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The map label for this gene is nrdF [H]

Identifier: 238896131

GI number: 238896131

Start: 4101432

End: 4102433

Strand: Direct

Name: nrdF [H]

Synonym: KP1_4270

Alternate gene names: 238896131

Gene position: 4101432-4102433 (Clockwise)

Preceding gene: 238896130

Following gene: 238896132

Centisome position: 78.14

GC content: 57.19

Gene sequence:

>1002_bases
TTGAAGGCTGCGTGTCCTGCGCGCTGTAAGGAGAACAGGATGACCCATTTAACGCGCGTCAGCGCAATCAACTGGAACCG
CATTGATGACGATAAAGATCTTGAGGTCTGGAACCGTCTCACCAGCAACTTCTGGCTGCCGGAGAAAGTGCCGCTGTCGA
ACGACATTCCCGCCTGGCAAACCCTCAGCGCGGCGGAGCAGCAGTTGACCATTCGCGTCTTTACCGGATTGACCCTGCTT
GACACCATTCAGAACACCGTCGGCGCCCCGGCGCTAATGGCGGACGCCTTAACCCCGCATGAGGAGGCGGTGCTGTCGAA
CATCAGCTTTATGGAGGCGGTTCATGCCCGCTCTTACAGCTCCATCTTTTCCACGCTGTGCCACAGCAAGGAAGTGGATG
CCGCCTTCGCCTGGAGCGAAAGCTGCGATCCTCTGCAGCGCAAGGCGCAGCTGATGCTGGGTTACTATCAGGCCGACGAG
CCGCTGAAGAAAAAAATCGCCAGCGTGTTCCTCGAATCCTTTCTCTTCTACTCCGGCTTCTGGCTGCCGATGTACTTCTC
CAGCCGGGGAAAGCTGACCAACACTGCGGATCTGATCCGCCTGATCATTCGCGATGAAGCGGTGCATGGCTATTACATCG
GCTACAAGTACCAGAAAGGACTGGAGATCGTCAGCCCCGGCAAGCGCGAAGAATTGAAAAATTTCGCCCTCGATCTGCTG
ATGGATCTTTACGACAACGAACTGGCCTACAGCCGGGAGCTGTACGGCGAGAGCGGCTGGTTCGACGACGTCAGCGCTTT
CCTGTGCTACAACGCCAACAAAGCGCTGATGAACCTCGGCTACGAGGCGCTGTTCCCGGCGGAGATGGCGGCGGTCAATC
CGGCAATCCTCGCAGCGCTGTCGCCCAACGCCGACGAAAACCATGACTTTTTCTCCGGTTCCGGCTCCTCCTACGTGATA
GGAAAAATGGAAGAGACCGCCGACGACGATTGGGACTTTTAA

Upstream 100 bases:

>100_bases
ACCCGCGATATCAACAAGGCGCAAATTTACGCCTGGAAGAAAGGCATCAAGACGCTCTACTACATCCGTCTGCGCCAGCT
GGCGCTGGAAGGCACTGAAA

Downstream 100 bases:

>100_bases
CCGTACTTTCACCAGGAATATCGCAGGCGGATTCCTGGTGATTAATTTCACAAAATAGCGTTTAATCCACCAAATATTCT
CTCCATGACCTAACCGTCAT

Product: ribonucleotide-diphosphate reductase subunit beta

Products: NA

Alternate protein names: R2F protein; Ribonucleotide reductase 2 [H]

Number of amino acids: Translated: 333; Mature: 333

Protein sequence:

>333_residues
MKAACPARCKENRMTHLTRVSAINWNRIDDDKDLEVWNRLTSNFWLPEKVPLSNDIPAWQTLSAAEQQLTIRVFTGLTLL
DTIQNTVGAPALMADALTPHEEAVLSNISFMEAVHARSYSSIFSTLCHSKEVDAAFAWSESCDPLQRKAQLMLGYYQADE
PLKKKIASVFLESFLFYSGFWLPMYFSSRGKLTNTADLIRLIIRDEAVHGYYIGYKYQKGLEIVSPGKREELKNFALDLL
MDLYDNELAYSRELYGESGWFDDVSAFLCYNANKALMNLGYEALFPAEMAAVNPAILAALSPNADENHDFFSGSGSSYVI
GKMEETADDDWDF

Sequences:

