Click here to switch to the map view.

The map label for this gene is ycdK [C]

Identifier: 238895080

GI number: 238895080

Start: 2962502

End: 2962981

Strand: Direct

Name: ycdK [C]

Synonym: KP1_3112

Alternate gene names: 238895080

Gene position: 2962502-2962981 (Clockwise)

Preceding gene: 238895079

Following gene: 238895081

Centisome position: 56.44

GC content: 61.25

Gene sequence:

>480_bases
ATGAGTCTTGAAGCAGGCGCCGGGGCGCCGCTGGCGCGGTATGCCGCCTGGCGCAGAGCCGGCGATTTTATCTTTCTCTC
CGGCATTATTCCGGTCAATCCCCTGACCGGCACCATCGTCAACGGCTTTCAGGATGTGCCTGAGCCGGTGCGGGAGCTGC
TGGGGGCGACCGGCGAATTTTCAACCGATGCGAAACAGGGCCCGATCCTCGCCCAGAGCTGGTACGTCCTGGAGAGCATC
CGCCGCACCGTGGCGTCCGCGGGAGGGCAGATGAGCGACGTTATCAAACTGGTGCAGTACTTTCGCAACCTTGACCATTT
TCCCTATTACAGCCGGGTCAGGAAGCTGTTTTACCCCGACCAGCCGCCCGTTTCCACCGTGGTGCAGGTCAGCGAAATGC
TGCCCGACGCCACGGTACTGATTGAAGTCGAAGCGACCGTCTGGTTACCCCCGTCATTTAACTCCGAGGCACCGCGATGA

Upstream 100 bases:

>100_bases
GGTAGTGACCGTTTTATCTGGCCTTTAAACAGCGCCGCCCGTCTGGTGGTTAACCACGGCAGGTTAACCCACCGGCGCGT
GTGGCAGGAGGAGATGGCAC

Downstream 100 bases:

>100_bases
TTAACGGTTACATTCCTGCCGCGCGCTTTCTTCCTTTTCTGAGCTGGACGGACGTGGCCGCCCTGCCGGATAAAAGCAAT
ACGGTTATCGTCCTCCCCAC

Product: putative endoribonuclease

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 159; Mature: 158

Protein sequence:

>159_residues
MSLEAGAGAPLARYAAWRRAGDFIFLSGIIPVNPLTGTIVNGFQDVPEPVRELLGATGEFSTDAKQGPILAQSWYVLESI
RRTVASAGGQMSDVIKLVQYFRNLDHFPYYSRVRKLFYPDQPPVSTVVQVSEMLPDATVLIEVEATVWLPPSFNSEAPR

Sequences:

>Translated_159_residues
MSLEAGAGAPLARYAAWRRAGDFIFLSGIIPVNPLTGTIVNGFQDVPEPVRELLGATGEFSTDAKQGPILAQSWYVLESI
RRTVASAGGQMSDVIKLVQYFRNLDHFPYYSRVRKLFYPDQPPVSTVVQVSEMLPDATVLIEVEATVWLPPSFNSEAPR
>Mature_158_residues
SLEAGAGAPLARYAAWRRAGDFIFLSGIIPVNPLTGTIVNGFQDVPEPVRELLGATGEFSTDAKQGPILAQSWYVLESIR
RTVASAGGQMSDVIKLVQYFRNLDHFPYYSRVRKLFYPDQPPVSTVVQVSEMLPDATVLIEVEATVWLPPSFNSEAPR

Specific function: Unknown

COG id: COG0251

COG function: function code J; Putative translation initiation inhibitor, yjgF family

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the RutC family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013813
- InterPro:   IPR006175
- InterPro:   IPR006056
- InterPro:   IPR019897 [H]

Pfam domain/function: PF01042 Ribonuc_L-PSP [H]

EC number: NA

Molecular weight: Translated: 17514; Mature: 17383

Theoretical pI: Translated: 4.87; Mature: 4.87

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
1.9 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
1.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSLEAGAGAPLARYAAWRRAGDFIFLSGIIPVNPLTGTIVNGFQDVPEPVRELLGATGEF
CCCCCCCCCCHHHHHHHHHCCCEEEEECCCCCCCCHHHHHHHHHCCCHHHHHHHCCCCCC
STDAKQGPILAQSWYVLESIRRTVASAGGQMSDVIKLVQYFRNLDHFPYYSRVRKLFYPD
CCCCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHCCCC
QPPVSTVVQVSEMLPDATVLIEVEATVWLPPSFNSEAPR
CCCHHHHHHHHHHCCCCEEEEEEEEEEEECCCCCCCCCC
>Mature Secondary Structure 
SLEAGAGAPLARYAAWRRAGDFIFLSGIIPVNPLTGTIVNGFQDVPEPVRELLGATGEF
CCCCCCCCCHHHHHHHHHCCCEEEEECCCCCCCCHHHHHHHHHCCCHHHHHHHCCCCCC
STDAKQGPILAQSWYVLESIRRTVASAGGQMSDVIKLVQYFRNLDHFPYYSRVRKLFYPD
CCCCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHCCCC
QPPVSTVVQVSEMLPDATVLIEVEATVWLPPSFNSEAPR
CCCHHHHHHHHHHCCCCEEEEEEEEEEEECCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9679194 [H]