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The map label for this gene is ydcL [H]

Identifier: 238894980

GI number: 238894980

Start: 2867632

End: 2868300

Strand: Reverse

Name: ydcL [H]

Synonym: KP1_3006

Alternate gene names: 238894980

Gene position: 2868300-2867632 (Counterclockwise)

Preceding gene: 238894981

Following gene: 238894978

Centisome position: 54.65

GC content: 55.16

Gene sequence:

>669_bases
ATGCGTACTCGCGTTTTACTGAAAGTCGCCGCTCTGGCGGGAATATTGGCGTTGACCGGCTGTGCGGCGAAAGTGGCGCA
ACCGAATCAGTATTCGGGCTTCTTAAAAGATTATTCCAGTTTGAAAGAAACGACCTCTGCCTCCGGCAAGCCGGAGCTGC
GCTGGATCGATCCGAACTTCAATCCGGCCAACTATGACAATATCGTTTATCACCCGGTGACCTACTATCCGGTACCGAAG
CCGACCACCCAGGTAGGGGAGAAGGCGCTGCAGGATATTCTTAACTACACCAACAAAGAGCTGAAACAGGCTATTTCCGA
GCGTAAACCGCTGGCCACTACCGCCGGCAAGCGCAGCCTCATCTTCCGCGGGGCGATCACCGGGGTGGACTCCAGCAAAG
AGGGGCTGCAGTTCTATGAAGTGATCCCGGTCGCTATGATTGTCGCCGGCACCCAGGCCGCCACCGGCCATCGTACCATG
GACACCAATCTGTACTTTGAGGCGGAGGTCATTGACGCCAGCACCAATAAGCCGGTCATCAAGGTCGTTCGTAAAGGGGA
AGGCAAAACCCTGGCGAATGAGAATACACCGCTGACCGTCGATACCCTGAAGCAGGTTATCGATGATATGGCGGTCGACG
CCGTTAAATTCGATCCCTCTCAGCGTTAA

Upstream 100 bases:

>100_bases
TAAATCTTCCTTGACGAAGCCCTTTTTTTGTCACAAAACTAGTGGGTCCTATTTGCTATAACGTCTGCCGAAAAAAAACT
GTATTTACAGGGATCTCTCT

Downstream 100 bases:

>100_bases
TCGTGCCAGCGCCGTCTGACGACGGCGCTGTTTTTCTTCAGCCTCCTCAGGCCAGCCTTCGGCGCAGCAATAGCTGTTCC
GGTTTGGCAAACATCACCAG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 222; Mature: 222

Protein sequence:

>222_residues
MRTRVLLKVAALAGILALTGCAAKVAQPNQYSGFLKDYSSLKETTSASGKPELRWIDPNFNPANYDNIVYHPVTYYPVPK
PTTQVGEKALQDILNYTNKELKQAISERKPLATTAGKRSLIFRGAITGVDSSKEGLQFYEVIPVAMIVAGTQAATGHRTM
DTNLYFEAEVIDASTNKPVIKVVRKGEGKTLANENTPLTVDTLKQVIDDMAVDAVKFDPSQR

Sequences:

>Translated_222_residues
MRTRVLLKVAALAGILALTGCAAKVAQPNQYSGFLKDYSSLKETTSASGKPELRWIDPNFNPANYDNIVYHPVTYYPVPK
PTTQVGEKALQDILNYTNKELKQAISERKPLATTAGKRSLIFRGAITGVDSSKEGLQFYEVIPVAMIVAGTQAATGHRTM
DTNLYFEAEVIDASTNKPVIKVVRKGEGKTLANENTPLTVDTLKQVIDDMAVDAVKFDPSQR
>Mature_222_residues
MRTRVLLKVAALAGILALTGCAAKVAQPNQYSGFLKDYSSLKETTSASGKPELRWIDPNFNPANYDNIVYHPVTYYPVPK
PTTQVGEKALQDILNYTNKELKQAISERKPLATTAGKRSLIFRGAITGVDSSKEGLQFYEVIPVAMIVAGTQAATGHRTM
DTNLYFEAEVIDASTNKPVIKVVRKGEGKTLANENTPLTVDTLKQVIDDMAVDAVKFDPSQR

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell membrane; Lipid-anchor (Probable) [H]

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1787701, Length=222, Percent_Identity=70.7207207207207, Blast_Score=345, Evalue=1e-96,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR021747 [H]

Pfam domain/function: PF11769 DUF3313 [H]

EC number: NA

Molecular weight: Translated: 24278; Mature: 24278

Theoretical pI: Translated: 9.41; Mature: 9.41

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRTRVLLKVAALAGILALTGCAAKVAQPNQYSGFLKDYSSLKETTSASGKPELRWIDPNF
CCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCCEEEECCCC
NPANYDNIVYHPVTYYPVPKPTTQVGEKALQDILNYTNKELKQAISERKPLATTAGKRSL
CCCCCCCEEECCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEE
IFRGAITGVDSSKEGLQFYEVIPVAMIVAGTQAATGHRTMDTNLYFEAEVIDASTNKPVI
EEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCEEECCCEEEEEEEEECCCCCCCE
KVVRKGEGKTLANENTPLTVDTLKQVIDDMAVDAVKFDPSQR
EEEECCCCCEECCCCCCEEHHHHHHHHHHHHHHHEECCCCCC
>Mature Secondary Structure
MRTRVLLKVAALAGILALTGCAAKVAQPNQYSGFLKDYSSLKETTSASGKPELRWIDPNF
CCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCCEEEECCCC
NPANYDNIVYHPVTYYPVPKPTTQVGEKALQDILNYTNKELKQAISERKPLATTAGKRSL
CCCCCCCEEECCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEE
IFRGAITGVDSSKEGLQFYEVIPVAMIVAGTQAATGHRTMDTNLYFEAEVIDASTNKPVI
EEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCEEECCCEEEEEEEEECCCCCCCE
KVVRKGEGKTLANENTPLTVDTLKQVIDDMAVDAVKFDPSQR
EEEECCCCCEECCCCCCEEHHHHHHHHHHHHHHHEECCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]