>Translated_333_residues
MKAACPARCKENRMTHLTRVSAINWNRIDDDKDLEVWNRLTSNFWLPEKVPLSNDIPAWQTLSAAEQQLTIRVFTGLTLL
DTIQNTVGAPALMADALTPHEEAVLSNISFMEAVHARSYSSIFSTLCHSKEVDAAFAWSESCDPLQRKAQLMLGYYQADE
PLKKKIASVFLESFLFYSGFWLPMYFSSRGKLTNTADLIRLIIRDEAVHGYYIGYKYQKGLEIVSPGKREELKNFALDLL
MDLYDNELAYSRELYGESGWFDDVSAFLCYNANKALMNLGYEALFPAEMAAVNPAILAALSPNADENHDFFSGSGSSYVI
GKMEETADDDWDF
>Mature_333_residues
MKAACPARCKENRMTHLTRVSAINWNRIDDDKDLEVWNRLTSNFWLPEKVPLSNDIPAWQTLSAAEQQLTIRVFTGLTLL
DTIQNTVGAPALMADALTPHEEAVLSNISFMEAVHARSYSSIFSTLCHSKEVDAAFAWSESCDPLQRKAQLMLGYYQADE
PLKKKIASVFLESFLFYSGFWLPMYFSSRGKLTNTADLIRLIIRDEAVHGYYIGYKYQKGLEIVSPGKREELKNFALDLL
MDLYDNELAYSRELYGESGWFDDVSAFLCYNANKALMNLGYEALFPAEMAAVNPAILAALSPNADENHDFFSGSGSSYVI
GKMEETADDDWDF

Specific function: Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides. R2F contains the tyrosyl radical required for catalysis [H]

COG id: COG0208

COG function: function code F; Ribonucleotide reductase, beta subunit

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ribonucleoside diphosphate reductase small chain family [H]

Homologues:

Organism=Escherichia coli, GI1789031, Length=317, Percent_Identity=82.9652996845426, Blast_Score=558, Evalue=1e-160,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009078
- InterPro:   IPR012348
- InterPro:   IPR000358 [H]

Pfam domain/function: PF00268 Ribonuc_red_sm [H]

EC number: =1.17.4.1 [H]

Molecular weight: Translated: 37600; Mature: 37600

Theoretical pI: Translated: 4.51; Mature: 4.51

Prosite motif: PS00368 RIBORED_SMALL

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
4.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKAACPARCKENRMTHLTRVSAINWNRIDDDKDLEVWNRLTSNFWLPEKVPLSNDIPAWQ
CCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCHH
TLSAAEQQLTIRVFTGLTLLDTIQNTVGAPALMADALTPHEEAVLSNISFMEAVHARSYS
HHHHHHHHEEEEEHHCHHHHHHHHHHHCCCHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH
SIFSTLCHSKEVDAAFAWSESCDPLQRKAQLMLGYYQADEPLKKKIASVFLESFLFYSGF
HHHHHHHCCCCCCHHCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCC
WLPMYFSSRGKLTNTADLIRLIIRDEAVHGYYIGYKYQKGLEIVSPGKREELKNFALDLL
HHEEEECCCCCCCHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCCCCHHHHHHHHHHHH
MDLYDNELAYSRELYGESGWFDDVSAFLCYNANKALMNLGYEALFPAEMAAVNPAILAAL
HHHHCCHHHHHHHHCCCCCCHHHHHHHHHCCCCHHHHHCCHHHHCCHHHHHCCHHHEEEE
SPNADENHDFFSGSGSSYVIGKMEETADDDWDF
CCCCCCCCCCCCCCCCEEEEECCHHCCCCCCCC
>Mature Secondary Structure
MKAACPARCKENRMTHLTRVSAINWNRIDDDKDLEVWNRLTSNFWLPEKVPLSNDIPAWQ
CCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCHH
TLSAAEQQLTIRVFTGLTLLDTIQNTVGAPALMADALTPHEEAVLSNISFMEAVHARSYS
HHHHHHHHEEEEEHHCHHHHHHHHHHHCCCHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH
SIFSTLCHSKEVDAAFAWSESCDPLQRKAQLMLGYYQADEPLKKKIASVFLESFLFYSGF
HHHHHHHCCCCCCHHCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCC
WLPMYFSSRGKLTNTADLIRLIIRDEAVHGYYIGYKYQKGLEIVSPGKREELKNFALDLL
HHEEEECCCCCCCHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCCCCHHHHHHHHHHHH
MDLYDNELAYSRELYGESGWFDDVSAFLCYNANKALMNLGYEALFPAEMAAVNPAILAAL
HHHHCCHHHHHHHHCCCCCCHHHHHHHHHCCCCHHHHHCCHHHHCCHHHHHCCHHHEEEE
SPNADENHDFFSGSGSSYVIGKMEETADDDWDF
CCCCCCCCCCCCCCCCEEEEECCHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8195103; 11677609; 2691838; 2548994; 9748343 [H]