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The map label for this gene is yfdC [H]

Identifier: 238895859

GI number: 238895859

Start: 3803150

End: 3804079

Strand: Direct

Name: yfdC [H]

Synonym: KP1_3978

Alternate gene names: 238895859

Gene position: 3803150-3804079 (Clockwise)

Preceding gene: 238895857

Following gene: 238895860

Centisome position: 72.46

GC content: 54.73

Gene sequence:

>930_bases
ATGGATGAACTAGACAATAACAAATTAAAGGCAGAGGATGACGAAAGAGAAGTGGAAAGTGAGGAAAATCAGCGTGGTGA
AGAGATCGAAGTAAATGAAGATCGCCTTCCCTCGCGGGCGATGGCGATCCATGAACATATTCGCCAGGAAGGGGAAAAAG
AGATGGAGCGCGATGCGCTGGCCCTGCTATGGTCAGCGATTGCGGCCGGCCTGTCGATGGGGGCCTCCCTGCTGGCGAAG
GGAATTTTTCACGTCAAACTGGAGGGGATCCCGGGCGGTTTTTTGCTGGAAAACCTCGGCTACACCTTCGGCTTTATTAT
CGTAATTATGGCCCGCCAGCAGCTGTTCACTGAAAATACGGTCACCGCCGTTCTGCCAGTGATGCATAATCCCACCCTCG
GTAACGTCGGTTTGCTGATGCGGCTATGGTCGGTGGTGCTGGCGGGCAATCTCATCGGTACCGCGGTGGCCGCATGGGCC
TTCAATTATATGCCTATTTTTGATGAGCCAACCCGTCAGGCCTTTGTCAGCATCGCCGAAGACGTAATGAAAAACAGTCC
GACAGAGATGTTCGCCAATGCGATTATTTCCGGCTGGCTGGTCGCCACCATGGTCTGGATGTTTCCTGTCGCCGGCGCCG
CCAAAATCGTGGTGATTATTCTCATGACCTGGCTTATCGCCCTGGCGGATACCACCCATATTGTGGTGGGCTCGGTCGAG
ATCCTTTATCTGGTGTTTAATGGAAATCTGCCCTGGAGCGACTTTATCTGGCCGTTCGCCCTGCCGACCCTGGCGGGAAA
TATCTGTGGCGGGACCTTCATCTTCGCACTGCTGAGCCATGCGCAGATCCGTAACGATATGAGCAGCAAGCGAAAAGCGG
AAGCCCGCGCCCAGGCGGCGGAGAAAGGGAAAAAGGCCGACCGGGCATAA

Upstream 100 bases:

>100_bases
ATCTGACGTTACCATTTTTGCGATTTCAGAGTATGCCCAGCCAGACGGCAGGGAAAGCCGCTACGCTATAACTATACAGA
TTGATAGCGAGGGCCACGAA

Downstream 100 bases:

>100_bases
AAAAGCGCCCTGAGTGGCGAGGGTTTAAGCAGTCAGACGGTATGGCTCTTACTCAGGCGGGCAAAAAACGCTATACTCGT
GCCGCCTTGTCCCCTTAGTT

Product: putative transport protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 309; Mature: 309

Protein sequence:

>309_residues
MDELDNNKLKAEDDEREVESEENQRGEEIEVNEDRLPSRAMAIHEHIRQEGEKEMERDALALLWSAIAAGLSMGASLLAK
GIFHVKLEGIPGGFLLENLGYTFGFIIVIMARQQLFTENTVTAVLPVMHNPTLGNVGLLMRLWSVVLAGNLIGTAVAAWA
FNYMPIFDEPTRQAFVSIAEDVMKNSPTEMFANAIISGWLVATMVWMFPVAGAAKIVVIILMTWLIALADTTHIVVGSVE
ILYLVFNGNLPWSDFIWPFALPTLAGNICGGTFIFALLSHAQIRNDMSSKRKAEARAQAAEKGKKADRA

Sequences:

