHAISLGLPP
NTPVKKQIDEFIRRWDNFPVTPERRANPAWAENTVDGDDINLFDILPLFRLNDGDGGFYLDKACVVSRDPLDKDNFGKQN
VGIYRMEVKGKRKLGLQPVPMHDIALHLHKAEERGEDLPIAITLGNDPIITLMGATPLKYDQSEYEMAGALRESPYPIAT
APLTGFDVPWGSEVILEGVIEGRKREIEGPFGEFTGHYSGGRNMTVVRIDKVSYRSKPIFESLYLGMPWTEIDYLMGPAT
CVPLYQQLKAEFPEVQAVNAMYTHGLLAIISTKKRYGGFARAVGLRAMTTPHGLGYVKMVIMVDEDVDPFNLPQVMWALS
SKVNPAGDLVQLPNMSVLELDPGSSPAGITDKLIIDATTPVAPDLRGHYSQPVQDLPETKAWAEKLTAMLANRK

Specific function: Unknown

COG id: COG0043

COG function: function code H; 3-polyprenyl-4-hydroxybenzoate decarboxylase and related decarboxylases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ubiD family [H]

Homologues:

Organism=Escherichia coli, GI1790277, Length=496, Percent_Identity=28.0241935483871, Blast_Score=176, Evalue=3e-45,
Organism=Saccharomyces cerevisiae, GI6320748, Length=449, Percent_Identity=26.0579064587973, Blast_Score=103, Evalue=5e-23,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002830
- InterPro:   IPR009002 [H]

Pfam domain/function: PF01977 UbiD [H]

EC number: NA

Molecular weight: Translated: 52463; Mature: 52331

Theoretical pI: Translated: 4.82; Mature: 4.82

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAFDDLRSFLQALDDQGQLLKISEEVNAEPDLAAAANATGRIGDGAPALWFDNIRGFNDA
CCHHHHHHHHHHHCCCCCEEEEHHHCCCCCCHHHHCCCCCCCCCCCCEEEECCCCCCCCC
RVTMNTIGSWQNHAISLGLPPNTPVKKQIDEFIRRWDNFPVTPERRANPAWAENTVDGDD
EEEEECCCCCCCCEEEECCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCC
INLFDILPLFRLNDGDGGFYLDKACVVSRDPLDKDNFGKQNVGIYRMEVKGKRKLGLQPV
CCCEEECEEEEEECCCCCEEECCEEEECCCCCCCCCCCCCCCCEEEEEECCCHHCCCCCC
PMHDIALHLHKAEERGEDLPIAITLGNDPIITLMGATPLKYDQSEYEMAGALRESPYPIA
CHHHHHHHHHHHHHCCCCCCEEEEECCCCEEEEECCCCCCCCCHHHHHHHHHHCCCCCEE
TAPLTGFDVPWGSEVILEGVIEGRKREIEGPFGEFTGHYSGGRNMTVVRIDKVSYRSKPI
ECCCCCCCCCCCHHHHHHHHHCCCHHHCCCCHHHCCCCCCCCCEEEEEEEECCCCCCCCC
FESLYLGMPWTEIDYLMGPATCVPLYQQLKAEFPEVQAVNAMYTHGLLAIISTKKRYGGF
HHHHHCCCCHHHHHHHHCCHHHHHHHHHHHHCCCCHHHHHHHHHCCEEEEEECHHHHCCH
ARAVGLRAMTTPHGLGYVKMVIMVDEDVDPFNLPQVMWALSSKVNPAGDLVQLPNMSVLE
HHHHCCEEECCCCCCCEEEEEEEEECCCCCCCHHHHHHHHHCCCCCCCCEEECCCCEEEE
LDPGSSPAGITDKLIIDATTPVAPDLRGHYSQPVQDLPETKAWAEKLTAMLANRK
ECCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCHHHCCHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
AFDDLRSFLQALDDQGQLLKISEEVNAEPDLAAAANATGRIGDGAPALWFDNIRGFNDA
CHHHHHHHHHHHCCCCCEEEEHHHCCCCCCHHHHCCCCCCCCCCCCEEEECCCCCCCCC
RVTMNTIGSWQNHAISLGLPPNTPVKKQIDEFIRRWDNFPVTPERRANPAWAENTVDGDD
EEEEECCCCCCCCEEEECCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCC
INLFDILPLFRLNDGDGGFYLDKACVVSRDPLDKDNFGKQNVGIYRMEVKGKRKLGLQPV
CCCEEECEEEEEECCCCCEEECCEEEECCCCCCCCCCCCCCCCEEEEEECCCHHCCCCCC
PMHDIALHLHKAEERGEDLPIAITLGNDPIITLMGATPLKYDQSEYEMAGALRESPYPIA
CHHHHHHHHHHHHHCCCCCCEEEEECCCCEEEEECCCCCCCCCHHHHHHHHHHCCCCCEE
TAPLTGFDVPWGSEVILEGVIEGRKREIEGPFGEFTGHYSGGRNMTVVRIDKVSYRSKPI
ECCCCCCCCCCCHHHHHHHHHCCCHHHCCCCHHHCCCCCCCCCEEEEEEEECCCCCCCCC
FESLYLGMPWTEIDYLMGPATCVPLYQQLKAEFPEVQAVNAMYTHGLLAIISTKKRYGGF
HHHHHCCCCHHHHHHHHCCHHHHHHHHHHHHCCCCHHHHHHHHHCCEEEEEECHHHHCCH
ARAVGLRAMTTPHGLGYVKMVIMVDEDVDPFNLPQVMWALSSKVNPAGDLVQLPNMSVLE
HHHHCCEEECCCCCCCEEEEEEEEECCCCCCCHHHHHHHHHCCCCCCCCEEECCCCEEEE
LDPGSSPAGITDKLIIDATTPVAPDLRGHYSQPVQDLPETKAWAEKLTAMLANRK
ECCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCHHHCCHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: 3-octaprenyl-4-hydroxybenzoate [C]

Specific reaction: 3-octaprenyl-4-hydroxybenzoate = 2-octaprenylphenol + CO2 [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA