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The map label for this gene is ykgD [C]

Identifier: 238895050

GI number: 238895050

Start: 2935625

End: 2936551

Strand: Direct

Name: ykgD [C]

Synonym: KP1_3082

Alternate gene names: 238895050

Gene position: 2935625-2936551 (Clockwise)

Preceding gene: 238895046

Following gene: 238895052

Centisome position: 55.93

GC content: 63.32

Gene sequence:

>927_bases
ATGAGCGATCCGCTGGCGGAGGTCATCGCGATGTTAAATCTCAGAGCGGTGCTGACCAAAACCATCGAGGGGGCGGGAGA
CTGGCGAGTCCGGCGCTCGGATCAGGGGTTGTCATTTTATGGCGTCGTGCTGGAAGGCGGCTGTCGGCTGGAAATTGACC
AGCATGAGCCGCAGATCCTGCGCGCTGGGGATTTTATTCTGATCCCGGCGGCGTACCGCTTCTCGCTAACCAGCCTGACC
CCGCCCCCTTCACCGGCGCTGGAAACCATCCCGGTGCAACTGGCGGAGGGACACTTTCGGCTGGGCGCCCTCGACCAGCC
TGCGCAGATGCAGGCGCTGATTGGCCACTGCGCTTCCGGTTCAACGAACGCCAGCCTGCTGGCCTCGCTGTTGCCAGCCT
TTGTGGTGGTCCGCAATCAACCGCGGCTGGCCACCTTTGTCGGGCTGCTGAAAGAGGAAGCGCAGGCGGATCGCGCGGGC
AAATCTTTCGTTCTGGCGAGGATGGTTGAGCTGCTTTTTATCGAGGCCATCCGTTCCTCCGGCACGCTCGCGACCCCCGG
TCTGATGCGCGGGCTGAGCGACCCGCGGGTCGCCCAGGCAATCCGTCTGCTGCATCAGGCCCCCGCCAGACGCTGGACGG
TCAACGCCCTGGCCGCCGACTGCGCGCTGTCTCGCTCGACGTTATTTGAACGCTTTACCGACCTGACCGGGATGACCCCG
ATGGGCTATCTGTTAGGCTGGCGAATGACCCTGGCCATGCAGTGGCTGAGCGAGACGGGCATCAGCATTGCGGATATCGC
CGAGCGCATCGGCTATGGCTCGGCCAGCGCGTTCAGCGTAGCTTTTACCCGTTATACCGGGATATCGCCGGGCAAATATG
CCCGCCAGCGGGCGGCGCTAAATGTCTCCCGACCAGCTCTGACTTAA

Upstream 100 bases:

>100_bases
ATATCTCTGTCTCCGAATGGCTTCTTCCTTTTGATCATAGACAGGCCGTGCCGGACGATATAGGGTCAATAATCCATCAT
TCTTTAGCAGGAGTCCGGAA

Downstream 100 bases:

>100_bases
CCTGCCGCAATCTCCGTCTGCAGCCAGCGCTCAAACATCTGCAGCGCTGGCTCCCCCTCCCCGCCGCCGGGTTTGATCAA
ACAGAAGCGCTTAGCCAGCG

Product: putative AraC-type regulatory protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 308; Mature: 307

Protein sequence:

>308_residues
MSDPLAEVIAMLNLRAVLTKTIEGAGDWRVRRSDQGLSFYGVVLEGGCRLEIDQHEPQILRAGDFILIPAAYRFSLTSLT
PPPSPALETIPVQLAEGHFRLGALDQPAQMQALIGHCASGSTNASLLASLLPAFVVVRNQPRLATFVGLLKEEAQADRAG
KSFVLARMVELLFIEAIRSSGTLATPGLMRGLSDPRVAQAIRLLHQAPARRWTVNALAADCALSRSTLFERFTDLTGMTP
MGYLLGWRMTLAMQWLSETGISIADIAERIGYGSASAFSVAFTRYTGISPGKYARQRAALNVSRPALT

Sequences:

>Translated_308_residues
MSDPLAEVIAMLNLRAVLTKTIEGAGDWRVRRSDQGLSFYGVVLEGGCRLEIDQHEPQILRAGDFILIPAAYRFSLTSLT
PPPSPALETIPVQLAEGHFRLGALDQPAQMQALIGHCASGSTNASLLASLLPAFVVVRNQPRLATFVGLLKEEAQADRAG
KSFVLARMVELLFIEAIRSSGTLATPGLMRGLSDPRVAQAIRLLHQAPARRWTVNALAADCALSRSTLFERFTDLTGMTP
MGYLLGWRMTLAMQWLSETGISIADIAERIGYGSASAFSVAFTRYTGISPGKYARQRAALNVSRPALT
>Mature_307_residues
SDPLAEVIAMLNLRAVLTKTIEGAGDWRVRRSDQGLSFYGVVLEGGCRLEIDQHEPQILRAGDFILIPAAYRFSLTSLTP
PPSPALETIPVQLAEGHFRLGALDQPAQMQALIGHCASGSTNASLLASLLPAFVVVRNQPRLATFVGLLKEEAQADRAGK
SFVLARMVELLFIEAIRSSGTLATPGLMRGLSDPRVAQAIRLLHQAPARRWTVNALAADCALSRSTLFERFTDLTGMTPM
GYLLGWRMTLAMQWLSETGISIADIAERIGYGSASAFSVAFTRYTGISPGKYARQRAALNVSRPALT

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1786496, Length=301, Percent_Identity=24.5847176079734, Blast_Score=82, Evalue=4e-17,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR018062
- InterPro:   IPR018060 [H]

Pfam domain/function: PF00165 HTH_AraC [H]

EC number: NA

Molecular weight: Translated: 33325; Mature: 33194

Theoretical pI: Translated: 9.49; Mature: 9.49

Prosite motif: PS00041 HTH_ARAC_FAMILY_1 ; PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSDPLAEVIAMLNLRAVLTKTIEGAGDWRVRRSDQGLSFYGVVLEGGCRLEIDQHEPQIL
CCCHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCEEEEEEEECCEEEEECCCCCCEE
RAGDFILIPAAYRFSLTSLTPPPSPALETIPVQLAEGHFRLGALDQPAQMQALIGHCASG
ECCCEEEECCHHEEEECCCCCCCCCCHHHHHHHCCCCCEEECCCCCCHHHHHHHHHHCCC
STNASLLASLLPAFVVVRNQPRLATFVGLLKEEAQADRAGKSFVLARMVELLFIEAIRSS
CCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCC
GTLATPGLMRGLSDPRVAQAIRLLHQAPARRWTVNALAADCALSRSTLFERFTDLTGMTP
CCCCCCHHHHCCCCHHHHHHHHHHHHCCCCCEEHHHHHHHHHHHHHHHHHHHHHHCCCCH
MGYLLGWRMTLAMQWLSETGISIADIAERIGYGSASAFSVAFTRYTGISPGKYARQRAAL
HHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCHHHHEEHHHHCCCCCHHHHHHHHHC
NVSRPALT
CCCCCCCC
>Mature Secondary Structure 
SDPLAEVIAMLNLRAVLTKTIEGAGDWRVRRSDQGLSFYGVVLEGGCRLEIDQHEPQIL
CCHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCEEEEEEEECCEEEEECCCCCCEE
RAGDFILIPAAYRFSLTSLTPPPSPALETIPVQLAEGHFRLGALDQPAQMQALIGHCASG
ECCCEEEECCHHEEEECCCCCCCCCCHHHHHHHCCCCCEEECCCCCCHHHHHHHHHHCCC
STNASLLASLLPAFVVVRNQPRLATFVGLLKEEAQADRAGKSFVLARMVELLFIEAIRSS
CCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCC
GTLATPGLMRGLSDPRVAQAIRLLHQAPARRWTVNALAADCALSRSTLFERFTDLTGMTP
CCCCCCHHHHCCCCHHHHHHHHHHHHCCCCCEEHHHHHHHHHHHHHHHHHHHHHHCCCCH
MGYLLGWRMTLAMQWLSETGISIADIAERIGYGSASAFSVAFTRYTGISPGKYARQRAAL
HHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCHHHHEEHHHHCCCCCHHHHHHHHHC
NVSRPALT
CCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1332944 [H]