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The map label for this gene is rimM [H]

Identifier: 238896054

GI number: 238896054

Start: 4022160

End: 4022717

Strand: Reverse

Name: rimM [H]

Synonym: KP1_4186

Alternate gene names: 238896054

Gene position: 4022717-4022160 (Counterclockwise)

Preceding gene: 238896055

Following gene: 238896053

Centisome position: 76.64

GC content: 50.36

Gene sequence:

>558_bases
GTGGTCATGATGAGCAAGCAACACACCGCGCAAGCACCTGTTGATCCGATCGTATTGGGGAAAATGGGTTCTTCCTACGG
TATCCGTGGTTGGCTCAGAGTGTTTTCCTCCACCGAAGACGCCGAAAGCATTTTTGACTATCAGCCCTGGTTAATCCAGA
AGGCGGGTCAGTGGCAGGTCGTTGAGCTGGAAAGCTGGCGCCACCACAATCAGGACATCATCATCAAGCTGAAAGGCGTT
GACGATCGTGATGCCGCGAATCTACTGACTAATTGCGAAATTATCGTGGATTCATCGCAGTTGCCGGAGCTGGAAGAGGG
TGACTACTACTGGAAAGACCTGATGGGCTGCCAGGTAGTTACGACGGAAGGCTATAGCCTCGGTAAAGTCATCGATATGA
TGGAAACCGGGTCGAATGACGTGCTCGTCATCAAGGCAAACCTGAAAGATGCATTTGGTATCAAGGAGCGGTTGGTTCCG
TTCCTCGATGGGCAGGTTATCAAGAAAGTCGATCTCACTACGCGTACTATCGAAGTAGATTGGGATCCTGGTTTTTAA

Upstream 100 bases:

>100_bases
TCTGGATCGTATCGCTCACTGGGTTGGCCAGGGCGCTACTGTTTCCGATCGCGTTGCCGCGCTGATCAAAGCCGCTAACA
AAGCAGCTTAATCTGTCACG

Downstream 100 bases:

>100_bases
ATTCTCCGGATAAACGGTAAAAGACGGCGCTATGTGGATTGGCATAATTAGCCTGTTTCCTGAAATGTTCCGCGCAATTA
CCGATTACGGGGTAACTGGC

Product: 16S rRNA-processing protein RimM

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 185; Mature: 185

Protein sequence:

>185_residues
MVMMSKQHTAQAPVDPIVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWLIQKAGQWQVVELESWRHHNQDIIIKLKGV
DDRDAANLLTNCEIIVDSSQLPELEEGDYYWKDLMGCQVVTTEGYSLGKVIDMMETGSNDVLVIKANLKDAFGIKERLVP
FLDGQVIKKVDLTTRTIEVDWDPGF

Sequences:

>Translated_185_residues
MVMMSKQHTAQAPVDPIVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWLIQKAGQWQVVELESWRHHNQDIIIKLKGV
DDRDAANLLTNCEIIVDSSQLPELEEGDYYWKDLMGCQVVTTEGYSLGKVIDMMETGSNDVLVIKANLKDAFGIKERLVP
FLDGQVIKKVDLTTRTIEVDWDPGF
>Mature_185_residues
MVMMSKQHTAQAPVDPIVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWLIQKAGQWQVVELESWRHHNQDIIIKLKGV
DDRDAANLLTNCEIIVDSSQLPELEEGDYYWKDLMGCQVVTTEGYSLGKVIDMMETGSNDVLVIKANLKDAFGIKERLVP
FLDGQVIKKVDLTTRTIEVDWDPGF

Specific function: An accessory protein needed during the final step in the assembly of 30S ribosomal subunit, possibly for assembly of the head region. Probably interacts with S19. Essential for efficient processing of 16S rRNA. May be needed both before and after rbfA dur

COG id: COG0806

COG function: function code J; RimM protein, required for 16S rRNA processing

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 PRC barrel domain [H]

Homologues:

Organism=Escherichia coli, GI87082136, Length=182, Percent_Identity=93.956043956044, Blast_Score=358, Evalue=1e-101,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011961
- InterPro:   IPR007903
- InterPro:   IPR011033
- InterPro:   IPR002676
- InterPro:   IPR009000 [H]

Pfam domain/function: PF05239 PRC; PF01782 RimM [H]

EC number: NA

Molecular weight: Translated: 20954; Mature: 20954

Theoretical pI: Translated: 4.41; Mature: 4.41

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
3.8 %Met     (Translated Protein)
4.9 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
3.8 %Met     (Mature Protein)
4.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVMMSKQHTAQAPVDPIVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWLIQKAGQWQV
CEEECCCCCCCCCCCEEEEECCCCCCCHHHHHHHHCCCCCHHHHHCCCCCEEECCCCEEE
VELESWRHHNQDIIIKLKGVDDRDAANLLTNCEIIVDSSQLPELEEGDYYWKDLMGCQVV
EEECCCCCCCCEEEEEEECCCCCCHHHHHCCCEEEEECCCCCCCCCCCCHHHHHCCCEEE
TTEGYSLGKVIDMMETGSNDVLVIKANLKDAFGIKERLVPFLDGQVIKKVDLTTRTIEVD
EECCCCHHHHHHHHHCCCCCEEEEEECCCCHHCHHHHHHHHCCCCEEEEEECEEEEEEEE
WDPGF
CCCCC
>Mature Secondary Structure
MVMMSKQHTAQAPVDPIVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWLIQKAGQWQV
CEEECCCCCCCCCCCEEEEECCCCCCCHHHHHHHHCCCCCHHHHHCCCCCEEECCCCEEE
VELESWRHHNQDIIIKLKGVDDRDAANLLTNCEIIVDSSQLPELEEGDYYWKDLMGCQVV
EEECCCCCCCCEEEEEEECCCCCCHHHHHCCCEEEEECCCCCCCCCCCCHHHHHCCCEEE
TTEGYSLGKVIDMMETGSNDVLVIKANLKDAFGIKERLVPFLDGQVIKKVDLTTRTIEVD
EECCCCHHHHHHHHHCCCCCEEEEEECCCCHHCHHHHHHHHCCCCEEEEEECEEEEEEEE
WDPGF
CCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA