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The map label for this gene is virB1 [H]

Identifier: 238895544

GI number: 238895544

Start: 3449225

End: 3449935

Strand: Direct

Name: virB1 [H]

Synonym: KP1_3626

Alternate gene names: 238895544

Gene position: 3449225-3449935 (Clockwise)

Preceding gene: 238895543

Following gene: 238895545

Centisome position: 65.72

GC content: 57.24

Gene sequence:

>711_bases
ATGCTTTCCACCACAGCCTTTCTGGCGATAGCCATGCAGTGCGCCGCCAGCATTCATCCGTCCACGGCATTCGACGTGGC
ACGGGTGGAATCCGGTTTTAACCCTTATGCCATCGCTGAGATTGTCCCGAAGGCCGGCCCCTCTTTCGGCGATCAACACA
TTATTTCTCACCTGCCAGCCAGCCGGGGAGATGCAGAGCAGATTCTCCGTCGCCTGACAGCACAGGATCGCCGTTACTCT
GTCGGGCTGATGCAAATCACCAGCACCAATTTCCGCCATTATGGTGTGTCCGCCACAGAGCTACTTGATCCCTGTACCAA
TCTGTCCGTCTTCGAACACATTCTCAGAGACTGCTACCGGCGCGGCGGCACGCTGAAAAGGGCGCTGAGTTGTTATTATT
CCGGCAATTTCAGTACCGGGCAACAACCTGAAACGGCGTTTTCCGGAACGAGCTATATCCAGCGAATCGGTTATCCGCCG
GGATCATCCCGCTATGCGGTCCCCGGAACCCGTGAGGACAAATCATCAGTTGCCGTTCCCCTGAAAACCACCCCTGCCAG
TGACTCATCCCGTCACCACGAGATCTGGCCCGGAGTCGTCGTCCGTGGCGTCCCTGCGAAACTCCGCCAAGAAAAAATCT
TCATCGCACCGTTCTCCGCGCCGTCAGTGCGCCGGAGTTTCTCCCTGTCACCCCGTGAGGAGGAGGAATAA

Upstream 100 bases:

>100_bases
TACGGGCCCCATCGAAACCGTGTCGTAACCACCCTTAATTCTGTTCCCACAGCATGCAGTATCAGCAGACCCTGCATGTC
ACTTGTTTACTGAGGTCACC

Downstream 100 bases:

>100_bases
TGATACTTTTCCGCAAGCTAAAAGCTGTGGTCCCCCCCGTTTCGGCCTGTACGCTGACGACTTTTTCTGCAACCCCGGCA
CTGGCCGACGGATTTCAGCG

Product: type IV secretory pathway VirB1 component

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 236; Mature: 236

Protein sequence:

>236_residues
MLSTTAFLAIAMQCAASIHPSTAFDVARVESGFNPYAIAEIVPKAGPSFGDQHIISHLPASRGDAEQILRRLTAQDRRYS
VGLMQITSTNFRHYGVSATELLDPCTNLSVFEHILRDCYRRGGTLKRALSCYYSGNFSTGQQPETAFSGTSYIQRIGYPP
GSSRYAVPGTREDKSSVAVPLKTTPASDSSRHHEIWPGVVVRGVPAKLRQEKIFIAPFSAPSVRRSFSLSPREEEE

Sequences:

>Translated_236_residues
MLSTTAFLAIAMQCAASIHPSTAFDVARVESGFNPYAIAEIVPKAGPSFGDQHIISHLPASRGDAEQILRRLTAQDRRYS
VGLMQITSTNFRHYGVSATELLDPCTNLSVFEHILRDCYRRGGTLKRALSCYYSGNFSTGQQPETAFSGTSYIQRIGYPP
GSSRYAVPGTREDKSSVAVPLKTTPASDSSRHHEIWPGVVVRGVPAKLRQEKIFIAPFSAPSVRRSFSLSPREEEE
>Mature_236_residues
MLSTTAFLAIAMQCAASIHPSTAFDVARVESGFNPYAIAEIVPKAGPSFGDQHIISHLPASRGDAEQILRRLTAQDRRYS
VGLMQITSTNFRHYGVSATELLDPCTNLSVFEHILRDCYRRGGTLKRALSCYYSGNFSTGQQPETAFSGTSYIQRIGYPP
GSSRYAVPGTREDKSSVAVPLKTTPASDSSRHHEIWPGVVVRGVPAKLRQEKIFIAPFSAPSVRRSFSLSPREEEE

Specific function: The virB operon is essential for intracellular survival and is not involved in the invasion process. Constitutes a major determinant of virulence in mice [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the virb1 family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR008258 [H]

Pfam domain/function: PF01464 SLT [H]

EC number: NA

Molecular weight: Translated: 25911; Mature: 25911

Theoretical pI: Translated: 9.13; Mature: 9.13

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLSTTAFLAIAMQCAASIHPSTAFDVARVESGFNPYAIAEIVPKAGPSFGDQHIISHLPA
CCCHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCHHHHHHHCCCCCCCHHHHHHHCCC
SRGDAEQILRRLTAQDRRYSVGLMQITSTNFRHYGVSATELLDPCTNLSVFEHILRDCYR
CCCCHHHHHHHHHHCCCCEEEEEEEEECCCCEECCCCHHHHHCCCCCHHHHHHHHHHHHH
RGGTLKRALSCYYSGNFSTGQQPETAFSGTSYIQRIGYPPGSSRYAVPGTREDKSSVAVP
CCCHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCEECCCCCCCCCCEEEE
LKTTPASDSSRHHEIWPGVVVRGVPAKLRQEKIFIAPFSAPSVRRSFSLSPREEEE
EECCCCCCCCCCCCCCCCCEEECCCHHHCCCEEEEEECCCCHHHHHCCCCCCCCCC
>Mature Secondary Structure
MLSTTAFLAIAMQCAASIHPSTAFDVARVESGFNPYAIAEIVPKAGPSFGDQHIISHLPA
CCCHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCHHHHHHHCCCCCCCHHHHHHHCCC
SRGDAEQILRRLTAQDRRYSVGLMQITSTNFRHYGVSATELLDPCTNLSVFEHILRDCYR
CCCCHHHHHHHHHHCCCCEEEEEEEEECCCCEECCCCHHHHHCCCCCHHHHHHHHHHHHH
RGGTLKRALSCYYSGNFSTGQQPETAFSGTSYIQRIGYPPGSSRYAVPGTREDKSSVAVP
CCCHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCEECCCCCCCCCCEEEE
LKTTPASDSSRHHEIWPGVVVRGVPAKLRQEKIFIAPFSAPSVRRSFSLSPREEEE
EECCCCCCCCCCCCCCCCCEEECCCHHHCCCEEEEEECCCCHHHHHCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 10940027 [H]