>Translated_309_residues
MDELDNNKLKAEDDEREVESEENQRGEEIEVNEDRLPSRAMAIHEHIRQEGEKEMERDALALLWSAIAAGLSMGASLLAK
GIFHVKLEGIPGGFLLENLGYTFGFIIVIMARQQLFTENTVTAVLPVMHNPTLGNVGLLMRLWSVVLAGNLIGTAVAAWA
FNYMPIFDEPTRQAFVSIAEDVMKNSPTEMFANAIISGWLVATMVWMFPVAGAAKIVVIILMTWLIALADTTHIVVGSVE
ILYLVFNGNLPWSDFIWPFALPTLAGNICGGTFIFALLSHAQIRNDMSSKRKAEARAQAAEKGKKADRA
>Mature_309_residues
MDELDNNKLKAEDDEREVESEENQRGEEIEVNEDRLPSRAMAIHEHIRQEGEKEMERDALALLWSAIAAGLSMGASLLAK
GIFHVKLEGIPGGFLLENLGYTFGFIIVIMARQQLFTENTVTAVLPVMHNPTLGNVGLLMRLWSVVLAGNLIGTAVAAWA
FNYMPIFDEPTRQAFVSIAEDVMKNSPTEMFANAIISGWLVATMVWMFPVAGAAKIVVIILMTWLIALADTTHIVVGSVE
ILYLVFNGNLPWSDFIWPFALPTLAGNICGGTFIFALLSHAQIRNDMSSKRKAEARAQAAEKGKKADRA

Specific function: Unknown

COG id: COG2116

COG function: function code P; Formate/nitrite family of transporters

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1788689, Length=304, Percent_Identity=82.2368421052632, Blast_Score=500, Evalue=1e-143,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000292 [H]

Pfam domain/function: PF01226 Form_Nir_trans [H]

EC number: NA

Molecular weight: Translated: 34045; Mature: 34045

Theoretical pI: Translated: 4.75; Mature: 4.75

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
4.5 %Met     (Translated Protein)
4.9 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
4.5 %Met     (Mature Protein)
4.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDELDNNKLKAEDDEREVESEENQRGEEIEVNEDRLPSRAMAIHEHIRQEGEKEMERDAL
CCCCCCCCCCCCCHHHHHHHHHHCCCCEECCCHHCCCHHHHHHHHHHHHHHHHHHHHHHH
ALLWSAIAAGLSMGASLLAKGIFHVKLEGIPGGFLLENLGYTFGFIIVIMARQQLFTENT
HHHHHHHHHHHHHHHHHHHCCHHEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCH
VTAVLPVMHNPTLGNVGLLMRLWSVVLAGNLIGTAVAAWAFNYMPIFDEPTRQAFVSIAE
HHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHH
DVMKNSPTEMFANAIISGWLVATMVWMFPVAGAAKIVVIILMTWLIALADTTHIVVGSVE
HHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCEEEECEE
ILYLVFNGNLPWSDFIWPFALPTLAGNICGGTFIFALLSHAQIRNDMSSKRKAEARAQAA
EEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
EKGKKADRA
HHCCCCCCC
>Mature Secondary Structure
MDELDNNKLKAEDDEREVESEENQRGEEIEVNEDRLPSRAMAIHEHIRQEGEKEMERDAL
CCCCCCCCCCCCCHHHHHHHHHHCCCCEECCCHHCCCHHHHHHHHHHHHHHHHHHHHHHH
ALLWSAIAAGLSMGASLLAKGIFHVKLEGIPGGFLLENLGYTFGFIIVIMARQQLFTENT
HHHHHHHHHHHHHHHHHHHCCHHEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCH
VTAVLPVMHNPTLGNVGLLMRLWSVVLAGNLIGTAVAAWAFNYMPIFDEPTRQAFVSIAE
HHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHH
DVMKNSPTEMFANAIISGWLVATMVWMFPVAGAAKIVVIILMTWLIALADTTHIVVGSVE
HHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCEEEECEE
ILYLVFNGNLPWSDFIWPFALPTLAGNICGGTFIFALLSHAQIRNDMSSKRKAEARAQAA
EEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
EKGKKADRA
HHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9205837; 9278503 [H]