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The map label for this gene is rodZ [H]

Identifier: 238895971

GI number: 238895971

Start: 3925546

End: 3926541

Strand: Reverse

Name: rodZ [H]

Synonym: KP1_4096

Alternate gene names: 238895971

Gene position: 3926541-3925546 (Counterclockwise)

Preceding gene: 238895972

Following gene: 238895970

Centisome position: 74.81

GC content: 61.55

Gene sequence:

>996_bases
ATGAATACTGAAGCCACTCAAGATCATCAAGAAGCAAACACCACGGGCGCGCGTCTGCGTCACGCCCGCGAACAACTCGG
ACTTAGCCAGCAAGCGGTGGCCGAACGCTTATGCCTGAAGGTGTCCACGGTTCGTGATATTGAAGACGATAAGGCCCCCG
CCGACCTCGCCTCCACCTTCCTGCGCGGGTACATCCGCTCCTACGCTCGCCTCGTACATATTCCAGAAGACGAGCTGCTG
CCGATGATGGCCAAGCAGGCGCCCATCCGCGCGGCGAAAGTCGCGCCAATGCAGAGTTTCTCTTTAGGCAAGCGCCGCAA
AAAGCGCGACGGCTGGCTGATGAGCTTCACCTGGCTGGTGCTGTTTGTGGTTATCGGTCTGAGCGGCGCCTGGTGGTGGC
AAGACCATAAGGCGCAGCAGGAAGAGATTTCGACCATGGCCGATCAGTCTTCCGCTGAGCTGAACGGCGGCGACGCCAAC
AGCCAGAACGTGCCGCTGGATACCAGCGCCCCTGCAGCCCCGACCGCCGATAGCGCCGCGAACAGCGCGCCAACCGATAC
CGCCAGCGCACCGACCACCAGCGCGCCGGCCCAGACGCCAGCGGATAATAACGCTGTCGTGGCGCCTTCCCAGGCCAATG
TCGATACCGCGGGGACGACGCCGGCAGCTCCGGCTACCACTCCAGCCTCGCCGTTGCCGACCGATCAGGCGAACGTCACG
ACTCCGGCGGCGTCGGCGCAGGATCTGGTGATGAACTTTTCCGCCGACTGCTGGCTGGAAGTGAGCGATGCCACCGGTAA
AAAACTGTTCAGCGGCCTGCAGCGTAAAGGCGGTAACCTGAACCTGAGCGGTCAGGCGCCGTATAAGCTGAAAATTGGCG
CCCCGGCCGCGGTACAGATCCAGTATCTGGGCAAGCCTGTCGATTTAAGTCGTTTTATCAGAACTAACCAGGTTGCGCGT
CTGACCCTCAATGCCGAAGCATCACCGGCGCAGTAA

Upstream 100 bases:

>100_bases
GACAGTCCTATACTGTGAGGCTGACGTAGCACAGATGTCTCGCGGCGCCGGCTTTTTCCCGCGCTGAACTTTAAATTTCA
CGTACCAGTAGGTGTAGCGA

Downstream 100 bases:

>100_bases
CAGACGGGTAACGCGGGAGATTTTTCATGCATAACCAGGCTCCGATTCAACGTAGAAAATCTAAACGTATTTACGTTGGT
AATGTGCCAATTGGCGATGG

Product: cytoskeletal protein RodZ

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 331; Mature: 331

Protein sequence:

>331_residues
MNTEATQDHQEANTTGARLRHAREQLGLSQQAVAERLCLKVSTVRDIEDDKAPADLASTFLRGYIRSYARLVHIPEDELL
PMMAKQAPIRAAKVAPMQSFSLGKRRKKRDGWLMSFTWLVLFVVIGLSGAWWWQDHKAQQEEISTMADQSSAELNGGDAN
SQNVPLDTSAPAAPTADSAANSAPTDTASAPTTSAPAQTPADNNAVVAPSQANVDTAGTTPAAPATTPASPLPTDQANVT
TPAASAQDLVMNFSADCWLEVSDATGKKLFSGLQRKGGNLNLSGQAPYKLKIGAPAAVQIQYLGKPVDLSRFIRTNQVAR
LTLNAEASPAQ

Sequences:

