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The map label for this gene is ltrA [H]

Identifier: 238895580

GI number: 238895580

Start: 3482930

End: 3483919

Strand: Reverse

Name: ltrA [H]

Synonym: KP1_3663

Alternate gene names: 238895580

Gene position: 3483919-3482930 (Counterclockwise)

Preceding gene: 238895582

Following gene: 238895577

Centisome position: 66.38

GC content: 64.44

Gene sequence:

>990_bases
TTGAATACATTGTTTTTACTGGTGAACAATCACATGAGCGAGAGTCGTCCGGAGAGTTACTGGCCCCATCTGTACTGGCT
GACGGTGCTGGAAGAACAAAAAAGCTATACCCGGGCCGCGGAAAAGCTGGGGATCAGCAAGTCGGCTATCAGCCAGAAAA
TCAGCGAGCTGGAGCGGGTGACCGGTAAAACCCTCGTCCATCGCACCACCCGCAGCGTGAGCCTCAGCGACGACGGACTG
CGGCTGGTGGCGGAGCTCAACGAGCCGTTTGGTCAGCTGCGGGATATTTTCACCGGCGCCTGCGATGAGGGCGGGCCGCT
GCGGGGAACGCTGCGCCTGACCGCGCCGGTGGCCTTTTCCCGCCAGCAGCTGGTCCCGGCAATCGCGCCTTTTTTGCATC
AGCATCCCCAGCTGCATCTGCAGCTTGAGGTCACCGACCGGCTGGTCTCTCTGGCCAGCGAAGGGTTCGATCTCGCCATC
CGCCACTGTCGACGCGAGGCGCTCCCCGATACCCACGTCGCCTGGCCGCTGTGTCACACCGCGACGCTTACCGTCGCGTC
CGCCGACTATATTCGCCGCCATGGCCGCCCGGAGACCCCCGAAGATCTGCGCCACCACCAGTGCCTGACCTATCCCCGTG
GGCCACAGCGCCCGCAGTGGACGTTCGCCTCCCGTCAGTCGCCCGATGCTCGGGTGACCATCAACGTGCAGGGGCCATTC
GCCACCAATAACAGCGAGTCGCTACGTGATGCGGTACTGGCGGGGCTTGGGGTGGCGCTGTTGCCGGATTTCAGCGCCCG
GGAGGCCATTGGCCGCGGGCTGGTGCAGGAGCTGCTGCCGGCGTGGCAGCCGGTGGAGGTGTTTGCCGACCGGCTATACG
TCATTCGGCCCTATACTCCGCGCGTGTCGCGCGCGGTGGAAACCTTCAGCCGCTACCTGAAAGCGACCTTCAGCGAGCCG
CGTCCAGCTCCTGCGCCAGCGTCTCGCTAA

Upstream 100 bases:

>100_bases
AAATGTCAGTAATGGCATGCAGGTGCTCCTTATCGTTAGGGAATAATGATGGGCTCAACAAGATGCTAGCCGATGCCGCC
GCCGGCAAAAACCGCTATAG

Downstream 100 bases:

>100_bases
AGCGGGGCAGCAGATGGCGCTCGCCGGGAAGCAGCTGCGCGAGAGTAACGGTCTTGTCAGCGCAATAGACCCGCTCGCTG
CCGAGCTGCGCTTCGAAGGC

Product: putative LysR-family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 329; Mature: 329

Protein sequence:

>329_residues
MNTLFLLVNNHMSESRPESYWPHLYWLTVLEEQKSYTRAAEKLGISKSAISQKISELERVTGKTLVHRTTRSVSLSDDGL
RLVAELNEPFGQLRDIFTGACDEGGPLRGTLRLTAPVAFSRQQLVPAIAPFLHQHPQLHLQLEVTDRLVSLASEGFDLAI
RHCRREALPDTHVAWPLCHTATLTVASADYIRRHGRPETPEDLRHHQCLTYPRGPQRPQWTFASRQSPDARVTINVQGPF
ATNNSESLRDAVLAGLGVALLPDFSAREAIGRGLVQELLPAWQPVEVFADRLYVIRPYTPRVSRAVETFSRYLKATFSEP
RPAPAPASR

Sequences:

>Translated_329_residues
MNTLFLLVNNHMSESRPESYWPHLYWLTVLEEQKSYTRAAEKLGISKSAISQKISELERVTGKTLVHRTTRSVSLSDDGL
RLVAELNEPFGQLRDIFTGACDEGGPLRGTLRLTAPVAFSRQQLVPAIAPFLHQHPQLHLQLEVTDRLVSLASEGFDLAI
RHCRREALPDTHVAWPLCHTATLTVASADYIRRHGRPETPEDLRHHQCLTYPRGPQRPQWTFASRQSPDARVTINVQGPF
ATNNSESLRDAVLAGLGVALLPDFSAREAIGRGLVQELLPAWQPVEVFADRLYVIRPYTPRVSRAVETFSRYLKATFSEP
RPAPAPASR
>Mature_329_residues
MNTLFLLVNNHMSESRPESYWPHLYWLTVLEEQKSYTRAAEKLGISKSAISQKISELERVTGKTLVHRTTRSVSLSDDGL
RLVAELNEPFGQLRDIFTGACDEGGPLRGTLRLTAPVAFSRQQLVPAIAPFLHQHPQLHLQLEVTDRLVSLASEGFDLAI
RHCRREALPDTHVAWPLCHTATLTVASADYIRRHGRPETPEDLRHHQCLTYPRGPQRPQWTFASRQSPDARVTINVQGPF
ATNNSESLRDAVLAGLGVALLPDFSAREAIGRGLVQELLPAWQPVEVFADRLYVIRPYTPRVSRAVETFSRYLKATFSEP
RPAPAPASR

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1786401, Length=286, Percent_Identity=30.7692307692308, Blast_Score=130, Evalue=1e-31,
Organism=Escherichia coli, GI145693193, Length=290, Percent_Identity=30, Blast_Score=122, Evalue=3e-29,
Organism=Escherichia coli, GI87081978, Length=293, Percent_Identity=32.4232081911263, Blast_Score=117, Evalue=1e-27,
Organism=Escherichia coli, GI1787128, Length=259, Percent_Identity=30.1158301158301, Blast_Score=106, Evalue=2e-24,
Organism=Escherichia coli, GI1789440, Length=274, Percent_Identity=25.1824817518248, Blast_Score=102, Evalue=4e-23,
Organism=Escherichia coli, GI1787589, Length=263, Percent_Identity=28.5171102661597, Blast_Score=90, Evalue=2e-19,
Organism=Escherichia coli, GI1789639, Length=286, Percent_Identity=28.3216783216783, Blast_Score=87, Evalue=1e-18,
Organism=Escherichia coli, GI1789173, Length=267, Percent_Identity=26.5917602996255, Blast_Score=75, Evalue=6e-15,
Organism=Escherichia coli, GI1786448, Length=281, Percent_Identity=25.9786476868327, Blast_Score=69, Evalue=3e-13,
Organism=Escherichia coli, GI1788706, Length=177, Percent_Identity=30.5084745762712, Blast_Score=65, Evalue=5e-12,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 36932; Mature: 36932

Theoretical pI: Translated: 8.89; Mature: 8.89

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
0.6 %Met     (Translated Protein)
1.8 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
0.6 %Met     (Mature Protein)
1.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNTLFLLVNNHMSESRPESYWPHLYWLTVLEEQKSYTRAAEKLGISKSAISQKISELERV
CCEEEEEEECCCCCCCCCHHCCEEEEHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
TGKTLVHRTTRSVSLSDDGLRLVAELNEPFGQLRDIFTGACDEGGPLRGTLRLTAPVAFS
HHHHHHHHHCCEEEECCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEECCHHHH
RQQLVPAIAPFLHQHPQLHLQLEVTDRLVSLASEGFDLAIRHCRREALPDTHVAWPLCHT
HHHHHHHHHHHHHCCCCEEEEEEHHHHHHHHHHCCHHHHHHHHHHHCCCCCCCCCHHHHH
ATLTVASADYIRRHGRPETPEDLRHHQCLTYPRGPQRPQWTFASRQSPDARVTINVQGPF
HEEEHHHHHHHHHCCCCCCHHHHHHCCEECCCCCCCCCCEEECCCCCCCCEEEEEEECCC
ATNNSESLRDAVLAGLGVALLPDFSAREAIGRGLVQELLPAWQPVEVFADRLYVIRPYTP
CCCCHHHHHHHHHHHCCHHHCCCCHHHHHHHHHHHHHHHCCCCCHHHHHCCEEEECCCCH
RVSRAVETFSRYLKATFSEPRPAPAPASR
HHHHHHHHHHHHHHHHCCCCCCCCCCCCC
>Mature Secondary Structure
MNTLFLLVNNHMSESRPESYWPHLYWLTVLEEQKSYTRAAEKLGISKSAISQKISELERV
CCEEEEEEECCCCCCCCCHHCCEEEEHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
TGKTLVHRTTRSVSLSDDGLRLVAELNEPFGQLRDIFTGACDEGGPLRGTLRLTAPVAFS
HHHHHHHHHCCEEEECCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEECCHHHH
RQQLVPAIAPFLHQHPQLHLQLEVTDRLVSLASEGFDLAIRHCRREALPDTHVAWPLCHT
HHHHHHHHHHHHHCCCCEEEEEEHHHHHHHHHHCCHHHHHHHHHHHCCCCCCCCCHHHHH
ATLTVASADYIRRHGRPETPEDLRHHQCLTYPRGPQRPQWTFASRQSPDARVTINVQGPF
HEEEHHHHHHHHHCCCCCCHHHHHHCCEECCCCCCCCCCEEECCCCCCCCEEEEEEECCC
ATNNSESLRDAVLAGLGVALLPDFSAREAIGRGLVQELLPAWQPVEVFADRLYVIRPYTP
CCCCHHHHHHHHHHHCCHHHCCCCHHHHHHHHHHHHHHHCCCCCHHHHHCCEEEECCCCH
RVSRAVETFSRYLKATFSEPRPAPAPASR
HHHHHHHHHHHHHHHHCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8748036 [H]