Click here to switch to the map view.

The map label for this gene is rcsB [H]

Identifier: 238895765

GI number: 238895765

Start: 3703310

End: 3703960

Strand: Direct

Name: rcsB [H]

Synonym: KP1_3872

Alternate gene names: 238895765

Gene position: 3703310-3703960 (Clockwise)

Preceding gene: 238895764

Following gene: 238895768

Centisome position: 70.56

GC content: 53.3

Gene sequence:

>651_bases
ATGAACACTATGAACGTAATTATTGCCGATGACCATCCGATCGTACTGTTCGGTATTCGTAAGTCACTTGAGCAAATTGA
GTGGGTGAACGTCGTTGGCGAGTTTGAAGACTCCACGGCCCTTATCAACAATCTTCCGAAGCTGGACGCCCATGTGCTGA
TCACCGATCTGTCCATGCCCGGTGACAAATACGGCGACGGGATCACGCTGATTAAATACATCAAGCGCCACTTCCCGGAT
CTGTCGATCATTGTTCTGACCATGAACAACAATCCGGCGATCCTCAGCGCGGTGCTGGATCTGGATATCGAAGGGATCGT
CCTCAAGCAGGGGGCGCCGACCGACCTGCCAAAAGCGCTGGCCGCGCTGCAGAAAGGGAAGAAATTCACCCCGGAAAGCG
TCTCTCGCCTGCTGGAAAAAATCAGCGCCAGCGGCTATGGCGATAAACGCCTGTCGCCGAAAGAGAGCGAAGTACTGCGC
CTGTTCGCCGAAGGTTTCCTGGTAACCGAGATCGCCAAAAAGCTTAATCGCAGCATTAAAACCATCAGCAGCCAGAAGAA
ATCGGCGATGATGAAGCTGGGCGTCGAAAACGACATCGCCTTGCTGAACTACCTCTCTTCCGTCTCGCTGAGCGCGACGG
ACAAAGAGTAA

Upstream 100 bases:

>100_bases
TGAGCATCTGATTCGCGAAAAGGATGCGCAAGGCATAGAAAAATATATCAGCGACATTGACGCTTACGTCAAGAGCTTGC
TGTAGAAGGTAGCCTTATAC

Downstream 100 bases:

>100_bases
TCTCTTCGCCCTCTCCGTCTCGCCCCGGCGAGACGGAGCTCCCCATTATTCCCGCCCTTTACGCACCCGCGCCGCATATA
CCGTCAGCGTTTGCTTCAGT

Product: transcriptional regulator RcsB

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 216; Mature: 216

Protein sequence:

>216_residues
MNTMNVIIADDHPIVLFGIRKSLEQIEWVNVVGEFEDSTALINNLPKLDAHVLITDLSMPGDKYGDGITLIKYIKRHFPD
LSIIVLTMNNNPAILSAVLDLDIEGIVLKQGAPTDLPKALAALQKGKKFTPESVSRLLEKISASGYGDKRLSPKESEVLR
LFAEGFLVTEIAKKLNRSIKTISSQKKSAMMKLGVENDIALLNYLSSVSLSATDKE

Sequences:

>Translated_216_residues
MNTMNVIIADDHPIVLFGIRKSLEQIEWVNVVGEFEDSTALINNLPKLDAHVLITDLSMPGDKYGDGITLIKYIKRHFPD
LSIIVLTMNNNPAILSAVLDLDIEGIVLKQGAPTDLPKALAALQKGKKFTPESVSRLLEKISASGYGDKRLSPKESEVLR
LFAEGFLVTEIAKKLNRSIKTISSQKKSAMMKLGVENDIALLNYLSSVSLSATDKE
>Mature_216_residues
MNTMNVIIADDHPIVLFGIRKSLEQIEWVNVVGEFEDSTALINNLPKLDAHVLITDLSMPGDKYGDGITLIKYIKRHFPD
LSIIVLTMNNNPAILSAVLDLDIEGIVLKQGAPTDLPKALAALQKGKKFTPESVSRLLEKISASGYGDKRLSPKESEVLR
LFAEGFLVTEIAKKLNRSIKTISSQKKSAMMKLGVENDIALLNYLSSVSLSATDKE

Specific function: Also stimulates ftsZ expression. This suggests that rcsB is a regulator implicated in the regulation of more than one cellular function [H]

COG id: COG2197

COG function: function code TK; Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 response regulatory domain [H]

Homologues:

Organism=Escherichia coli, GI1788546, Length=216, Percent_Identity=96.7592592592593, Blast_Score=419, Evalue=1e-119,
Organism=Escherichia coli, GI1788222, Length=207, Percent_Identity=27.536231884058, Blast_Score=82, Evalue=3e-17,
Organism=Escherichia coli, GI1790102, Length=199, Percent_Identity=30.6532663316583, Blast_Score=79, Evalue=2e-16,
Organism=Escherichia coli, GI1788521, Length=200, Percent_Identity=30, Blast_Score=77, Evalue=6e-16,
Organism=Escherichia coli, GI1786747, Length=206, Percent_Identity=27.1844660194175, Blast_Score=69, Evalue=2e-13,
Organism=Escherichia coli, GI1788712, Length=190, Percent_Identity=25.7894736842105, Blast_Score=66, Evalue=1e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011006
- InterPro:   IPR016032
- InterPro:   IPR001789
- InterPro:   IPR000792
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00196 GerE; PF00072 Response_reg [H]

EC number: NA

Molecular weight: Translated: 23720; Mature: 23720

Theoretical pI: Translated: 6.82; Mature: 6.82

Prosite motif: PS50110 RESPONSE_REGULATORY ; PS00622 HTH_LUXR_1 ; PS50043 HTH_LUXR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNTMNVIIADDHPIVLFGIRKSLEQIEWVNVVGEFEDSTALINNLPKLDAHVLITDLSMP
CCCEEEEEECCCCEEEEHHHHHHHHHHHHHHHHCCCCHHHHHHCCCCCCEEEEEEECCCC
GDKYGDGITLIKYIKRHFPDLSIIVLTMNNNPAILSAVLDLDIEGIVLKQGAPTDLPKAL
CCCCCCCHHHHHHHHHHCCCEEEEEEEECCCCCEEHHHHHCCCCEEEEECCCCCCHHHHH
AALQKGKKFTPESVSRLLEKISASGYGDKRLSPKESEVLRLFAEGFLVTEIAKKLNRSIK
HHHHCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
TISSQKKSAMMKLGVENDIALLNYLSSVSLSATDKE
HHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCCC
>Mature Secondary Structure
MNTMNVIIADDHPIVLFGIRKSLEQIEWVNVVGEFEDSTALINNLPKLDAHVLITDLSMP
CCCEEEEEECCCCEEEEHHHHHHHHHHHHHHHHCCCCHHHHHHCCCCCCEEEEEEECCCC
GDKYGDGITLIKYIKRHFPDLSIIVLTMNNNPAILSAVLDLDIEGIVLKQGAPTDLPKAL
CCCCCCCHHHHHHHHHHCCCEEEEEEEECCCCCEEHHHHHCCCCEEEEECCCCCCHHHHH
AALQKGKKFTPESVSRLLEKISASGYGDKRLSPKESEVLRLFAEGFLVTEIAKKLNRSIK
HHHHCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
TISSQKKSAMMKLGVENDIALLNYLSSVSLSATDKE
HHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]