Click here to switch to the map view.

The map label for this gene is ltrA [H]

Identifier: 238895200

GI number: 238895200

Start: 3082128

End: 3083039

Strand: Direct

Name: ltrA [H]

Synonym: KP1_3246

Alternate gene names: 238895200

Gene position: 3082128-3083039 (Clockwise)

Preceding gene: 238895195

Following gene: 238895201

Centisome position: 58.72

GC content: 64.36

Gene sequence:

>912_bases
ATGAATACCTCTATTCCCTGGGAGTGGTACCGAACCTTTCTCGCCGTCCTGCAGGAAGGCTCTTTATCGGGCGCATCGCG
TACCCTGAACATCACTCAGCCGACGGCGGGGCGCCATATTGCCGGGCTGGAAAACGCCCTCGGCCAGGCCTTATTTACCC
GCTCGCAAACCGGCCTGCTGGCGACCGACGCGGCGCTGGCGCTGCGGGTGCACGCCGAGGAGATGGACAATACCGCCCGG
GCGCTGGAACGCACGGCGGCTAACTTCAGTCGCGACAGAGCCGAGCTGCGTGGCGTGGTGCGGGTGGCCGCCAGCGAGGT
GGTCGGCGCCGAGGTGCTGCCGCCGCTGGTTGCCCGGCTCAGGCAGGCGTGCCCGAATATCGTCATCGAACTGATGCTCT
CCAATCGGTTTCAGGATCTGCTTCACCGGGAGGCGGATATTGCGGTGCGGATGGTCGCCCCGCAGCAGGAGCAGCTTATC
GCCCGCCGTCTCGGCAGGATCGAGCTTGGGTTACATGCCACCGCCGCCTACCTGACGCGGCAGAGCCTGCCCGCGACCCT
CGACGATCTGGCCAGCCACGCGCTAATTGGTTTTGATAGCGCCACCCCTCTCGTGCGCCGGGCGCTGCAGGCTTACCCCC
GTTTTCAGCGCGAGGCGTTCGCGATGCGGACCGATAGCGACCTCGCCCAGTTGAGCCTGATCCGCGCCGGAGCGGGGATC
GGCATCTGCCAGGTGCCTCTTGCGGATGGCATTATTCCCCTGCAGCGAGTGCTGGCGGCAGACTTTTCTCTGTATCTTGA
TACCTGGCTGGTAATGCATGAGGATCTGCGCCACAGCCCTGCCTGTAAGCGGGTATTTGATTTTCTCGCCCAGGGGTTGC
AGGCGTATATTCGTGGCCCACTGGCGAGCTGA

Upstream 100 bases:

>100_bases
TCATCCTCTTTCCCCGTTCGCTAATGGATGCTTGACAGCCTACCTGCGGCTCATATCAAATGAAATTGCATACCATCGTC
GAGCGGCTATACATATTTGT

Downstream 100 bases:

>100_bases
CCCACCCCATCGCGCGGGCATTTCATTGCCTGCGGAAATAGTCACTCATTGACACTGTAAATATGGCATTGTATAAAACC
CCGCCCCAATAATGAGTTTC

Product: putative LysR-family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 303; Mature: 303

Protein sequence:

>303_residues
MNTSIPWEWYRTFLAVLQEGSLSGASRTLNITQPTAGRHIAGLENALGQALFTRSQTGLLATDAALALRVHAEEMDNTAR
ALERTAANFSRDRAELRGVVRVAASEVVGAEVLPPLVARLRQACPNIVIELMLSNRFQDLLHREADIAVRMVAPQQEQLI
ARRLGRIELGLHATAAYLTRQSLPATLDDLASHALIGFDSATPLVRRALQAYPRFQREAFAMRTDSDLAQLSLIRAGAGI
GICQVPLADGIIPLQRVLAADFSLYLDTWLVMHEDLRHSPACKRVFDFLAQGLQAYIRGPLAS

Sequences:

