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The map label for this gene is stpA [H]

Identifier: 238896121

GI number: 238896121

Start: 4093970

End: 4094371

Strand: Reverse

Name: stpA [H]

Synonym: KP1_4260

Alternate gene names: 238896121

Gene position: 4094371-4093970 (Counterclockwise)

Preceding gene: 238896122

Following gene: 238896119

Centisome position: 78.01

GC content: 51.49

Gene sequence:

>402_bases
ATGTCTTCAATGTTACACAAACTGAATAATATCCGTTCACTGCGTGCCCTGTCCCGTGAATTCTCCATTGACGTGCTTGA
AGAGATGCTGGAAAAGCTCAGGATCGTCACTGAAGAAAAACGTACGCAACAGCAGCAGGCAGCTCAGCAGCAGGCTGAAT
ATCAGGAGAAAGTGAATACCTGGCTTGAGCTGATGCGCGCCGACGGTATTTCTCCTGACGAGCTGGTGGCCGATATTCAG
CCGCCAAAGGCGGGAGGCAAAAAGCGTCAACCGCGCCCGGCGAAATATCGTTATACCGATCATACTGGCGCAGAGAAAAC
CTGGACCGGACAGGGAAGAATGCCGAAGCCGATTGCCGAGGCTGTCGCCCAGGGTAAATCGCTGGATAGCTTTTTAATTT
AA

Upstream 100 bases:

>100_bases
TATATTTATCTGGACAGCCGAAGGCTGGAAATAAATAAACGTTTCTATTACACTTGCCGCGTTGTATCTTTTAATTTGCT
ATTTGGAATTTTTTAATTTT

Downstream 100 bases:

>100_bases
CGCCTTCGGGCCAGCGCCAGCCCGGTGGTGAGAGACCCACCGGCCTGGCCTTATGACTTTAAGCGAGGGGCTTTAGCAGA
CGCCGAAGTCTCCCTCTTCC

Product: DNA binding protein, nucleoid-associated

Products: NA

Alternate protein names: H-NS homolog stpA [H]

Number of amino acids: Translated: 133; Mature: 132

Protein sequence:

>133_residues
MSSMLHKLNNIRSLRALSREFSIDVLEEMLEKLRIVTEEKRTQQQQAAQQQAEYQEKVNTWLELMRADGISPDELVADIQ
PPKAGGKKRQPRPAKYRYTDHTGAEKTWTGQGRMPKPIAEAVAQGKSLDSFLI

Sequences:

>Translated_133_residues
MSSMLHKLNNIRSLRALSREFSIDVLEEMLEKLRIVTEEKRTQQQQAAQQQAEYQEKVNTWLELMRADGISPDELVADIQ
PPKAGGKKRQPRPAKYRYTDHTGAEKTWTGQGRMPKPIAEAVAQGKSLDSFLI
>Mature_132_residues
SSMLHKLNNIRSLRALSREFSIDVLEEMLEKLRIVTEEKRTQQQQAAQQQAEYQEKVNTWLELMRADGISPDELVADIQP
PKAGGKKRQPRPAKYRYTDHTGAEKTWTGQGRMPKPIAEAVAQGKSLDSFLI

Specific function: It may act in a fashion similar to H-NS proteins [H]

COG id: COG2916

COG function: function code R; DNA-binding protein H-NS

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the histone-like protein H-NS family [H]

Homologues:

Organism=Escherichia coli, GI1789023, Length=135, Percent_Identity=65.9259259259259, Blast_Score=176, Evalue=5e-46,
Organism=Escherichia coli, GI1787489, Length=135, Percent_Identity=51.1111111111111, Blast_Score=118, Evalue=2e-28,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001801 [H]

Pfam domain/function: PF00816 Histone_HNS [H]

EC number: NA

Molecular weight: Translated: 15179; Mature: 15047

Theoretical pI: Translated: 9.81; Mature: 9.81

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.8 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSSMLHKLNNIRSLRALSREFSIDVLEEMLEKLRIVTEEKRTQQQQAAQQQAEYQEKVNT
CHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
WLELMRADGISPDELVADIQPPKAGGKKRQPRPAKYRYTDHTGAEKTWTGQGRMPKPIAE
HHHHHHHCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCHHHH
AVAQGKSLDSFLI
HHHCCCCCHHHCC
>Mature Secondary Structure 
SSMLHKLNNIRSLRALSREFSIDVLEEMLEKLRIVTEEKRTQQQQAAQQQAEYQEKVNT
HHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
WLELMRADGISPDELVADIQPPKAGGKKRQPRPAKYRYTDHTGAEKTWTGQGRMPKPIAE
HHHHHHHCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCHHHH
AVAQGKSLDSFLI
HHHCCCCCHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]