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The map label for this gene is oprF [H]

Identifier: 238895326

GI number: 238895326

Start: 3211181

End: 3212878

Strand: Reverse

Name: oprF [H]

Synonym: KP1_3385

Alternate gene names: 238895326

Gene position: 3212878-3211181 (Counterclockwise)

Preceding gene: 238895327

Following gene: 238895325

Centisome position: 61.21

GC content: 65.84

Gene sequence:

>1698_bases
ATGCGTGATAACGCTCGTCGTCTGCTTACGATACTGACCGTCATCCTGGCCCTGTGGCTAGTGCTGGGCTTCTGGCCGCT
GTCCATCGGCAACCAGGTGATCTTCAGTCTGTGCATCCTGCTGGCGGGCGGCGCGGCGCTCTGGCGTCAGCGTCGCCGGG
CAGTCAGCCGTCAGCGATCGGAAATCGTCCTGCCGCCCGAGGATTTTCAGGGGGCAGTGGTTCTGGTCTGCGGGGATACC
GACGGTCTGTTTCCCGGGCGTTCGGCGCACGGCGAAACCCGTCACGGCTGGTATCTACGGGGAGACAGCGCGGAGCAATT
GCCGGGGCTGGCGCAGTACCTGGCGGCGGCGCGTCCGGCACTGGTATCGCAGGTTTCCGTGCTGCTGGCGGTGGTACCGG
AGCACCACCCCTCCGGGGAGCATCTGGCGCAGTCGCTGCGCGACTGGCGGCGGAGTATCGTTCAGTGCCGAACCTGGCTA
AACGGTCTGCCGCCGGTGTGGAGCGTGTTCTGGGTGACGCCGCCAGGCGGCCAGGCAGGGGAAAGCCGCTGGTTTACCAT
CACGCCGGAGAGGCCTGGGCTCCAGGTGCAGCAGAAGGGACAAGCGCCCCAGGCGGTTGCCGGGTGGCAGCGGGAGGGCA
GCCCTGCCTCACGCCTGCATCAGACGCTGTGGCTGGAGAGCATTCTGACCTTGGCCGAAAACGCTCTTTTCCGGCCATTC
CGCGCCCGGCAGGCGGAACTTCCTCCGCTGAACCTGTGTGCCGCGGGCATCTGCCTGACACCGGTAGCGGCGGTGGCGAA
TAACCTCTGGCAACAGCAAATCGCCGCGATCACCACGCTCTCCCCGGGCAACGACGCGGCGCCAGGTCCTCACCCGCTGC
CGGATCTTCTTCTGTCGTCACTGCCGCACCGCCACGGGGTCAGCCGCCGGATGCGCGATGCCGGTCTTTCCGCTGGGGTG
GGCTTCCTCTTTCTGGCGCTGGCGATGCTGGCTTCCTTTATCAACAACCAGCGCCTGGTGCGCAGCGTCGGCGATCATCT
GGCGGTGTACCACCGCCTCAGCGGCACGCCGCCGACGCCGAAGCTGCAGGCGCAGCAGCGTCTGCGTGCCGACAGCCGCC
TGCTGGATGACTGGTTGCGCCGGGGGGAGCCGCTGCGTTATCGGCTGGGGCTGTATCAGGGGGGGCGGCTGATCCCCTTC
GTGGAAGCCGCTATCAATGACTGGGCGCCGCCCCCGCCGCCGCGTCCGGTCATTAAGCAGGTTGTGCAGGGGCCGCAGAC
GATCCGCCTCGATAGCATGGCGCTGTTCGATACCGGCAAATCGGCGCTGAAACCGGGTTCGACAAAGCTGCTGGTGAACT
CGCTGCTGGGCATTAAGGCCAAACCCGGCTGGCTGATCGTGGTGGCAGGCCATACCGACAGCATCGGCAACGATAGATCC
AATCAACAACTCTCCCTGAAGCGTGCCGAGGCGGTCCGCGACTGGATGCGCGATACCGGCGATGTGCCGGAGAGCTGTTT
TGCGGTGCAGGGCTACGGCGCAAGCCGTCCTGTCGCCAGCAACGAGACGCCAGAGGGGCGGGCGCAAAATCGCCGGGTGG
AGATCAGTCTGGTCCCGCAGAAGGACGCCTGTCTGACGCCGGGCACGGCCAATACCTCAGGAGTAGAGACTAACGGATTA
AAAAGCGAAACCGAGTAA

Upstream 100 bases:

>100_bases
CGGCTGGGCGGCTGGCATTGTGGCGCTGGCGGCGCTGTGGTTGACCTGCTCCGCCATGCTGTCACAGATGGTGGCGCAGA
TAGCAGGGCAGGGATAAGAG

Downstream 100 bases:

>100_bases
TCCGCGACCCCGATCGCGGAGGTTGAACAACAATCTGCCTGCCTGACCTTGTGCGCTACGGGTTCCTGATAAACAGGAAA
CAGCGATGGGCGGTAGCGTG

Product: hypothetical protein

Products: NA

Alternate protein names: Root adhesin [H]

Number of amino acids: Translated: 565; Mature: 565

Protein sequence:

>565_residues
MRDNARRLLTILTVILALWLVLGFWPLSIGNQVIFSLCILLAGGAALWRQRRRAVSRQRSEIVLPPEDFQGAVVLVCGDT
DGLFPGRSAHGETRHGWYLRGDSAEQLPGLAQYLAAARPALVSQVSVLLAVVPEHHPSGEHLAQSLRDWRRSIVQCRTWL
NGLPPVWSVFWVTPPGGQAGESRWFTITPERPGLQVQQKGQAPQAVAGWQREGSPASRLHQTLWLESILTLAENALFRPF
RARQAELPPLNLCAAGICLTPVAAVANNLWQQQIAAITTLSPGNDAAPGPHPLPDLLLSSLPHRHGVSRRMRDAGLSAGV
GFLFLALAMLASFINNQRLVRSVGDHLAVYHRLSGTPPTPKLQAQQRLRADSRLLDDWLRRGEPLRYRLGLYQGGRLIPF
VEAAINDWAPPPPPRPVIKQVVQGPQTIRLDSMALFDTGKSALKPGSTKLLVNSLLGIKAKPGWLIVVAGHTDSIGNDRS
NQQLSLKRAEAVRDWMRDTGDVPESCFAVQGYGASRPVASNETPEGRAQNRRVEISLVPQKDACLTPGTANTSGVETNGL
KSETE

Sequences:

>Translated_565_residues
MRDNARRLLTILTVILALWLVLGFWPLSIGNQVIFSLCILLAGGAALWRQRRRAVSRQRSEIVLPPEDFQGAVVLVCGDT
DGLFPGRSAHGETRHGWYLRGDSAEQLPGLAQYLAAARPALVSQVSVLLAVVPEHHPSGEHLAQSLRDWRRSIVQCRTWL
NGLPPVWSVFWVTPPGGQAGESRWFTITPERPGLQVQQKGQAPQAVAGWQREGSPASRLHQTLWLESILTLAENALFRPF
RARQAELPPLNLCAAGICLTPVAAVANNLWQQQIAAITTLSPGNDAAPGPHPLPDLLLSSLPHRHGVSRRMRDAGLSAGV
GFLFLALAMLASFINNQRLVRSVGDHLAVYHRLSGTPPTPKLQAQQRLRADSRLLDDWLRRGEPLRYRLGLYQGGRLIPF
VEAAINDWAPPPPPRPVIKQVVQGPQTIRLDSMALFDTGKSALKPGSTKLLVNSLLGIKAKPGWLIVVAGHTDSIGNDRS
NQQLSLKRAEAVRDWMRDTGDVPESCFAVQGYGASRPVASNETPEGRAQNRRVEISLVPQKDACLTPGTANTSGVETNGL
KSETE
>Mature_565_residues
MRDNARRLLTILTVILALWLVLGFWPLSIGNQVIFSLCILLAGGAALWRQRRRAVSRQRSEIVLPPEDFQGAVVLVCGDT
DGLFPGRSAHGETRHGWYLRGDSAEQLPGLAQYLAAARPALVSQVSVLLAVVPEHHPSGEHLAQSLRDWRRSIVQCRTWL
NGLPPVWSVFWVTPPGGQAGESRWFTITPERPGLQVQQKGQAPQAVAGWQREGSPASRLHQTLWLESILTLAENALFRPF
RARQAELPPLNLCAAGICLTPVAAVANNLWQQQIAAITTLSPGNDAAPGPHPLPDLLLSSLPHRHGVSRRMRDAGLSAGV
GFLFLALAMLASFINNQRLVRSVGDHLAVYHRLSGTPPTPKLQAQQRLRADSRLLDDWLRRGEPLRYRLGLYQGGRLIPF
VEAAINDWAPPPPPRPVIKQVVQGPQTIRLDSMALFDTGKSALKPGSTKLLVNSLLGIKAKPGWLIVVAGHTDSIGNDRS
NQQLSLKRAEAVRDWMRDTGDVPESCFAVQGYGASRPVASNETPEGRAQNRRVEISLVPQKDACLTPGTANTSGVETNGL
KSETE

Specific function: Known to stabilize the outer membrane [H]

COG id: COG2885

COG function: function code M; Outer membrane protein and related peptidoglycan-associated (lipo)proteins

Gene ontology:

Cell location: Cell outer membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 OmpA-like domain [H]

Homologues:

Organism=Escherichia coli, GI48994946, Length=104, Percent_Identity=41.3461538461538, Blast_Score=75, Evalue=1e-14,
Organism=Escherichia coli, GI1788957, Length=69, Percent_Identity=47.8260869565217, Blast_Score=69, Evalue=6e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011250
- InterPro:   IPR006664
- InterPro:   IPR006690
- InterPro:   IPR006665
- InterPro:   IPR008722 [H]

Pfam domain/function: PF00691 OmpA; PF05736 OprF [H]

EC number: NA

Molecular weight: Translated: 61721; Mature: 61721

Theoretical pI: Translated: 10.46; Mature: 10.46

Prosite motif: PS51123 OMPA_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
0.9 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
0.9 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRDNARRLLTILTVILALWLVLGFWPLSIGNQVIFSLCILLAGGAALWRQRRRAVSRQRS
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCC
EIVLPPEDFQGAVVLVCGDTDGLFPGRSAHGETRHGWYLRGDSAEQLPGLAQYLAAARPA
CEECCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCEEEECCCHHHCCHHHHHHHHHHHH
LVSQVSVLLAVVPEHHPSGEHLAQSLRDWRRSIVQCRTWLNGLPPVWSVFWVTPPGGQAG
HHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCC
ESRWFTITPERPGLQVQQKGQAPQAVAGWQREGSPASRLHQTLWLESILTLAENALFRPF
CCCEEEECCCCCCCCHHHCCCCCHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCH
RARQAELPPLNLCAAGICLTPVAAVANNLWQQQIAAITTLSPGNDAAPGPHPLPDLLLSS
HHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCCCCCCCCCCHHHHHHH
LPHRHGVSRRMRDAGLSAGVGFLFLALAMLASFINNQRLVRSVGDHLAVYHRLSGTPPTP
CCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCCC
KLQAQQRLRADSRLLDDWLRRGEPLRYRLGLYQGGRLIPFVEAAINDWAPPPPPRPVIKQ
CHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHHHHHHHCCCCCCCCHHHHHH
VVQGPQTIRLDSMALFDTGKSALKPGSTKLLVNSLLGIKAKPGWLIVVAGHTDSIGNDRS
HHCCCCEEEECCEEHHHCCHHHCCCCCHHHHHHHHHCCCCCCCEEEEEECCCCCCCCCCC
NQQLSLKRAEAVRDWMRDTGDVPESCFAVQGYGASRPVASNETPEGRAQNRRVEISLVPQ
CCHHHHHHHHHHHHHHHHCCCCCCHHEEEECCCCCCCCCCCCCCCCCCCCCEEEEEEECC
KDACLTPGTANTSGVETNGLKSETE
CCCCCCCCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure
MRDNARRLLTILTVILALWLVLGFWPLSIGNQVIFSLCILLAGGAALWRQRRRAVSRQRS
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCC
EIVLPPEDFQGAVVLVCGDTDGLFPGRSAHGETRHGWYLRGDSAEQLPGLAQYLAAARPA
CEECCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCEEEECCCHHHCCHHHHHHHHHHHH
LVSQVSVLLAVVPEHHPSGEHLAQSLRDWRRSIVQCRTWLNGLPPVWSVFWVTPPGGQAG
HHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCC
ESRWFTITPERPGLQVQQKGQAPQAVAGWQREGSPASRLHQTLWLESILTLAENALFRPF
CCCEEEECCCCCCCCHHHCCCCCHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCH
RARQAELPPLNLCAAGICLTPVAAVANNLWQQQIAAITTLSPGNDAAPGPHPLPDLLLSS
HHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCCCCCCCCCCHHHHHHH
LPHRHGVSRRMRDAGLSAGVGFLFLALAMLASFINNQRLVRSVGDHLAVYHRLSGTPPTP
CCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCCC
KLQAQQRLRADSRLLDDWLRRGEPLRYRLGLYQGGRLIPFVEAAINDWAPPPPPRPVIKQ
CHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHHHHHHHCCCCCCCCHHHHHH
VVQGPQTIRLDSMALFDTGKSALKPGSTKLLVNSLLGIKAKPGWLIVVAGHTDSIGNDRS
HHCCCCEEEECCEEHHHCCHHHCCCCCHHHHHHHHHCCCCCCCEEEEEECCCCCCCCCCC
NQQLSLKRAEAVRDWMRDTGDVPESCFAVQGYGASRPVASNETPEGRAQNRRVEISLVPQ
CCHHHHHHHHHHHHHHHHCCCCCCHHEEEECCCCCCCCCCCCCCCCCCCCCEEEEEEECC
KDACLTPGTANTSGVETNGLKSETE
CCCCCCCCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 1538702 [H]