>Translated_303_residues
MNTSIPWEWYRTFLAVLQEGSLSGASRTLNITQPTAGRHIAGLENALGQALFTRSQTGLLATDAALALRVHAEEMDNTAR
ALERTAANFSRDRAELRGVVRVAASEVVGAEVLPPLVARLRQACPNIVIELMLSNRFQDLLHREADIAVRMVAPQQEQLI
ARRLGRIELGLHATAAYLTRQSLPATLDDLASHALIGFDSATPLVRRALQAYPRFQREAFAMRTDSDLAQLSLIRAGAGI
GICQVPLADGIIPLQRVLAADFSLYLDTWLVMHEDLRHSPACKRVFDFLAQGLQAYIRGPLAS
>Mature_303_residues
MNTSIPWEWYRTFLAVLQEGSLSGASRTLNITQPTAGRHIAGLENALGQALFTRSQTGLLATDAALALRVHAEEMDNTAR
ALERTAANFSRDRAELRGVVRVAASEVVGAEVLPPLVARLRQACPNIVIELMLSNRFQDLLHREADIAVRMVAPQQEQLI
ARRLGRIELGLHATAAYLTRQSLPATLDDLASHALIGFDSATPLVRRALQAYPRFQREAFAMRTDSDLAQLSLIRAGAGI
GICQVPLADGIIPLQRVLAADFSLYLDTWLVMHEDLRHSPACKRVFDFLAQGLQAYIRGPLAS

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI145693193, Length=246, Percent_Identity=25.609756097561, Blast_Score=71, Evalue=9e-14,
Organism=Escherichia coli, GI1786401, Length=186, Percent_Identity=26.3440860215054, Blast_Score=70, Evalue=2e-13,
Organism=Escherichia coli, GI1789639, Length=186, Percent_Identity=24.7311827956989, Blast_Score=67, Evalue=2e-12,
Organism=Escherichia coli, GI1787601, Length=142, Percent_Identity=27.4647887323944, Blast_Score=65, Evalue=5e-12,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 33250; Mature: 33250

Theoretical pI: Translated: 8.11; Mature: 8.11

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNTSIPWEWYRTFLAVLQEGSLSGASRTLNITQPTAGRHIAGLENALGQALFTRSQTGLL
CCCCCCHHHHHHHHHHHHCCCCCCCCCEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCE
ATDAALALRVHAEEMDNTARALERTAANFSRDRAELRGVVRVAASEVVGAEVLPPLVARL
EHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
RQACPNIVIELMLSNRFQDLLHREADIAVRMVAPQQEQLIARRLGRIELGLHATAAYLTR
HHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEECCCHHHHHHHHHCCHHHHHHHHHHHHHH
QSLPATLDDLASHALIGFDSATPLVRRALQAYPRFQREAFAMRTDSDLAQLSLIRAGAGI
HCCCCCHHHHHHHHEECCCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCC
GICQVPLADGIIPLQRVLAADFSLYLDTWLVMHEDLRHSPACKRVFDFLAQGLQAYIRGP
CEEECCHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCC
LAS
CCC
>Mature Secondary Structure
MNTSIPWEWYRTFLAVLQEGSLSGASRTLNITQPTAGRHIAGLENALGQALFTRSQTGLL
CCCCCCHHHHHHHHHHHHCCCCCCCCCEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCE
ATDAALALRVHAEEMDNTARALERTAANFSRDRAELRGVVRVAASEVVGAEVLPPLVARL
EHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
RQACPNIVIELMLSNRFQDLLHREADIAVRMVAPQQEQLIARRLGRIELGLHATAAYLTR
HHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEECCCHHHHHHHHHCCHHHHHHHHHHHHHH
QSLPATLDDLASHALIGFDSATPLVRRALQAYPRFQREAFAMRTDSDLAQLSLIRAGAGI
HCCCCCHHHHHHHHEECCCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCC
GICQVPLADGIIPLQRVLAADFSLYLDTWLVMHEDLRHSPACKRVFDFLAQGLQAYIRGP
CEEECCHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCC
LAS
CCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8748036 [H]