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The map label for this gene is rnfD [H]

Identifier: 238895010

GI number: 238895010

Start: 2897905

End: 2898957

Strand: Direct

Name: rnfD [H]

Synonym: KP1_3039

Alternate gene names: 238895010

Gene position: 2897905-2898957 (Clockwise)

Preceding gene: 238895009

Following gene: 238895011

Centisome position: 55.21

GC content: 61.35

Gene sequence:

>1053_bases
ATGGTTTTCAGAATCGCAAGCTCCCCCTATACCCATAACCAGCGGCAGACCTCGCGTATTATGCTGCTGGTGCTGCTCGC
CGCTGTGCCTGGCATTGTGGTCCAGACCTGGTTTTTCGGCTGGGGCACCGTACTGCAGATTGTCCTCGCCGCCCTGACGG
CCTGGGCGACCGAAGCCGCTATTCTCAAACTGCGTAAACAGCCTGTTGCTGCCACGCTGAAAGATAATTCCGCCCTGCTC
ACCGGCCTGCTGCTGGCGGTGAGTATTCCGCCACTGGCCCCGTGGTGGATGGTGGTGCTCGGCACTGCCTTTGCCGTAGT
CATTGCCAAGCAGTTGTACGGAGGCCTGGGCCATAACCCCTTCAACCCGGCAATGATCGGCTATGTCGTGCTGCTGATTT
CGTTCCCGGTGCAGATGACCTCCTGGCTGCCTTCCTATGAGATAGCCGCCCATATCCCGGCATTCAGCGACGCGCTGCAG
ATGATCTTCACCGGTCATACCGCCGCCGGAGGCGACATGGCCAGTCTGCGGCTGGGTATCGACGGCGTCAGCCAGGCCAC
CCCGCTGGATACCTTTAAAACCTCCCTGCATGCCGGACATAGCGTTCAGCAGGTGCTGCAATTGCCGGTCTACGGCGGCG
TGCTGGCAGGTCTGGGCTGGCAGTGGGTGAATATCGCCTGGCTGGCAGGCGGCCTTTTCCTGCTGTGGCAGAAGGCGATC
CGCTGGCATATCCCGGTCAGCTTCCTTGTTAGCCTCGGCCTGTGCGCCACCCTCGGCTGGATTTTTTCGCCGCAGAGCCT
GGCCTCACCGCAGATGCATTTGCTCTCCGGGGCGACCATGCTTGGCGCCTTCTTTATCCTGACCGATCCGGTGACGGCCT
CAACAACCAACCGCGGCCGTCTGATCTTTGGCGCCCTCGCTGGCCTGCTGGTCTGGCTCATCCGCAGCTTCGGTGGTTAT
CCGGACGGCGTGGCGTTTGCCGTTCTGCTGGCGAATATTACCGTGCCGCTGATCGATTACTACACGCGCCCGCGCGTATA
TGGCCACCGTTGA

Upstream 100 bases:

>100_bases
AGCCGCAGCCAATGACGACCCGCGCAAAGCGGCCGTCGCCGCGGCTATCGCCCGCGTTCAGGCGCGTAAAGCAACACAGC
AGGCAGTTAACGAGGAATAA

Downstream 100 bases:

>100_bases
GAGAGCAATGATGTTAAAAACGATGCGTAAACACGGCGTCACGCTGGCGCTGTTTGCCGCCGGTTCCACCGGGCTGACGG
CGGCGATCAATGAGCTGACC

Product: electron transport complex protein RnfD

Products: NA

Alternate protein names: Nitrogen fixation protein rnfD [H]

Number of amino acids: Translated: 350; Mature: 350

Protein sequence:

>350_residues
MVFRIASSPYTHNQRQTSRIMLLVLLAAVPGIVVQTWFFGWGTVLQIVLAALTAWATEAAILKLRKQPVAATLKDNSALL
TGLLLAVSIPPLAPWWMVVLGTAFAVVIAKQLYGGLGHNPFNPAMIGYVVLLISFPVQMTSWLPSYEIAAHIPAFSDALQ
MIFTGHTAAGGDMASLRLGIDGVSQATPLDTFKTSLHAGHSVQQVLQLPVYGGVLAGLGWQWVNIAWLAGGLFLLWQKAI
RWHIPVSFLVSLGLCATLGWIFSPQSLASPQMHLLSGATMLGAFFILTDPVTASTTNRGRLIFGALAGLLVWLIRSFGGY
PDGVAFAVLLANITVPLIDYYTRPRVYGHR

Sequences:

>Translated_350_residues
MVFRIASSPYTHNQRQTSRIMLLVLLAAVPGIVVQTWFFGWGTVLQIVLAALTAWATEAAILKLRKQPVAATLKDNSALL
TGLLLAVSIPPLAPWWMVVLGTAFAVVIAKQLYGGLGHNPFNPAMIGYVVLLISFPVQMTSWLPSYEIAAHIPAFSDALQ
MIFTGHTAAGGDMASLRLGIDGVSQATPLDTFKTSLHAGHSVQQVLQLPVYGGVLAGLGWQWVNIAWLAGGLFLLWQKAI
RWHIPVSFLVSLGLCATLGWIFSPQSLASPQMHLLSGATMLGAFFILTDPVTASTTNRGRLIFGALAGLLVWLIRSFGGY
PDGVAFAVLLANITVPLIDYYTRPRVYGHR
>Mature_350_residues
MVFRIASSPYTHNQRQTSRIMLLVLLAAVPGIVVQTWFFGWGTVLQIVLAALTAWATEAAILKLRKQPVAATLKDNSALL
TGLLLAVSIPPLAPWWMVVLGTAFAVVIAKQLYGGLGHNPFNPAMIGYVVLLISFPVQMTSWLPSYEIAAHIPAFSDALQ
MIFTGHTAAGGDMASLRLGIDGVSQATPLDTFKTSLHAGHSVQQVLQLPVYGGVLAGLGWQWVNIAWLAGGLFLLWQKAI
RWHIPVSFLVSLGLCATLGWIFSPQSLASPQMHLLSGATMLGAFFILTDPVTASTTNRGRLIFGALAGLLVWLIRSFGGY
PDGVAFAVLLANITVPLIDYYTRPRVYGHR

Specific function: Required for nitrogen fixation. May be part of a membrane complex functioning as an intermediate in the electron transport to nitrogenase [H]

COG id: COG4658

COG function: function code C; Predicted NADH:ubiquinone oxidoreductase, subunit RnfD

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the nqrB/rnfD family [H]

Homologues:

Organism=Escherichia coli, GI1787917, Length=350, Percent_Identity=84.8571428571428, Blast_Score=609, Evalue=1e-176,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011303
- InterPro:   IPR004338 [H]

Pfam domain/function: PF03116 NQR2_RnfD_RnfE [H]

EC number: NA

Molecular weight: Translated: 37783; Mature: 37783

Theoretical pI: Translated: 10.17; Mature: 10.17

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVFRIASSPYTHNQRQTSRIMLLVLLAAVPGIVVQTWFFGWGTVLQIVLAALTAWATEAA
CEEEEECCCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ILKLRKQPVAATLKDNSALLTGLLLAVSIPPLAPWWMVVLGTAFAVVIAKQLYGGLGHNP
HHHHHCCCCEEEECCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCC
FNPAMIGYVVLLISFPVQMTSWLPSYEIAAHIPAFSDALQMIFTGHTAAGGDMASLRLGI
CCHHHHHHHHHHHHHHHHHHHCCCCHHHHHCCCHHHHHHHHHHCCCCCCCCCCEEEEECC
DGVSQATPLDTFKTSLHAGHSVQQVLQLPVYGGVLAGLGWQWVNIAWLAGGLFLLWQKAI
CCCCCCCCHHHHHHHHHCCHHHHHHHHCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH
RWHIPVSFLVSLGLCATLGWIFSPQSLASPQMHLLSGATMLGAFFILTDPVTASTTNRGR
HHCCCHHHHHHHHHHHHHHHHCCCHHHCCCHHHHHHHHHHHHHHHHEECCCCCCCCCCCC
LIFGALAGLLVWLIRSFGGYPDGVAFAVLLANITVPLIDYYTRPRVYGHR
HHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCC
>Mature Secondary Structure
MVFRIASSPYTHNQRQTSRIMLLVLLAAVPGIVVQTWFFGWGTVLQIVLAALTAWATEAA
CEEEEECCCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ILKLRKQPVAATLKDNSALLTGLLLAVSIPPLAPWWMVVLGTAFAVVIAKQLYGGLGHNP
HHHHHCCCCEEEECCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCC
FNPAMIGYVVLLISFPVQMTSWLPSYEIAAHIPAFSDALQMIFTGHTAAGGDMASLRLGI
CCHHHHHHHHHHHHHHHHHHHCCCCHHHHHCCCHHHHHHHHHHCCCCCCCCCCEEEEECC
DGVSQATPLDTFKTSLHAGHSVQQVLQLPVYGGVLAGLGWQWVNIAWLAGGLFLLWQKAI
CCCCCCCCHHHHHHHHHCCHHHHHHHHCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH
RWHIPVSFLVSLGLCATLGWIFSPQSLASPQMHLLSGATMLGAFFILTDPVTASTTNRGR
HHCCCHHHHHHHHHHHHHHHHCCCHHHCCCHHHHHHHHHHHHHHHHEECCCCCCCCCCCC
LIFGALAGLLVWLIRSFGGYPDGVAFAVLLANITVPLIDYYTRPRVYGHR
HHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA