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The map label for this gene is cph2 [H]

Identifier: 238895569

GI number: 238895569

Start: 3473408

End: 3474379

Strand: Reverse

Name: cph2 [H]

Synonym: KP1_3652

Alternate gene names: 238895569

Gene position: 3474379-3473408 (Counterclockwise)

Preceding gene: 238895570

Following gene: 238895567

Centisome position: 66.2

GC content: 59.57

Gene sequence:

>972_bases
ATGAAATTAGCCGGACTTCATCCCGACGAGCAGCGTCGCCTGCAATCGCTACGCTCTTCCGGGCTGTTGAATAGCGGAAA
AGAAGAACGCTTCGATCGCCTGACCAGGCTTGCCCGTTCGCTGTATAACCTGCCGGTGGCGTCCATCAGTCTGGTGGGGG
AAGATCTCCTGCATATCAAGTCCTGTGCCGGTCTCGATGTGGACACGGTGCCGAGAGATATTTCATTTTGCGCCCATACC
ATTCTGCAAACCGACCCGCTTATCGTCAACGACATGCAGCAGGACGAGCGCTTTCACGATAACCCGCTGGTCATTGAGGC
GCCGTTTATCCGCTTTTACGCCGGGTATCCGGTGCAACTGCCGGATGGCGCGACCGTCGGGTCGTTCTGCCTGATGGATC
ACCAGCCGCGATCGTTTTCCGCCCATGAAATGCAGATCTTAAGCGATCTGGCGGCGATCGTGGAGGATGAGTTCAAGGTG
CTGGATGCGGCAACCTCGGATGAGCTGACGGGACTGTTTAATCGCCGGGGATTCCTCACCCTGGCAGAGTATGCCCTGCT
GACGGCCCAGCGCCGCCATGAGCCGGTGAGTCTGGCGTTTGTCGACCTCGATCGCTTCAAGCACATCAATGATACCTGGG
GGCATGAAGAGGGCGATCGCGCGCTGATCGCCATCGCCGACTTGATGAAAGCGGCCTTCCGCGAGTCCGATATCCTCGCG
AGGCAGGGTGGGGACGAATTTATCATTCTGTTCGCCAATACCAGCCGCCACGATGCCGCGACGGCGATGGAGACGCTCAG
CCACAACGTGGCGCGTTTCAACCAGCAGGCGGCCAATCCCTGGCAGCTGGCGTTCTCCTGGGGCTGCGTCGAATATGATC
CCGCCAGCCATCCCAGTCTCAACGCGCTGGTGGCCACCGCTGACCGCCTGATGTACCAGGCGAAGCAGAAGCAGGGACGC
GAGCGCCGTTAA

Upstream 100 bases:

>100_bases
TCATGGGGTACCTGACGACTATTTTCCCCTCGCAGGATAAAACGCCGGGTTTCTCTGCGGAAACCCGGCGGAATTCTGCG
CAAGAGACAAGTGAGAGACA

Downstream 100 bases:

>100_bases
TCCTTTGCGGCGGTGGCATTCAACAGATACTGCTGCGCCTGCTGCCGCTTCTGCGCATAGCTGCTGAGCAGCGCCTGCTG
CGATTTCCCTTCGTTATCGT

Product: hypothetical protein

Products: NA

Alternate protein names: Bacteriophytochrome cph2 [H]

Number of amino acids: Translated: 323; Mature: 323

Protein sequence:

>323_residues
MKLAGLHPDEQRRLQSLRSSGLLNSGKEERFDRLTRLARSLYNLPVASISLVGEDLLHIKSCAGLDVDTVPRDISFCAHT
ILQTDPLIVNDMQQDERFHDNPLVIEAPFIRFYAGYPVQLPDGATVGSFCLMDHQPRSFSAHEMQILSDLAAIVEDEFKV
LDAATSDELTGLFNRRGFLTLAEYALLTAQRRHEPVSLAFVDLDRFKHINDTWGHEEGDRALIAIADLMKAAFRESDILA
RQGGDEFIILFANTSRHDAATAMETLSHNVARFNQQAANPWQLAFSWGCVEYDPASHPSLNALVATADRLMYQAKQKQGR
ERR

Sequences:

>Translated_323_residues
MKLAGLHPDEQRRLQSLRSSGLLNSGKEERFDRLTRLARSLYNLPVASISLVGEDLLHIKSCAGLDVDTVPRDISFCAHT
ILQTDPLIVNDMQQDERFHDNPLVIEAPFIRFYAGYPVQLPDGATVGSFCLMDHQPRSFSAHEMQILSDLAAIVEDEFKV
LDAATSDELTGLFNRRGFLTLAEYALLTAQRRHEPVSLAFVDLDRFKHINDTWGHEEGDRALIAIADLMKAAFRESDILA
RQGGDEFIILFANTSRHDAATAMETLSHNVARFNQQAANPWQLAFSWGCVEYDPASHPSLNALVATADRLMYQAKQKQGR
ERR
>Mature_323_residues
MKLAGLHPDEQRRLQSLRSSGLLNSGKEERFDRLTRLARSLYNLPVASISLVGEDLLHIKSCAGLDVDTVPRDISFCAHT
ILQTDPLIVNDMQQDERFHDNPLVIEAPFIRFYAGYPVQLPDGATVGSFCLMDHQPRSFSAHEMQILSDLAAIVEDEFKV
LDAATSDELTGLFNRRGFLTLAEYALLTAQRRHEPVSLAFVDLDRFKHINDTWGHEEGDRALIAIADLMKAAFRESDILA
RQGGDEFIILFANTSRHDAATAMETLSHNVARFNQQAANPWQLAFSWGCVEYDPASHPSLNALVATADRLMYQAKQKQGR
ERR

Specific function: Photoreceptor which exists in two forms that are reversibly interconvertible by light:the R form that absorbs maximally in the red region of the spectrum and the FR form that absorbs maximally in the far-red region [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 GGDEF domains [H]

Homologues:

Organism=Escherichia coli, GI87081977, Length=226, Percent_Identity=27.8761061946903, Blast_Score=99, Evalue=3e-22,
Organism=Escherichia coli, GI145693134, Length=156, Percent_Identity=35.8974358974359, Blast_Score=97, Evalue=1e-21,
Organism=Escherichia coli, GI1786584, Length=188, Percent_Identity=31.9148936170213, Blast_Score=93, Evalue=2e-20,
Organism=Escherichia coli, GI1787262, Length=233, Percent_Identity=28.3261802575107, Blast_Score=92, Evalue=3e-20,
Organism=Escherichia coli, GI87081881, Length=177, Percent_Identity=32.2033898305085, Blast_Score=88, Evalue=6e-19,
Organism=Escherichia coli, GI1788085, Length=161, Percent_Identity=30.4347826086957, Blast_Score=80, Evalue=2e-16,
Organism=Escherichia coli, GI87081974, Length=214, Percent_Identity=28.9719626168224, Blast_Score=78, Evalue=9e-16,
Organism=Escherichia coli, GI1788381, Length=147, Percent_Identity=34.6938775510204, Blast_Score=77, Evalue=1e-15,
Organism=Escherichia coli, GI87082007, Length=161, Percent_Identity=33.5403726708075, Blast_Score=76, Evalue=3e-15,
Organism=Escherichia coli, GI1787541, Length=163, Percent_Identity=30.0613496932515, Blast_Score=70, Evalue=1e-13,
Organism=Escherichia coli, GI1787816, Length=200, Percent_Identity=29.5, Blast_Score=67, Evalue=1e-12,
Organism=Escherichia coli, GI1788956, Length=163, Percent_Identity=30.0613496932515, Blast_Score=64, Evalue=1e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001633
- InterPro:   IPR003018
- InterPro:   IPR016132
- InterPro:   IPR001294
- InterPro:   IPR013515 [H]

Pfam domain/function: PF00563 EAL; PF01590 GAF; PF00990 GGDEF; PF00360 Phytochrome [H]

EC number: NA

Molecular weight: Translated: 36291; Mature: 36291

Theoretical pI: Translated: 5.55; Mature: 5.55

Prosite motif: PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKLAGLHPDEQRRLQSLRSSGLLNSGKEERFDRLTRLARSLYNLPVASISLVGEDLLHIK
CCCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH
SCAGLDVDTVPRDISFCAHTILQTDPLIVNDMQQDERFHDNPLVIEAPFIRFYAGYPVQL
HHCCCCCCCCCHHHHHHHHHHHCCCCCEECCCHHHHHHCCCCEEEECCHHHHCCCCCEEC
PDGATVGSFCLMDHQPRSFSAHEMQILSDLAAIVEDEFKVLDAATSDELTGLFNRRGFLT
CCCCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHH
LAEYALLTAQRRHEPVSLAFVDLDRFKHINDTWGHEEGDRALIAIADLMKAAFRESDILA
HHHHHHHHHHHCCCCEEEEEEEHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
RQGGDEFIILFANTSRHDAATAMETLSHNVARFNQQAANPWQLAFSWGCVEYDPASHPSL
HCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCEECCCCCCCCH
NALVATADRLMYQAKQKQGRERR
HHHHHHHHHHHHHHHHHCCCCCC
>Mature Secondary Structure
MKLAGLHPDEQRRLQSLRSSGLLNSGKEERFDRLTRLARSLYNLPVASISLVGEDLLHIK
CCCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH
SCAGLDVDTVPRDISFCAHTILQTDPLIVNDMQQDERFHDNPLVIEAPFIRFYAGYPVQL
HHCCCCCCCCCHHHHHHHHHHHCCCCCEECCCHHHHHHCCCCEEEECCHHHHCCCCCEEC
PDGATVGSFCLMDHQPRSFSAHEMQILSDLAAIVEDEFKVLDAATSDELTGLFNRRGFLT
CCCCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHH
LAEYALLTAQRRHEPVSLAFVDLDRFKHINDTWGHEEGDRALIAIADLMKAAFRESDILA
HHHHHHHHHHHCCCCEEEEEEEHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
RQGGDEFIILFANTSRHDAATAMETLSHNVARFNQQAANPWQLAFSWGCVEYDPASHPSL
HCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCEECCCCCCCCH
NALVATADRLMYQAKQKQGRERR
HHHHHHHHHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8590279; 8905231; 10978170; 11063585 [H]