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The map label for this gene is nifU [H]

Identifier: 238895986

GI number: 238895986

Start: 3944104

End: 3944490

Strand: Reverse

Name: nifU [H]

Synonym: KP1_4113

Alternate gene names: 238895986

Gene position: 3944490-3944104 (Counterclockwise)

Preceding gene: 238895987

Following gene: 238895985

Centisome position: 75.15

GC content: 54.52

Gene sequence:

>387_bases
ATGGCTTACAGCGAAAAAGTTATCGATCATTACGAGAATCCGCGCAACGTCGGCTCTTTTGACAACAGCGACGAGAACGT
CGGCAGCGGCATGGTCGGCGCGCCGGCCTGCGGCGACGTGATGAAGCTGCAGATTAAAGTCAACAATGAAGGCATCATTG
AAGACGCGCGCTTCAAGACCTACGGCTGCGGTTCCGCTATCGCTTCCAGCTCCCTGGTTACCGAGTGGGTGAAGGGCAAA
TCGCTGGACGAAGCGCAGGCGATCAAGAACACCGATATCGCCGATGAACTGGAACTGCCGCCGGTGAAAATCCACTGCTC
GATCCTGGCGGAAGACGCGATTAAAGCCGCGATTGCGGATTACAAAAGCAAACGTGAAGCAAAATAA

Upstream 100 bases:

>100_bases
GCGAGCTTTCTCCGCTGTGGGAAATGTTCAAACAGGGCGTGGATCTGAACAGCATTGAATGGTCACATCACTAATTCGGC
ACCAATAAGGAGAATTCATC

Downstream 100 bases:

>100_bases
TTAGTTGAGGTTTTGTTATGTCGATTACTCTTAGCGACAGTGCAGCAGCGCGAGTCAATGCCTTCCTGGCGAACCGCGGT
AAAGGGTTTGGCCTGCGCCT

Product: scaffold protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 128; Mature: 127

Protein sequence:

>128_residues
MAYSEKVIDHYENPRNVGSFDNSDENVGSGMVGAPACGDVMKLQIKVNNEGIIEDARFKTYGCGSAIASSSLVTEWVKGK
SLDEAQAIKNTDIADELELPPVKIHCSILAEDAIKAAIADYKSKREAK

Sequences:

>Translated_128_residues
MAYSEKVIDHYENPRNVGSFDNSDENVGSGMVGAPACGDVMKLQIKVNNEGIIEDARFKTYGCGSAIASSSLVTEWVKGK
SLDEAQAIKNTDIADELELPPVKIHCSILAEDAIKAAIADYKSKREAK
>Mature_127_residues
AYSEKVIDHYENPRNVGSFDNSDENVGSGMVGAPACGDVMKLQIKVNNEGIIEDARFKTYGCGSAIASSSLVTEWVKGKS
LDEAQAIKNTDIADELELPPVKIHCSILAEDAIKAAIADYKSKREAK

Specific function: May be involved in the formation or repair of [Fe-S] clusters present in iron-sulfur proteins (Potential) [H]

COG id: COG0822

COG function: function code C; NifU homolog involved in Fe-S cluster formation

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the nifU family [H]

Homologues:

Organism=Homo sapiens, GI56699456, Length=126, Percent_Identity=75.3968253968254, Blast_Score=206, Evalue=3e-54,
Organism=Homo sapiens, GI24307953, Length=126, Percent_Identity=74.6031746031746, Blast_Score=202, Evalue=5e-53,
Organism=Escherichia coli, GI1788878, Length=128, Percent_Identity=97.65625, Blast_Score=257, Evalue=2e-70,
Organism=Caenorhabditis elegans, GI17543474, Length=126, Percent_Identity=68.2539682539683, Blast_Score=188, Evalue=6e-49,
Organism=Saccharomyces cerevisiae, GI6324800, Length=124, Percent_Identity=74.1935483870968, Blast_Score=192, Evalue=2e-50,
Organism=Saccharomyces cerevisiae, GI6325122, Length=124, Percent_Identity=71.7741935483871, Blast_Score=191, Evalue=4e-50,
Organism=Drosophila melanogaster, GI21355597, Length=126, Percent_Identity=74.6031746031746, Blast_Score=203, Evalue=2e-53,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011339
- InterPro:   IPR002871 [H]

Pfam domain/function: PF01592 NifU_N [H]

EC number: NA

Molecular weight: Translated: 13807; Mature: 13675

Theoretical pI: Translated: 4.65; Mature: 4.65

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.3 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
4.7 %Cys+Met (Translated Protein)
2.4 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAYSEKVIDHYENPRNVGSFDNSDENVGSGMVGAPACGDVMKLQIKVNNEGIIEDARFKT
CCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCEECCCCCC
YGCGSAIASSSLVTEWVKGKSLDEAQAIKNTDIADELELPPVKIHCSILAEDAIKAAIAD
CCCCHHHHHHHHHHHHHCCCCCCHHHHHCCCCCCCCCCCCCEEEEHHHHHHHHHHHHHHH
YKSKREAK
HHHHCCCC
>Mature Secondary Structure 
AYSEKVIDHYENPRNVGSFDNSDENVGSGMVGAPACGDVMKLQIKVNNEGIIEDARFKT
CCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCEECCCCCC
YGCGSAIASSSLVTEWVKGKSLDEAQAIKNTDIADELELPPVKIHCSILAEDAIKAAIAD
CCCCHHHHHHHHHHHHHCCCCCCHHHHHCCCCCCCCCCCCCEEEEHHHHHHHHHHHHHHH
YKSKREAK
HHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]