Click here to switch to the map view.

The map label for this gene is ydbM [H]

Identifier: 238895159

GI number: 238895159

Start: 3039779

End: 3040930

Strand: Reverse

Name: ydbM [H]

Synonym: KP1_3204

Alternate gene names: 238895159

Gene position: 3040930-3039779 (Counterclockwise)

Preceding gene: 238895160

Following gene: 238895158

Centisome position: 57.94

GC content: 66.23

Gene sequence:

>1152_bases
GTGATCCATCCTGAGCGCGACGACTGGGCCCGGCAGCTGACGGCGCTTCGCCAGCAGATGGCGGAGCAGGCGGCTAGCCT
TGACGCCAGCGGCGAGTTTCCCTGGCGTAATATCGACCATCTGCGTGCGGGGGGCTGGTTAAGCCTCGCCGTGCCGCCAT
CCTGCGGCGGCGCGGGTGCCAGTCTGGCCCAGCTGCAGCAGGTCATCGCCGCCATCGCCTGGGGAGAGCCGGCGACAGCG
CTGATTGTCTGCATGCAGTATCTCCACCATTTGCGGCTGGCGGAAAACGACGCCTGGCACGCGCCGCTGCGCCAGCAGGT
TTTTCACGATGCTGTCGAACACGGTGGCCTCATCAACAGCCTGCGCGTCGAGCCGGAGCTGGGCTCCCCGGCGCGGGGCG
GCCTGCCGGACACCGTGGCGACCCGTCGCGCGGAGGGCTGGGACATCAGCGGCCATAAAATTTATACCACCGGCATTGAA
GGGCTGCGCTGGCTGGCGGTGTGGGCCAGAAGCGATGATAACCCGCCGCTGGTGGGTACCTGGCTGGTGCCTGGCGACAG
CCCGGGTATCACGGTGGTGAAGAGCTGGGATCACGCCGGGATGCGGGCCACCGGCAGCCATGAAGTTATTTTTAACCACG
TTCGGGTGGCGGCAGAGCACGCGGTGGATGTCTGGCCGGCCGATGCGCCACCCGCCGCGGAGGCCGAACCGTTTCGCCTG
TTCGCCAACCGGCAGACAGCGCTGCTGGCGGCGATCTATGACAGCATTGCCCACGCCGCTCACGACTGGCTGGTGAGGTG
GCTGGCGGGGCGGGTGCCCGCCGGTCTCGGCCATCCGCTCTCTCGTCTGCCACGGGTGCAGGAGAAAGTCGGGCAGATCG
CCGGGCTGCTGCTGGTCAACCGCAGCCTGCTGGAGCAGGCCGCCGCGCTGCGCTTTTCCGCCATCGAGGCCAATCTGGCG
AAAGTCACCATCACCGACAACGCCATTCAGGCGGTGAATATCGCGCTCGAGCTGACCGGCAATCATGGTCTCAGCCGACA
AAACCCGCTGGAACGCCACTACCGCAATGTGCTCTGCGGACGGGTACATACCCCACAGAGCGACAGCGCCTGGCTGGCAG
CTGGCAACTTCGTCTTTCAATCACAAGGATAA

Upstream 100 bases:

>100_bases
GCGGCTTCGATCCGCTGAACGACGCGGCCGACTATGGCCGGGCGCTGCTGCCGATCGCCCGGGAAAAAGCCGCGCGGCGT
GCGGTGGCGGAGCGCGCATC

Downstream 100 bases:

>100_bases
TCACGATGCGTCTATCATTTTCAGGCCGGGTGGCGGCCGCGCTGATGCTGCTGGCGCTGGGCGGCTACGCGACAGCGCAG
GAGCGGCTTACCCTGCGTAT

Product: putative acyl-CoA dehydrogenases

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 383; Mature: 383

Protein sequence:

>383_residues
MIHPERDDWARQLTALRQQMAEQAASLDASGEFPWRNIDHLRAGGWLSLAVPPSCGGAGASLAQLQQVIAAIAWGEPATA
LIVCMQYLHHLRLAENDAWHAPLRQQVFHDAVEHGGLINSLRVEPELGSPARGGLPDTVATRRAEGWDISGHKIYTTGIE
GLRWLAVWARSDDNPPLVGTWLVPGDSPGITVVKSWDHAGMRATGSHEVIFNHVRVAAEHAVDVWPADAPPAAEAEPFRL
FANRQTALLAAIYDSIAHAAHDWLVRWLAGRVPAGLGHPLSRLPRVQEKVGQIAGLLLVNRSLLEQAAALRFSAIEANLA
KVTITDNAIQAVNIALELTGNHGLSRQNPLERHYRNVLCGRVHTPQSDSAWLAAGNFVFQSQG

Sequences:

>Translated_383_residues
MIHPERDDWARQLTALRQQMAEQAASLDASGEFPWRNIDHLRAGGWLSLAVPPSCGGAGASLAQLQQVIAAIAWGEPATA
LIVCMQYLHHLRLAENDAWHAPLRQQVFHDAVEHGGLINSLRVEPELGSPARGGLPDTVATRRAEGWDISGHKIYTTGIE
GLRWLAVWARSDDNPPLVGTWLVPGDSPGITVVKSWDHAGMRATGSHEVIFNHVRVAAEHAVDVWPADAPPAAEAEPFRL
FANRQTALLAAIYDSIAHAAHDWLVRWLAGRVPAGLGHPLSRLPRVQEKVGQIAGLLLVNRSLLEQAAALRFSAIEANLA
KVTITDNAIQAVNIALELTGNHGLSRQNPLERHYRNVLCGRVHTPQSDSAWLAAGNFVFQSQG
>Mature_383_residues
MIHPERDDWARQLTALRQQMAEQAASLDASGEFPWRNIDHLRAGGWLSLAVPPSCGGAGASLAQLQQVIAAIAWGEPATA
LIVCMQYLHHLRLAENDAWHAPLRQQVFHDAVEHGGLINSLRVEPELGSPARGGLPDTVATRRAEGWDISGHKIYTTGIE
GLRWLAVWARSDDNPPLVGTWLVPGDSPGITVVKSWDHAGMRATGSHEVIFNHVRVAAEHAVDVWPADAPPAAEAEPFRL
FANRQTALLAAIYDSIAHAAHDWLVRWLAGRVPAGLGHPLSRLPRVQEKVGQIAGLLLVNRSLLEQAAALRFSAIEANLA
KVTITDNAIQAVNIALELTGNHGLSRQNPLERHYRNVLCGRVHTPQSDSAWLAAGNFVFQSQG

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the acyl-CoA dehydrogenase family [H]

Homologues:

Organism=Homo sapiens, GI4557233, Length=357, Percent_Identity=25.4901960784314, Blast_Score=81, Evalue=1e-15,
Organism=Caenorhabditis elegans, GI17534899, Length=369, Percent_Identity=25.2032520325203, Blast_Score=93, Evalue=2e-19,
Organism=Caenorhabditis elegans, GI17569725, Length=354, Percent_Identity=25.7062146892655, Blast_Score=84, Evalue=8e-17,
Organism=Caenorhabditis elegans, GI17570075, Length=356, Percent_Identity=23.314606741573, Blast_Score=79, Evalue=4e-15,
Organism=Caenorhabditis elegans, GI17508101, Length=336, Percent_Identity=23.5119047619048, Blast_Score=74, Evalue=9e-14,
Organism=Drosophila melanogaster, GI24666513, Length=359, Percent_Identity=23.1197771587744, Blast_Score=77, Evalue=3e-14,
Organism=Drosophila melanogaster, GI24646207, Length=361, Percent_Identity=23.5457063711911, Blast_Score=74, Evalue=2e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013107
- InterPro:   IPR006092
- InterPro:   IPR006091
- InterPro:   IPR009075
- InterPro:   IPR013786
- InterPro:   IPR009100 [H]

Pfam domain/function: PF08028 Acyl-CoA_dh_2; PF02770 Acyl-CoA_dh_M; PF02771 Acyl-CoA_dh_N [H]

EC number: NA

Molecular weight: Translated: 41625; Mature: 41625

Theoretical pI: Translated: 6.80; Mature: 6.80

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
1.0 %Met     (Translated Protein)
1.8 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
1.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIHPERDDWARQLTALRQQMAEQAASLDASGEFPWRNIDHLRAGGWLSLAVPPSCGGAGA
CCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHCCCCEEEEECCCCCCCCCH
SLAQLQQVIAAIAWGEPATALIVCMQYLHHLRLAENDAWHAPLRQQVFHDAVEHGGLINS
HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCEEE
LRVEPELGSPARGGLPDTVATRRAEGWDISGHKIYTTGIEGLRWLAVWARSDDNPPLVGT
EEECCCCCCCCCCCCCCHHHHCCCCCCCCCCCEEEECCCCCEEEEEEEECCCCCCCEEEE
WLVPGDSPGITVVKSWDHAGMRATGSHEVIFNHVRVAAEHAVDVWPADAPPAAEAEPFRL
EECCCCCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHEECCCCCCCCCCCCCHHE
FANRQTALLAAIYDSIAHAAHDWLVRWLAGRVPAGLGHPLSRLPRVQEKVGQIAGLLLVN
ECCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHCHHHHHHHHHHHHHHHHH
RSLLEQAAALRFSAIEANLAKVTITDNAIQAVNIALELTGNHGLSRQNPLERHYRNVLCG
HHHHHHHHHHHHHHEECCEEEEEEECCCEEEEEEEEEEECCCCCCCCCHHHHHHHHHHHC
RVHTPQSDSAWLAAGNFVFQSQG
CCCCCCCCCCEEEECCEEEECCC
>Mature Secondary Structure
MIHPERDDWARQLTALRQQMAEQAASLDASGEFPWRNIDHLRAGGWLSLAVPPSCGGAGA
CCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHCCCCEEEEECCCCCCCCCH
SLAQLQQVIAAIAWGEPATALIVCMQYLHHLRLAENDAWHAPLRQQVFHDAVEHGGLINS
HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCEEE
LRVEPELGSPARGGLPDTVATRRAEGWDISGHKIYTTGIEGLRWLAVWARSDDNPPLVGT
EEECCCCCCCCCCCCCCHHHHCCCCCCCCCCCEEEECCCCCEEEEEEEECCCCCCCEEEE
WLVPGDSPGITVVKSWDHAGMRATGSHEVIFNHVRVAAEHAVDVWPADAPPAAEAEPFRL
EECCCCCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHEECCCCCCCCCCCCCHHE
FANRQTALLAAIYDSIAHAAHDWLVRWLAGRVPAGLGHPLSRLPRVQEKVGQIAGLLLVN
ECCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHCHHHHHHHHHHHHHHHHH
RSLLEQAAALRFSAIEANLAKVTITDNAIQAVNIALELTGNHGLSRQNPLERHYRNVLCG
HHHHHHHHHHHHHHEECCEEEEEEECCCEEEEEEEEEEECCCCCCCCCHHHHHHHHHHHC
RVHTPQSDSAWLAAGNFVFQSQG
CCCCCCCCCCEEEECCEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]