>Translated_331_residues
MNTEATQDHQEANTTGARLRHAREQLGLSQQAVAERLCLKVSTVRDIEDDKAPADLASTFLRGYIRSYARLVHIPEDELL
PMMAKQAPIRAAKVAPMQSFSLGKRRKKRDGWLMSFTWLVLFVVIGLSGAWWWQDHKAQQEEISTMADQSSAELNGGDAN
SQNVPLDTSAPAAPTADSAANSAPTDTASAPTTSAPAQTPADNNAVVAPSQANVDTAGTTPAAPATTPASPLPTDQANVT
TPAASAQDLVMNFSADCWLEVSDATGKKLFSGLQRKGGNLNLSGQAPYKLKIGAPAAVQIQYLGKPVDLSRFIRTNQVAR
LTLNAEASPAQ
>Mature_331_residues
MNTEATQDHQEANTTGARLRHAREQLGLSQQAVAERLCLKVSTVRDIEDDKAPADLASTFLRGYIRSYARLVHIPEDELL
PMMAKQAPIRAAKVAPMQSFSLGKRRKKRDGWLMSFTWLVLFVVIGLSGAWWWQDHKAQQEEISTMADQSSAELNGGDAN
SQNVPLDTSAPAAPTADSAANSAPTDTASAPTTSAPAQTPADNNAVVAPSQANVDTAGTTPAAPATTPASPLPTDQANVT
TPAASAQDLVMNFSADCWLEVSDATGKKLFSGLQRKGGNLNLSGQAPYKLKIGAPAAVQIQYLGKPVDLSRFIRTNQVAR
LTLNAEASPAQ

Specific function: Cytoskeletal protein that is involved in cell-shape control through regulation of the length of the long axis [H]

COG id: COG1426

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cell inner membrane; Single-pass type II membrane protein. Note=Forms helical filaments along the long axis of the cell (By similarity) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH cro/C1-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1788864, Length=341, Percent_Identity=77.1260997067449, Blast_Score=493, Evalue=1e-140,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001387
- InterPro:   IPR010982 [H]

Pfam domain/function: PF01381 HTH_3 [H]

EC number: NA

Molecular weight: Translated: 35186; Mature: 35186

Theoretical pI: Translated: 6.53; Mature: 6.53

Prosite motif: PS50943 HTH_CROC1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNTEATQDHQEANTTGARLRHAREQLGLSQQAVAERLCLKVSTVRDIEDDKAPADLASTF
CCCCCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHH
LRGYIRSYARLVHIPEDELLPMMAKQAPIRAAKVAPMQSFSLGKRRKKRDGWLMSFTWLV
HHHHHHHHHHEEECCCHHHHHHHHHHCCCHHHHHCCCHHHHHHHHHHHHCCHHHHHHHHH
LFVVIGLSGAWWWQDHKAQQEEISTMADQSSAELNGGDANSQNVPLDTSAPAAPTADSAA
HHHHHHCCCCEEECCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
NSAPTDTASAPTTSAPAQTPADNNAVVAPSQANVDTAGTTPAAPATTPASPLPTDQANVT
CCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
TPAASAQDLVMNFSADCWLEVSDATGKKLFSGLQRKGGNLNLSGQAPYKLKIGAPAAVQI
CCCCCHHHHHHHCCCCEEEEECCCHHHHHHHHHHHCCCCEEECCCCCEEEEECCCCEEEE
QYLGKPVDLSRFIRTNQVARLTLNAEASPAQ
EECCCCCCHHHHHHCCCEEEEEECCCCCCCC
>Mature Secondary Structure
MNTEATQDHQEANTTGARLRHAREQLGLSQQAVAERLCLKVSTVRDIEDDKAPADLASTF
CCCCCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHH
LRGYIRSYARLVHIPEDELLPMMAKQAPIRAAKVAPMQSFSLGKRRKKRDGWLMSFTWLV
HHHHHHHHHHEEECCCHHHHHHHHHHCCCHHHHHCCCHHHHHHHHHHHHCCHHHHHHHHH
LFVVIGLSGAWWWQDHKAQQEEISTMADQSSAELNGGDANSQNVPLDTSAPAAPTADSAA
HHHHHHCCCCEEECCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
NSAPTDTASAPTTSAPAQTPADNNAVVAPSQANVDTAGTTPAAPATTPASPLPTDQANVT
CCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
TPAASAQDLVMNFSADCWLEVSDATGKKLFSGLQRKGGNLNLSGQAPYKLKIGAPAAVQI
CCCCCHHHHHHHCCCCEEEEECCCHHHHHHHHHHHCCCCEEECCCCCEEEEECCCCEEEE
QYLGKPVDLSRFIRTNQVARLTLNAEASPAQ
EECCCCCCHHHHHHCCCEEEEEECCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA