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The map label for this gene is yliD [C]

Identifier: 238895065

GI number: 238895065

Start: 2947918

End: 2948868

Strand: Direct

Name: yliD [C]

Synonym: KP1_3097

Alternate gene names: 238895065

Gene position: 2947918-2948868 (Clockwise)

Preceding gene: 238895064

Following gene: 238895066

Centisome position: 56.17

GC content: 63.93

Gene sequence:

>951_bases
ATGATGATCCTGTCTTACTTAGCTTCCCGTCGCCGCCAGCGGCAGGCGGCTATCCCGGCGCTGGCGCACATTACCCCCTC
TCCCTGGCGCCAGGGGTGGCGACAGCTGCGCCGTAACCGGCTGGCCATGTTCTGCCTGCTCCTGCTGGCGGTGATGGCGG
TGTGGTGCGTGCTGGGGCCCGTCTGGTCGCCGTGGAGTGATGATGCCACCGACGCCCTGAGCATCAACCAGCCGCCCGGG
GCGGAACACTGGCTGGGGACCGATTTCCTCGGTCGCGATGTCTACACCCGCCTGCTGCTGGCCGGGCGCATCTCGCTGAT
TATCGGCCTGCTGACCATGGTGATGTCGGTGTGCCTCGGCTACCTGCTCGGCGCCCTCTCGGGTTACGTCGGCGGGTTAA
CCGACAAACTGATCATGCGCGTGGCCGACCTGGTGATGACTATCCCCGGGTTACCGCTATTGATCGTCGCCGGGGCGATG
CTTTCTGAGCTCGATTTTTCGCCGGACTCGCGCATTTATATGGTGGTGGTGATGCTCAGCCTGCTGGAGTGGCCCCGACT
GGCGCGGCTGGTGCGCGGGCAATGTCTCTCCCTGCGCGAACGCGATTTTATGCTGGCCACCCAGGTGCTGGGCCTGTCGG
CGCGTCGCCGGCTGTTTGGCCACCTGCTGCCGAATACCATTCCGATTCTGGTGGTGATGGCGACCATGGCCGTCGCCAAC
GCCATTCTCAGTGAATCCGCGCTGAGCTATCTCGGCCTCGGCGTGGTGCCGCCGACGCCGTCGTGGGGCAATATGATGGA
TGCCGCTAACAGTCTGATCGATTTCCAGCGTCGCCCCTGGCTGTGGATGCCGCCGGGCATCGCCATCTTTATCACCGTGA
TCGCCATCAACGTGCTGGGCGATGGCCTGCGCGACGCCATGGATCCCAATATGAAACCGAGGCTGAAATGA

Upstream 100 bases:

>100_bases
TGATGGGGTTTACCCTGTTTCTGGCGGTGCTGACGATCGTCGGGAATCTGCTCGCCGACGTGCTGTACGCCTGGGCCGAT
CCGCGTATTCGGGTGAGGTC

Downstream 100 bases:

>100_bases
CCACGCCGTTAGTCTCCTTTAATCATCTCTCCGTCTCTTTCGCCGGCGAACGCTCTCGCGTGCGCGCGGTGCAGGAGGTC
TCTTTCACCATTCAGGCCGG

Product: oligopeptide ABC transport system permease component

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 316; Mature: 316

Protein sequence:

>316_residues
MMILSYLASRRRQRQAAIPALAHITPSPWRQGWRQLRRNRLAMFCLLLLAVMAVWCVLGPVWSPWSDDATDALSINQPPG
AEHWLGTDFLGRDVYTRLLLAGRISLIIGLLTMVMSVCLGYLLGALSGYVGGLTDKLIMRVADLVMTIPGLPLLIVAGAM
LSELDFSPDSRIYMVVVMLSLLEWPRLARLVRGQCLSLRERDFMLATQVLGLSARRRLFGHLLPNTIPILVVMATMAVAN
AILSESALSYLGLGVVPPTPSWGNMMDAANSLIDFQRRPWLWMPPGIAIFITVIAINVLGDGLRDAMDPNMKPRLK

Sequences:

>Translated_316_residues
MMILSYLASRRRQRQAAIPALAHITPSPWRQGWRQLRRNRLAMFCLLLLAVMAVWCVLGPVWSPWSDDATDALSINQPPG
AEHWLGTDFLGRDVYTRLLLAGRISLIIGLLTMVMSVCLGYLLGALSGYVGGLTDKLIMRVADLVMTIPGLPLLIVAGAM
LSELDFSPDSRIYMVVVMLSLLEWPRLARLVRGQCLSLRERDFMLATQVLGLSARRRLFGHLLPNTIPILVVMATMAVAN
AILSESALSYLGLGVVPPTPSWGNMMDAANSLIDFQRRPWLWMPPGIAIFITVIAINVLGDGLRDAMDPNMKPRLK
>Mature_316_residues
MMILSYLASRRRQRQAAIPALAHITPSPWRQGWRQLRRNRLAMFCLLLLAVMAVWCVLGPVWSPWSDDATDALSINQPPG
AEHWLGTDFLGRDVYTRLLLAGRISLIIGLLTMVMSVCLGYLLGALSGYVGGLTDKLIMRVADLVMTIPGLPLLIVAGAM
LSELDFSPDSRIYMVVVMLSLLEWPRLARLVRGQCLSLRERDFMLATQVLGLSARRRLFGHLLPNTIPILVVMATMAVAN
AILSESALSYLGLGVVPPTPSWGNMMDAANSLIDFQRRPWLWMPPGIAIFITVIAINVLGDGLRDAMDPNMKPRLK

Specific function: Probably part of an ABC transporter complex that could be involved in peptide import. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG1173

COG function: function code EP; ABC-type dipeptide/oligopeptide/nickel transport systems, permease components

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1787054, Length=305, Percent_Identity=37.3770491803279, Blast_Score=211, Evalue=5e-56,
Organism=Escherichia coli, GI1787498, Length=287, Percent_Identity=36.2369337979094, Blast_Score=166, Evalue=2e-42,
Organism=Escherichia coli, GI1789889, Length=250, Percent_Identity=38, Blast_Score=160, Evalue=1e-40,
Organism=Escherichia coli, GI1787760, Length=266, Percent_Identity=33.8345864661654, Blast_Score=155, Evalue=3e-39,
Organism=Escherichia coli, GI1789964, Length=300, Percent_Identity=36.3333333333333, Blast_Score=153, Evalue=1e-38,
Organism=Escherichia coli, GI1787549, Length=290, Percent_Identity=33.448275862069, Blast_Score=120, Evalue=1e-28,
Organism=Escherichia coli, GI1788505, Length=258, Percent_Identity=30.2325581395349, Blast_Score=114, Evalue=1e-26,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 34984; Mature: 34984

Theoretical pI: Translated: 10.20; Mature: 10.20

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
6.0 %Met     (Translated Protein)
7.3 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
6.0 %Met     (Mature Protein)
7.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MMILSYLASRRRQRQAAIPALAHITPSPWRQGWRQLRRNRLAMFCLLLLAVMAVWCVLGP
CHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
VWSPWSDDATDALSINQPPGAEHWLGTDFLGRDVYTRLLLAGRISLIIGLLTMVMSVCLG
CCCCCCCCCCCCEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
YLLGALSGYVGGLTDKLIMRVADLVMTIPGLPLLIVAGAMLSELDFSPDSRIYMVVVMLS
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHH
LLEWPRLARLVRGQCLSLRERDFMLATQVLGLSARRRLFGHLLPNTIPILVVMATMAVAN
HHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH
AILSESALSYLGLGVVPPTPSWGNMMDAANSLIDFQRRPWLWMPPGIAIFITVIAINVLG
HHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEECCCHHHHHHHHHHHHHHH
DGLRDAMDPNMKPRLK
HHHHHHCCCCCCCCCC
>Mature Secondary Structure
MMILSYLASRRRQRQAAIPALAHITPSPWRQGWRQLRRNRLAMFCLLLLAVMAVWCVLGP
CHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
VWSPWSDDATDALSINQPPGAEHWLGTDFLGRDVYTRLLLAGRISLIIGLLTMVMSVCLG
CCCCCCCCCCCCEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
YLLGALSGYVGGLTDKLIMRVADLVMTIPGLPLLIVAGAMLSELDFSPDSRIYMVVVMLS
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHH
LLEWPRLARLVRGQCLSLRERDFMLATQVLGLSARRRLFGHLLPNTIPILVVMATMAVAN
HHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH
AILSESALSYLGLGVVPPTPSWGNMMDAANSLIDFQRRPWLWMPPGIAIFITVIAINVLG
HHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEECCCHHHHHHHHHHHHHHH
DGLRDAMDPNMKPRLK
HHHHHHCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA