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The map label for this gene is yhjC [H]

Identifier: 238895494

GI number: 238895494

Start: 3380023

End: 3380943

Strand: Direct

Name: yhjC [H]

Synonym: KP1_3566

Alternate gene names: 238895494

Gene position: 3380023-3380943 (Clockwise)

Preceding gene: 238895492

Following gene: 238895495

Centisome position: 64.4

GC content: 56.57

Gene sequence:

>921_bases
ATGGATCGTTTCGATGCAATGCGCGCCTTTGCTCGGGTGGTAGAGGCAGGGAGCTTCACGAAGGCTGCCCAAACGCTTCA
TATGAGCAAAACCACTGTGACGCAACTCATTCAGCAGCTGGAATCGCGCCTGCGCGTCAGATTGCTCCATCGCACCACCC
GCAAGCTCGGTGTGACTCCCGATGGCGCGGTCTACTACGAACGCGTCATTCGTCTGCTGGCGGACATGGAGGATGCTGAA
AACAGCCTGTCCAGTGCGGCGATGACGCCCAGGGGACGGCTACGGGTGGATGTACCGAGTCCGCTGGCCCGTCTTATTCT
GGTGCCGGCGCTACCGGCTTTCCACGCCCGCTACCCTGATATCCAGATCGACATGGGTGTGAGCGACCGGGAAGTGGATC
TGATCGGCGACAACGTGGATTGCGTTCTGCGCGGTGGTCAAATCACCGACCAGTCCCTAATCGCACGCCATGTCGGCGAT
TTGCAAATCGGCGTCTACGTCGCCCCCAGCTATGTGGAACGCCTTGGCGCTCCCGCACACCCGCGCGAGCTGCAAAATAC
TGACCATTGCATAGTGGGATTCTTGTCCTCGCGCACCAGTAAGATTGATCCTTTGGTACTGTGCAGTGAGAATGAACGTA
TTGAAATCACGGGCAACTACGTACTTGCCGTGGATGATGGCAATGCTTGCCTCGAAGCTGGGTTAGTTGGCTTAGGCGTG
ATTGCGCTGCCCAACTATATGGCGGCAGCGCATCAGGCCGTTGGCGCTTTGATTCCATTATTTACACAATGGCGGATTAG
CCCAATGCCTCTGTACCTGGCGTTTCCACCGAACCGCCATGTCAACGCCAAGCTGCGCGTTTTTATTGACTGGATCGTTG
AATTGATGGAGCAGCATGTCCCCATTGCCAACAATCAGTGA

Upstream 100 bases:

>100_bases
GTAAAGACACTGTACAACGACGAGATCGGGCGGATAAACAAGCGACTTTGTCCCTCATTGTTTGTAATATCCAAACAATC
GATGAAAGACAGGATAAGAA

Downstream 100 bases:

>100_bases
CGCCATCCCGTGATTCGCTTATCAGCGGCGATGGGGGTCATTCCCGTTGTTTTGAACGAAAGTGAATAATAGAAATCGTT
TTCCCAATTTAAATATTTAT

Product: LysR-family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 306; Mature: 306

Protein sequence:

>306_residues
MDRFDAMRAFARVVEAGSFTKAAQTLHMSKTTVTQLIQQLESRLRVRLLHRTTRKLGVTPDGAVYYERVIRLLADMEDAE
NSLSSAAMTPRGRLRVDVPSPLARLILVPALPAFHARYPDIQIDMGVSDREVDLIGDNVDCVLRGGQITDQSLIARHVGD
LQIGVYVAPSYVERLGAPAHPRELQNTDHCIVGFLSSRTSKIDPLVLCSENERIEITGNYVLAVDDGNACLEAGLVGLGV
IALPNYMAAAHQAVGALIPLFTQWRISPMPLYLAFPPNRHVNAKLRVFIDWIVELMEQHVPIANNQ

Sequences:

>Translated_306_residues
MDRFDAMRAFARVVEAGSFTKAAQTLHMSKTTVTQLIQQLESRLRVRLLHRTTRKLGVTPDGAVYYERVIRLLADMEDAE
NSLSSAAMTPRGRLRVDVPSPLARLILVPALPAFHARYPDIQIDMGVSDREVDLIGDNVDCVLRGGQITDQSLIARHVGD
LQIGVYVAPSYVERLGAPAHPRELQNTDHCIVGFLSSRTSKIDPLVLCSENERIEITGNYVLAVDDGNACLEAGLVGLGV
IALPNYMAAAHQAVGALIPLFTQWRISPMPLYLAFPPNRHVNAKLRVFIDWIVELMEQHVPIANNQ
>Mature_306_residues
MDRFDAMRAFARVVEAGSFTKAAQTLHMSKTTVTQLIQQLESRLRVRLLHRTTRKLGVTPDGAVYYERVIRLLADMEDAE
NSLSSAAMTPRGRLRVDVPSPLARLILVPALPAFHARYPDIQIDMGVSDREVDLIGDNVDCVLRGGQITDQSLIARHVGD
LQIGVYVAPSYVERLGAPAHPRELQNTDHCIVGFLSSRTSKIDPLVLCSENERIEITGNYVLAVDDGNACLEAGLVGLGV
IALPNYMAAAHQAVGALIPLFTQWRISPMPLYLAFPPNRHVNAKLRVFIDWIVELMEQHVPIANNQ

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI145693193, Length=300, Percent_Identity=31.6666666666667, Blast_Score=177, Evalue=1e-45,
Organism=Escherichia coli, GI1786401, Length=296, Percent_Identity=32.4324324324324, Blast_Score=155, Evalue=3e-39,
Organism=Escherichia coli, GI1789639, Length=299, Percent_Identity=29.0969899665552, Blast_Score=134, Evalue=8e-33,
Organism=Escherichia coli, GI1787128, Length=286, Percent_Identity=28.3216783216783, Blast_Score=123, Evalue=1e-29,
Organism=Escherichia coli, GI1789440, Length=301, Percent_Identity=25.2491694352159, Blast_Score=103, Evalue=2e-23,
Organism=Escherichia coli, GI1787589, Length=283, Percent_Identity=27.208480565371, Blast_Score=102, Evalue=3e-23,
Organism=Escherichia coli, GI87081978, Length=300, Percent_Identity=27, Blast_Score=98, Evalue=5e-22,
Organism=Escherichia coli, GI1789173, Length=295, Percent_Identity=24.7457627118644, Blast_Score=75, Evalue=7e-15,
Organism=Escherichia coli, GI157672245, Length=122, Percent_Identity=33.6065573770492, Blast_Score=72, Evalue=6e-14,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 33848; Mature: 33848

Theoretical pI: Translated: 6.79; Mature: 6.79

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDRFDAMRAFARVVEAGSFTKAAQTLHMSKTTVTQLIQQLESRLRVRLLHRTTRKLGVTP
CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
DGAVYYERVIRLLADMEDAENSLSSAAMTPRGRLRVDVPSPLARLILVPALPAFHARYPD
CCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCHHHHHHHHHCCHHHHCCCCC
IQIDMGVSDREVDLIGDNVDCVLRGGQITDQSLIARHVGDLQIGVYVAPSYVERLGAPAH
EEEECCCCCCEEEEECCCEEEEEECCCCCHHHHHHHHHCCEEEEEEECHHHHHHCCCCCC
PRELQNTDHCIVGFLSSRTSKIDPLVLCSENERIEITGNYVLAVDDGNACLEAGLVGLGV
CHHHCCCCCEEEEEHHCCCCCCCEEEEECCCCEEEEECCEEEEECCCCHHHHHHHHHHHH
IALPNYMAAAHQAVGALIPLFTQWRISPMPLYLAFPPNRHVNAKLRVFIDWIVELMEQHV
HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCC
PIANNQ
CCCCCC
>Mature Secondary Structure
MDRFDAMRAFARVVEAGSFTKAAQTLHMSKTTVTQLIQQLESRLRVRLLHRTTRKLGVTP
CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
DGAVYYERVIRLLADMEDAENSLSSAAMTPRGRLRVDVPSPLARLILVPALPAFHARYPD
CCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCHHHHHHHHHCCHHHHCCCCC
IQIDMGVSDREVDLIGDNVDCVLRGGQITDQSLIARHVGDLQIGVYVAPSYVERLGAPAH
EEEECCCCCCEEEEECCCEEEEEECCCCCHHHHHHHHHCCEEEEEEECHHHHHHCCCCCC
PRELQNTDHCIVGFLSSRTSKIDPLVLCSENERIEITGNYVLAVDDGNACLEAGLVGLGV
CHHHCCCCCEEEEEHHCCCCCCCEEEEECCCCEEEEECCEEEEECCCCHHHHHHHHHHHH
IALPNYMAAAHQAVGALIPLFTQWRISPMPLYLAFPPNRHVNAKLRVFIDWIVELMEQHV
HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCC
PIANNQ
CCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8041620; 9278503 [H]