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The map label for this gene is yjcR [C]

Identifier: 238895197

GI number: 238895197

Start: 3079150

End: 3080259

Strand: Reverse

Name: yjcR [C]

Synonym: KP1_3243

Alternate gene names: 238895197

Gene position: 3080259-3079150 (Counterclockwise)

Preceding gene: 238895198

Following gene: 238895196

Centisome position: 58.69

GC content: 70.0

Gene sequence:

>1110_bases
ATGCTCAGGCTCAACGCCGTCCATCTTGCCGTCTGCCTCCTGCCGCTGGCCCTCGCGGGCTGCGGCGAACCTGCCGATCA
TGACGACCCCCGCATCCGGCCGCCGCTGGTCCGGGTGGCGACCGTCGAGCGCGCGGAGGTCGGCTCGCGGGCCTTTACCG
GCGTGGTAGTGGCCCGAACCCAAAGCGACCTCGGCTTCAGGGTGGCGGGAAAAGTGCTTGAACGGCGGGTGGAAACCGGG
CAGAGCGTCAAGCGCGGTCAGCTGCTGCTGCGCCTGGATCCGGCTGATCTAGCCTTGCAGGCGCAGTCCCAACAGCGGGC
CGTAGATGCCGCGCGGGCGCGAGCCAAAAAGGCGGCCAACGATCTGGCCCGCTATCGCGGCCTGGTGGCGAGCGGCGCCA
TCTCTGCCGCGGAATTCGACCAGATTAACGCGGCAGCAGAGGCGGCGAGAGCCGACCTCAGCGCGGCCCAGGCGCAGGCC
AATGTGGCGCAAAACGCCACCGGCTATGCCGGACTGCTGGCGGATGCTGACGGCGTGGTGGTGGAAACCCTCGCTGAGCC
GGGACAGGTGGTCAGTGCCGGGCAGGTGGTGATCCGCCTGGCGCGGGCGGGGCAGCGCGAAGCGCGGGTGCAACTGCCGG
AGACGCTGCGCCCGGCGGTCGGCAGCGAGGCGCTGGCGACACGCTATGGCAGCGAATCTCAGCCGGTCACGGCGACCCTG
CGCCTGCTTTCGGACGCGGCTGACGCCACCACCCGCACCTTTGAAGCGCGCTATGTACTGAACGGCGCGCTGGCGAATGC
CCCGCTGGGGTCTACCGTGACCCTGCGCATCGGCAACGACCAGGCGCCAGGCCAGGTGATGGCGGTGCCCCTGGCGTCGG
TCTACGATCCGGGTAACGGCCCTGGCGTCTGGCGCATTGCCTCTCGTCCGACCACCGTCTCCTGGCAACCGGTAACTGTG
CTCGGCCTGGATGATGAAACCGCGCGGGTGACCGGCCCGCTGAAGCCCGGCGAGCCGATCGTCGCCCTGGGCGCCCATCT
TCTGCACCAGGGCGAGGCGGTGCGTCTGGCGGAACGACGCGAGCATAATGCCGCCGGGAGCCAGCCATGA

Upstream 100 bases:

>100_bases
TGATCCTGAGAAGTCTCTCCCCCTGATTAGTGACTATTGACTTTATTAGTCACTAGCCTGAGAATGCGGTCACCATCCGG
TCTTTTCATTAAGGTGACCC

Downstream 100 bases:

>100_bases
GCGCCGGGCGTTTTAATCTCTCCGCGCTGGCCGTCCGCGAGCGGTCGGTGACCCTGTTTTTGATTATCCTTATCTCCGTC
GCCGGGCTGGTGGCGTTCTT

Product: putative HlyD-family secretion protein

Products: NA

Alternate protein names: Efflux Transporter RND Family MFP Subunit; Secretion Protein HlyD; RND Efflux Membrane Fusion Protein; Component Of Multidrug Efflux System; HlyD Family Secretion Protein; RND Family Mulitdrug Efflux Protein; Transport/Efflux Transmembrane Protein; Membrane-Fusion Protein; Protein Secretion Protein; Efflux Protein; Cation/Multidrug Efflux System Mebrane-Fusion Component; Multidrug Efflux Transporter Protein; HlyD Family Protein Secretion Protein; Membrane Fusion Protein; Multidrug Efflux Protein; Efflux Transporter; Membrane Efflux Protein; Lipoprotein; Acriflavin Resistance Protein A; AbgT Transporter; Component Of Multidrug Efflux Protein; Multidrug Efflux; Efflux Transporter RND Family; RND Membrane Fusion Protein; Multidrug RND Transporter Membrane Fusion Protein; Efflux System Protein; Efflux Transmembrane Protein; HlyD-Family Secretion Protein; Component Of Multidrug Efflux System Protein; Auxiliary Transport Protein MFP Family; Protein Secretion Protein HlyD Family; RND Family Efflux Transporter Subunit MFP; Secretion Protein; RND Efflux Transporter; Periplasmic Multidrug Efflux Lipoprotein; Acriflavin Resistance Periplasmic Protein; Efflux Transporter Rnd Family Mfp Subunit; RND Superfamily Transporter Membrane- Fusion Protein; RND Family Efflux Transporter; Rnd Efflux Membrane Fusion Protein; RND/Acr Family Transmembrane Transporter

Number of amino acids: Translated: 369; Mature: 369

Protein sequence:

>369_residues
MLRLNAVHLAVCLLPLALAGCGEPADHDDPRIRPPLVRVATVERAEVGSRAFTGVVVARTQSDLGFRVAGKVLERRVETG
QSVKRGQLLLRLDPADLALQAQSQQRAVDAARARAKKAANDLARYRGLVASGAISAAEFDQINAAAEAARADLSAAQAQA
NVAQNATGYAGLLADADGVVVETLAEPGQVVSAGQVVIRLARAGQREARVQLPETLRPAVGSEALATRYGSESQPVTATL
RLLSDAADATTRTFEARYVLNGALANAPLGSTVTLRIGNDQAPGQVMAVPLASVYDPGNGPGVWRIASRPTTVSWQPVTV
LGLDDETARVTGPLKPGEPIVALGAHLLHQGEAVRLAERREHNAAGSQP

Sequences:

>Translated_369_residues
MLRLNAVHLAVCLLPLALAGCGEPADHDDPRIRPPLVRVATVERAEVGSRAFTGVVVARTQSDLGFRVAGKVLERRVETG
QSVKRGQLLLRLDPADLALQAQSQQRAVDAARARAKKAANDLARYRGLVASGAISAAEFDQINAAAEAARADLSAAQAQA
NVAQNATGYAGLLADADGVVVETLAEPGQVVSAGQVVIRLARAGQREARVQLPETLRPAVGSEALATRYGSESQPVTATL
RLLSDAADATTRTFEARYVLNGALANAPLGSTVTLRIGNDQAPGQVMAVPLASVYDPGNGPGVWRIASRPTTVSWQPVTV
LGLDDETARVTGPLKPGEPIVALGAHLLHQGEAVRLAERREHNAAGSQP
>Mature_369_residues
MLRLNAVHLAVCLLPLALAGCGEPADHDDPRIRPPLVRVATVERAEVGSRAFTGVVVARTQSDLGFRVAGKVLERRVETG
QSVKRGQLLLRLDPADLALQAQSQQRAVDAARARAKKAANDLARYRGLVASGAISAAEFDQINAAAEAARADLSAAQAQA
NVAQNATGYAGLLADADGVVVETLAEPGQVVSAGQVVIRLARAGQREARVQLPETLRPAVGSEALATRYGSESQPVTATL
RLLSDAADATTRTFEARYVLNGALANAPLGSTVTLRIGNDQAPGQVMAVPLASVYDPGNGPGVWRIASRPTTVSWQPVTV
LGLDDETARVTGPLKPGEPIVALGAHLLHQGEAVRLAERREHNAAGSQP

Specific function: Unknown

COG id: COG0845

COG function: function code M; Membrane-fusion protein

Gene ontology:

Cell location: Inner Membrane-Bound [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 38529; Mature: 38529

Theoretical pI: Translated: 8.70; Mature: 8.70

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
0.5 %Met     (Translated Protein)
1.1 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
0.5 %Met     (Mature Protein)
1.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLRLNAVHLAVCLLPLALAGCGEPADHDDPRIRPPLVRVATVERAEVGSRAFTGVVVART
CEEEHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEEEHHHHHCCCHHHEEEEEEEC
QSDLGFRVAGKVLERRVETGQSVKRGQLLLRLDPADLALQAQSQQRAVDAARARAKKAAN
CCCCCHHHHHHHHHHHHHCCCCCCCCCEEEEECCHHHEEECHHHHHHHHHHHHHHHHHHH
DLARYRGLVASGAISAAEFDQINAAAEAARADLSAAQAQANVAQNATGYAGLLADADGVV
HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCEE
VETLAEPGQVVSAGQVVIRLARAGQREARVQLPETLRPAVGSEALATRYGSESQPVTATL
EEECCCCCCEEHHHHHHHHHHHCCCCHHEECCCHHHHHHCCCHHHHHHCCCCCCCHHHHH
RLLSDAADATTRTFEARYVLNGALANAPLGSTVTLRIGNDQAPGQVMAVPLASVYDPGNG
HHHHHHHHHHHHEEEEEEEECCHHCCCCCCCEEEEEECCCCCCCCEEEEEHHHHCCCCCC
PGVWRIASRPTTVSWQPVTVLGLDDETARVTGPLKPGEPIVALGAHLLHQGEAVRLAERR
CCEEEEECCCCEECCCCEEEEECCCCCCEEECCCCCCCCHHHHHHHHHHCCCHHHHHHHH
EHNAAGSQP
HCCCCCCCC
>Mature Secondary Structure
MLRLNAVHLAVCLLPLALAGCGEPADHDDPRIRPPLVRVATVERAEVGSRAFTGVVVART
CEEEHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEEEHHHHHCCCHHHEEEEEEEC
QSDLGFRVAGKVLERRVETGQSVKRGQLLLRLDPADLALQAQSQQRAVDAARARAKKAAN
CCCCCHHHHHHHHHHHHHCCCCCCCCCEEEEECCHHHEEECHHHHHHHHHHHHHHHHHHH
DLARYRGLVASGAISAAEFDQINAAAEAARADLSAAQAQANVAQNATGYAGLLADADGVV
HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCEE
VETLAEPGQVVSAGQVVIRLARAGQREARVQLPETLRPAVGSEALATRYGSESQPVTATL
EEECCCCCCEEHHHHHHHHHHHCCCCHHEECCCHHHHHHCCCHHHHHHCCCCCCCHHHHH
RLLSDAADATTRTFEARYVLNGALANAPLGSTVTLRIGNDQAPGQVMAVPLASVYDPGNG
HHHHHHHHHHHHEEEEEEEECCHHCCCCCCCEEEEEECCCCCCCCEEEEEHHHHCCCCCC
PGVWRIASRPTTVSWQPVTVLGLDDETARVTGPLKPGEPIVALGAHLLHQGEAVRLAERR
CCEEEEECCCCEECCCCEEEEECCCCCCEEECCCCCCCCHHHHHHHHHHCCCHHHHHHHH
EHNAAGSQP
HCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA