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The map label for this gene is ydcI [H]

Identifier: 238894991

GI number: 238894991

Start: 2879761

End: 2880684

Strand: Direct

Name: ydcI [H]

Synonym: KP1_3017

Alternate gene names: 238894991

Gene position: 2879761-2880684 (Clockwise)

Preceding gene: 238894990

Following gene: 238894992

Centisome position: 54.87

GC content: 60.39

Gene sequence:

>924_bases
ATGGAAAAAAATGGTCTCTTCAGTCAGCGCATTCGCTTGCGCCATCTACACACCTTCGTGGCCGTCGCTCAACAGGGAAC
GCTGGGGCGCGCGGCTGAAACATTAAATCTGAGCCAGCCAGCACTCTCGAAAACGCTTAACGAGCTAGAACAGCTGACCG
GTACCCGGCTGTTCGAGCGGGGTCGTCTTGGGGCGCAGCTAACCCTGGTCGGCGAACAGTTTCTGACGCATGCCGTTAAG
GTGCTTGACGCCCTTAATTCGGCCGGCCAGGCGCTGAACCGCAAAGAGGGCCTGAATAACGACATCGTGCGCATCGGCGC
GCTGCCCACCGCCGCGCTGGGGATCCTGCCGACGGTGATCGGCCAGTTTCACAAGCAGCAAAAAGATATCACGCTGCAGG
TCGCCACTATGAACAACACCATGCTGCTCGCCGGCTTAAAATCCGGGGAGATCGACATCGGCATTGGACGTATGTCCGAC
CCGGAGCTGATGAGCGGGCTGCATTACGAACTGTTGTTCCTTGAATCCCTGAAGCTGGTGGTTCGCCCGGGACATCCCCT
GCTTCAGGAGACAGTGACCCTTAGTCGGGTGATGGAGTGGCCGGTGGTGGTCTCACCTAAAGGCACCGTGCCGCGGCAAA
ACGCCGAAGCGCTGCTCCAGAGCCAGGGCTGTAAGATGCCCGCCGGCTGCATCGAGACCCTCTCCGCCTCCCTGTCGCGC
CAGCTGACGGTGGATTTTGACTATGTCTGGTTTGTCCCTTCCGGGGCGGTAAAAGACGATCTTCGCCGTGGCGTGCTAAC
CGCCCTGCCAATCGCCACCCAGGGCGCCGGAGAGCCCATCGGCATTTTAACCCGCGTCGATGCGACACTGACCCCGGGTA
CGCAGACGCTGCTCAGCGCTATCCGTAAGTCCATGCCTGCCTGA

Upstream 100 bases:

>100_bases
GTAACCAACTCAAATGTTAATAATATTTTGCTATCTGGTTATCAAATTTAAACAAGTCCGCTTGTCTCTTTCACCGCTGT
GTTTTTAACATCATCTTACT

Downstream 100 bases:

>100_bases
CCCCCCTTTCTCCCCGGCCCGCAACGGCCGGGGAACCTGCAAACGCGCCGACGCCGCTCCCCATGACGTTAGACATATTC
GGCAAAATAATCATTTAGTG

Product: putative LysR-family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 307; Mature: 307

Protein sequence:

>307_residues
MEKNGLFSQRIRLRHLHTFVAVAQQGTLGRAAETLNLSQPALSKTLNELEQLTGTRLFERGRLGAQLTLVGEQFLTHAVK
VLDALNSAGQALNRKEGLNNDIVRIGALPTAALGILPTVIGQFHKQQKDITLQVATMNNTMLLAGLKSGEIDIGIGRMSD
PELMSGLHYELLFLESLKLVVRPGHPLLQETVTLSRVMEWPVVVSPKGTVPRQNAEALLQSQGCKMPAGCIETLSASLSR
QLTVDFDYVWFVPSGAVKDDLRRGVLTALPIATQGAGEPIGILTRVDATLTPGTQTLLSAIRKSMPA

Sequences:

>Translated_307_residues
MEKNGLFSQRIRLRHLHTFVAVAQQGTLGRAAETLNLSQPALSKTLNELEQLTGTRLFERGRLGAQLTLVGEQFLTHAVK
VLDALNSAGQALNRKEGLNNDIVRIGALPTAALGILPTVIGQFHKQQKDITLQVATMNNTMLLAGLKSGEIDIGIGRMSD
PELMSGLHYELLFLESLKLVVRPGHPLLQETVTLSRVMEWPVVVSPKGTVPRQNAEALLQSQGCKMPAGCIETLSASLSR
QLTVDFDYVWFVPSGAVKDDLRRGVLTALPIATQGAGEPIGILTRVDATLTPGTQTLLSAIRKSMPA
>Mature_307_residues
MEKNGLFSQRIRLRHLHTFVAVAQQGTLGRAAETLNLSQPALSKTLNELEQLTGTRLFERGRLGAQLTLVGEQFLTHAVK
VLDALNSAGQALNRKEGLNNDIVRIGALPTAALGILPTVIGQFHKQQKDITLQVATMNNTMLLAGLKSGEIDIGIGRMSD
PELMSGLHYELLFLESLKLVVRPGHPLLQETVTLSRVMEWPVVVSPKGTVPRQNAEALLQSQGCKMPAGCIETLSASLSR
QLTVDFDYVWFVPSGAVKDDLRRGVLTALPIATQGAGEPIGILTRVDATLTPGTQTLLSAIRKSMPA

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI87081904, Length=306, Percent_Identity=83.3333333333333, Blast_Score=533, Evalue=1e-153,
Organism=Escherichia coli, GI1787601, Length=296, Percent_Identity=27.7027027027027, Blast_Score=121, Evalue=6e-29,
Organism=Escherichia coli, GI157672245, Length=227, Percent_Identity=32.15859030837, Blast_Score=97, Evalue=1e-21,
Organism=Escherichia coli, GI1788887, Length=180, Percent_Identity=35, Blast_Score=97, Evalue=1e-21,
Organism=Escherichia coli, GI1787879, Length=195, Percent_Identity=33.3333333333333, Blast_Score=90, Evalue=2e-19,
Organism=Escherichia coli, GI1790262, Length=217, Percent_Identity=30.4147465437788, Blast_Score=80, Evalue=2e-16,
Organism=Escherichia coli, GI1788748, Length=169, Percent_Identity=30.7692307692308, Blast_Score=74, Evalue=1e-14,
Organism=Escherichia coli, GI145693105, Length=195, Percent_Identity=24.6153846153846, Blast_Score=74, Evalue=1e-14,
Organism=Escherichia coli, GI1789204, Length=187, Percent_Identity=29.4117647058824, Blast_Score=66, Evalue=2e-12,
Organism=Escherichia coli, GI2367136, Length=153, Percent_Identity=32.0261437908497, Blast_Score=66, Evalue=3e-12,
Organism=Escherichia coli, GI1790399, Length=301, Percent_Identity=24.5847176079734, Blast_Score=66, Evalue=3e-12,
Organism=Escherichia coli, GI1789506, Length=172, Percent_Identity=25.5813953488372, Blast_Score=62, Evalue=4e-11,
Organism=Escherichia coli, GI1788481, Length=216, Percent_Identity=26.8518518518519, Blast_Score=61, Evalue=9e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 33165; Mature: 33165

Theoretical pI: Translated: 9.61; Mature: 9.61

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEKNGLFSQRIRLRHLHTFVAVAQQGTLGRAAETLNLSQPALSKTLNELEQLTGTRLFER
CCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHC
GRLGAQLTLVGEQFLTHAVKVLDALNSAGQALNRKEGLNNDIVRIGALPTAALGILPTVI
CCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCHHHHHHHHHHHH
GQFHKQQKDITLQVATMNNTMLLAGLKSGEIDIGIGRMSDPELMSGLHYELLFLESLKLV
HHHHHCCCCEEEEEEEECCEEEEEECCCCCEEEEECCCCCHHHHCCCHHHHHHHHHHHHE
VRPGHPLLQETVTLSRVMEWPVVVSPKGTVPRQNAEALLQSQGCKMPAGCIETLSASLSR
ECCCCHHHHHHHHHHHHHHCCEEECCCCCCCCCHHHHHHHHCCCCCCHHHHHHHHHHHCC
QLTVDFDYVWFVPSGAVKDDLRRGVLTALPIATQGAGEPIGILTRVDATLTPGTQTLLSA
EEEEEEEEEEEECCCCHHHHHHHHHHHHCCCCCCCCCCCEEEEEECCCCCCCCHHHHHHH
IRKSMPA
HHHHCCC
>Mature Secondary Structure
MEKNGLFSQRIRLRHLHTFVAVAQQGTLGRAAETLNLSQPALSKTLNELEQLTGTRLFER
CCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHC
GRLGAQLTLVGEQFLTHAVKVLDALNSAGQALNRKEGLNNDIVRIGALPTAALGILPTVI
CCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCHHHHHHHHHHHH
GQFHKQQKDITLQVATMNNTMLLAGLKSGEIDIGIGRMSDPELMSGLHYELLFLESLKLV
HHHHHCCCCEEEEEEEECCEEEEEECCCCCEEEEECCCCCHHHHCCCHHHHHHHHHHHHE
VRPGHPLLQETVTLSRVMEWPVVVSPKGTVPRQNAEALLQSQGCKMPAGCIETLSASLSR
ECCCCHHHHHHHHHHHHHHCCEEECCCCCCCCCHHHHHHHHCCCCCCHHHHHHHHHHHCC
QLTVDFDYVWFVPSGAVKDDLRRGVLTALPIATQGAGEPIGILTRVDATLTPGTQTLLSA
EEEEEEEEEEEECCCCHHHHHHHHHHHHCCCCCCCCCCCEEEEEECCCCCCCCHHHHHHH
IRKSMPA
HHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503 [H]