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The map label for this gene is yhjC [H]

Identifier: 238896067

GI number: 238896067

Start: 4033938

End: 4034822

Strand: Reverse

Name: yhjC [H]

Synonym: KP1_4200

Alternate gene names: 238896067

Gene position: 4034822-4033938 (Counterclockwise)

Preceding gene: 238896069

Following gene: 238896066

Centisome position: 76.88

GC content: 60.23

Gene sequence:

>885_bases
GTGGATCGTATTCAGGCTATGCAGATGTTTATGCGCGTCGCGGAGGCAGGAAGCTTCGTGCGTGCCGCGGAAACCCTTTC
CCTGCCGGCCTCCACTGTCACCAGTACCATTAAAAACCTTGAAAAATACCTGAAGGTGCGGCTGCTGAACCGGACCACAA
GGCGGGTGAGCCTTACCCCGGAAGGGATGCAGTATCTGGCGCAGTGCCGGGAAATTCTCGCCCTCATCGAACATAGTGAA
TCCACCCTGAGCGAGTCTGTCGCGCGGCCTCAGGGGCGCCTGCGGGTTGATATGCCCGCGGGCATCGCGCATTTCATCGT
CATGCCGCATCTGCCGGACTTTTACCGGCGCTATCCCGATATCTACCTGATGATCGGCGTCAGCGATCGCCAGGTCGATC
TCATTCAGGAAGGCGTCGACTGCGTGATACGAACGGGAGAGCTGAACAATTCCAGCCTGGTGGCCCGCCCTCTGGGCCAC
TTTCGCTGGGTGACCTGCGCGTCACCGGACTATCTTCGGGAATATGGCGTGCCCCCGTCACCGGAGGCGCTCTCTCAGCA
CCGGGCTGTGCATTATTTCTCCGGTCAGGCGAGGCGGGCCGATGAGTTCCGCTTCGTTCGCCATGGCGAGACCTTTTCTG
TACCCGTCAGCGGCAACGCCGCGGTGAATGAAACGGGGCTCTATATAAAAATGTGCCTGGCAGGATTTGGGCTGGCGCAG
TTGGCGGAGAATATCGTTGCTGACCACCTGCAGGAGGGGAGACTGGTGGAAGTGCTGACGGACTGGCAGCCGCCCCCGGT
ACCCGTCACATTGCTCTATCCGCACCAGCGCTTTCTCTCTCCCGCCGTGCGGGCGTTTGCTGAGTGGATGAGCGAGGTGG
TTTGA

Upstream 100 bases:

>100_bases
GATTAAGCGTAAAAAGGTGCGTAAATTGTTTTCATTATTCATAATACACGAATAATCATGCCGTCTGTCGGTAAGCTGCT
CGCTACAGGAGAGAAAGAAG

Downstream 100 bases:

>100_bases
GGGGAGTATTGCTTGCATTTAGCGCTTCGCGATGGAGGGTAGGGTTCCAGCAGAAATATCTGGTCTGCTGATGAATCGCT
CGATATTCTGTAATGCTTTG

Product: putative LysR-family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 294; Mature: 294

Protein sequence:

>294_residues
MDRIQAMQMFMRVAEAGSFVRAAETLSLPASTVTSTIKNLEKYLKVRLLNRTTRRVSLTPEGMQYLAQCREILALIEHSE
STLSESVARPQGRLRVDMPAGIAHFIVMPHLPDFYRRYPDIYLMIGVSDRQVDLIQEGVDCVIRTGELNNSSLVARPLGH
FRWVTCASPDYLREYGVPPSPEALSQHRAVHYFSGQARRADEFRFVRHGETFSVPVSGNAAVNETGLYIKMCLAGFGLAQ
LAENIVADHLQEGRLVEVLTDWQPPPVPVTLLYPHQRFLSPAVRAFAEWMSEVV

Sequences:

>Translated_294_residues
MDRIQAMQMFMRVAEAGSFVRAAETLSLPASTVTSTIKNLEKYLKVRLLNRTTRRVSLTPEGMQYLAQCREILALIEHSE
STLSESVARPQGRLRVDMPAGIAHFIVMPHLPDFYRRYPDIYLMIGVSDRQVDLIQEGVDCVIRTGELNNSSLVARPLGH
FRWVTCASPDYLREYGVPPSPEALSQHRAVHYFSGQARRADEFRFVRHGETFSVPVSGNAAVNETGLYIKMCLAGFGLAQ
LAENIVADHLQEGRLVEVLTDWQPPPVPVTLLYPHQRFLSPAVRAFAEWMSEVV
>Mature_294_residues
MDRIQAMQMFMRVAEAGSFVRAAETLSLPASTVTSTIKNLEKYLKVRLLNRTTRRVSLTPEGMQYLAQCREILALIEHSE
STLSESVARPQGRLRVDMPAGIAHFIVMPHLPDFYRRYPDIYLMIGVSDRQVDLIQEGVDCVIRTGELNNSSLVARPLGH
FRWVTCASPDYLREYGVPPSPEALSQHRAVHYFSGQARRADEFRFVRHGETFSVPVSGNAAVNETGLYIKMCLAGFGLAQ
LAENIVADHLQEGRLVEVLTDWQPPPVPVTLLYPHQRFLSPAVRAFAEWMSEVV

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI145693193, Length=294, Percent_Identity=38.7755102040816, Blast_Score=218, Evalue=3e-58,
Organism=Escherichia coli, GI1786401, Length=298, Percent_Identity=35.2348993288591, Blast_Score=166, Evalue=2e-42,
Organism=Escherichia coli, GI1789639, Length=293, Percent_Identity=30.7167235494881, Blast_Score=142, Evalue=2e-35,
Organism=Escherichia coli, GI1787128, Length=283, Percent_Identity=29.3286219081272, Blast_Score=134, Evalue=6e-33,
Organism=Escherichia coli, GI1787589, Length=291, Percent_Identity=28.8659793814433, Blast_Score=129, Evalue=2e-31,
Organism=Escherichia coli, GI1789440, Length=264, Percent_Identity=29.5454545454545, Blast_Score=119, Evalue=2e-28,
Organism=Escherichia coli, GI87081978, Length=295, Percent_Identity=30.8474576271186, Blast_Score=114, Evalue=9e-27,
Organism=Escherichia coli, GI1789173, Length=259, Percent_Identity=28.957528957529, Blast_Score=90, Evalue=2e-19,
Organism=Escherichia coli, GI1788706, Length=302, Percent_Identity=24.5033112582781, Blast_Score=78, Evalue=7e-16,
Organism=Escherichia coli, GI1787806, Length=161, Percent_Identity=31.6770186335404, Blast_Score=72, Evalue=5e-14,
Organism=Escherichia coli, GI1790011, Length=262, Percent_Identity=22.9007633587786, Blast_Score=69, Evalue=3e-13,
Organism=Escherichia coli, GI1786713, Length=286, Percent_Identity=27.2727272727273, Blast_Score=67, Evalue=1e-12,
Organism=Escherichia coli, GI1788748, Length=149, Percent_Identity=32.2147651006711, Blast_Score=66, Evalue=3e-12,
Organism=Escherichia coli, GI1786448, Length=182, Percent_Identity=27.4725274725275, Blast_Score=65, Evalue=5e-12,
Organism=Escherichia coli, GI87082132, Length=290, Percent_Identity=25.8620689655172, Blast_Score=64, Evalue=8e-12,
Organism=Escherichia coli, GI145693105, Length=172, Percent_Identity=26.7441860465116, Blast_Score=64, Evalue=8e-12,
Organism=Escherichia coli, GI1787879, Length=155, Percent_Identity=31.6129032258064, Blast_Score=63, Evalue=3e-11,
Organism=Escherichia coli, GI157672245, Length=155, Percent_Identity=27.741935483871, Blast_Score=62, Evalue=6e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 33112; Mature: 33112

Theoretical pI: Translated: 7.28; Mature: 7.28

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
4.8 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
3.4 %Met     (Mature Protein)
4.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDRIQAMQMFMRVAEAGSFVRAAETLSLPASTVTSTIKNLEKYLKVRLLNRTTRRVSLTP
CCHHHHHHHHHHHHHHCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCEEECCH
EGMQYLAQCREILALIEHSESTLSESVARPQGRLRVDMPAGIAHFIVMPHLPDFYRRYPD
HHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCCEEEECCCCHHHHEECCCCCHHHHHCCC
IYLMIGVSDRQVDLIQEGVDCVIRTGELNNSSLVARPLGHFRWVTCASPDYLREYGVPPS
EEEEEECCCCHHHHHHHCCCEEEECCCCCCCCEEECCCCCEEEEEECCHHHHHHCCCCCC
PEALSQHRAVHYFSGQARRADEFRFVRHGETFSVPVSGNAAVNETGLYIKMCLAGFGLAQ
HHHHHHCCEEEEECCCCCCCHHHHHEECCCEEEEECCCCCCCCCCCHHHHHHHHHCCHHH
LAENIVADHLQEGRLVEVLTDWQPPPVPVTLLYPHQRFLSPAVRAFAEWMSEVV
HHHHHHHHHHCCCCEEEEEECCCCCCCCEEEECCCHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MDRIQAMQMFMRVAEAGSFVRAAETLSLPASTVTSTIKNLEKYLKVRLLNRTTRRVSLTP
CCHHHHHHHHHHHHHHCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCEEECCH
EGMQYLAQCREILALIEHSESTLSESVARPQGRLRVDMPAGIAHFIVMPHLPDFYRRYPD
HHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCCEEEECCCCHHHHEECCCCCHHHHHCCC
IYLMIGVSDRQVDLIQEGVDCVIRTGELNNSSLVARPLGHFRWVTCASPDYLREYGVPPS
EEEEEECCCCHHHHHHHCCCEEEECCCCCCCCEEECCCCCEEEEEECCHHHHHHCCCCCC
PEALSQHRAVHYFSGQARRADEFRFVRHGETFSVPVSGNAAVNETGLYIKMCLAGFGLAQ
HHHHHHCCEEEEECCCCCCCHHHHHEECCCEEEEECCCCCCCCCCCHHHHHHHHHCCHHH
LAENIVADHLQEGRLVEVLTDWQPPPVPVTLLYPHQRFLSPAVRAFAEWMSEVV
HHHHHHHHHHCCCCEEEEEECCCCCCCCEEEECCCHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8041620; 9278503 [H]