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The map label for this gene is ydcS [H]

Identifier: 238894967

GI number: 238894967

Start: 2854714

End: 2855859

Strand: Reverse

Name: ydcS [H]

Synonym: KP1_2993

Alternate gene names: 238894967

Gene position: 2855859-2854714 (Counterclockwise)

Preceding gene: 238894968

Following gene: 238894966

Centisome position: 54.41

GC content: 59.16

Gene sequence:

>1146_bases
ATGAGCAAAAAAATTGCCCGTTGCAGCCTTTATGTGCTGGGTATGGCTTGTTTGACCGTTCAGGCGGCAGAGCCGCTCAC
CTCGCTGGATAAACCGGAAGGGCGGCTCGATATTATTGCCTGGCCGGGATATATCGAACGCGGTCAGACCGACAAACAGT
ACGACTGGGTGAGTCAGTTCGAAAAGGACACCGGTTGCCAGGTTAATGTCAAAACCGCTGCCACCTCTGACGAGATGGTC
AGTCTGATGGCCAAAGGCGGCTACGATCTGGTCACCGCCTCGGGTGATGCTTCGCTGCGCCTGATCATGGGCAAACGCGT
GCAGCCGATCAACACGGCGCTGATTGCCGGCTGGGGCTCCCTTGATCCGCGTATTGCGAAGGGGGCGTGGTTTAACGTCG
GCGGTAAAGTCTATGGCACGCCGTATCAGTGGGGGCCGAACCTGCTGATGTACAACACCCGCGTATTCCCGACGCCGCCG
GACAGCTGGCGCGTGGTGTTCGTCAAGCAGGATCTACCGGATGGTAAAACCAACCAGGGGCGGGTGCAGGCCTATGATGG
CCCGATCTATATCGCCGACGCCGCGCTGTTTGTCAAAGCCACCCAGCCGCAGCTGGGGATCGAAGACCCCTATCAACTGA
CCGAAACCCAGTACAACGCGGTGCTGAAAGTCCTGCGCGACCAGCAACCGCTGATCCATCGCTACTGGCATGACGCCACC
GTACAGATGAACGACTTCAAAAACGAAGGGGTAGCCGCCTCCAGTTCGTGGCCCTATCAAGCCAACGGCCTGAAGACGGA
AGGCCAGCCGGTCGCCACCGTGTTCCCGAAGGAGGGGGTAACCGGCTGGGCGGATACCACCATGCTGCACAGCGAGGCGA
AGCACCCGGTCTGCGCCTATAAATGGATGAACTGGTCGCTCACGCCGAAGGTGCAGGGCGATGTGGCGGCATGGTTCGGT
TCGCTGCCGGTGGTGCCTGAGGGCTGTAAAGCCAGCGCGCTGCTCGGTGATAAAGGCTGTGAGACCAACGGCTATGAGCA
GTTTAACCGCATTCACTTCTGGAAAACGCCGGTTGCGGAAGGCGGGAAATACGTGCCCTATAGCCGCTGGACTCAGGACT
ATATTGCGATAATGGGCGGCCGCTAA

Upstream 100 bases:

>100_bases
AAATTCCCCTGGGGGCGTTAATCCGCTGACTACCCTTATTTCAGGAGATATTTTTACGGCACGGCTGCCGCTAATTCCTT
TGTGACAGGAGTAACACCTG

Downstream 100 bases:

>100_bases
GGATCGGAGGCAAACAATGACGTACGCGGTCGAGTTCCAGAATGTATCGCGCCTGTATGGCGATGTGCGGGCGGTGGATG
GGGTTAGCATTGGCATACGC

Product: putative transport system periplasmic binding component

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 381; Mature: 380

Protein sequence:

>381_residues
MSKKIARCSLYVLGMACLTVQAAEPLTSLDKPEGRLDIIAWPGYIERGQTDKQYDWVSQFEKDTGCQVNVKTAATSDEMV
SLMAKGGYDLVTASGDASLRLIMGKRVQPINTALIAGWGSLDPRIAKGAWFNVGGKVYGTPYQWGPNLLMYNTRVFPTPP
DSWRVVFVKQDLPDGKTNQGRVQAYDGPIYIADAALFVKATQPQLGIEDPYQLTETQYNAVLKVLRDQQPLIHRYWHDAT
VQMNDFKNEGVAASSSWPYQANGLKTEGQPVATVFPKEGVTGWADTTMLHSEAKHPVCAYKWMNWSLTPKVQGDVAAWFG
SLPVVPEGCKASALLGDKGCETNGYEQFNRIHFWKTPVAEGGKYVPYSRWTQDYIAIMGGR

Sequences:

>Translated_381_residues
MSKKIARCSLYVLGMACLTVQAAEPLTSLDKPEGRLDIIAWPGYIERGQTDKQYDWVSQFEKDTGCQVNVKTAATSDEMV
SLMAKGGYDLVTASGDASLRLIMGKRVQPINTALIAGWGSLDPRIAKGAWFNVGGKVYGTPYQWGPNLLMYNTRVFPTPP
DSWRVVFVKQDLPDGKTNQGRVQAYDGPIYIADAALFVKATQPQLGIEDPYQLTETQYNAVLKVLRDQQPLIHRYWHDAT
VQMNDFKNEGVAASSSWPYQANGLKTEGQPVATVFPKEGVTGWADTTMLHSEAKHPVCAYKWMNWSLTPKVQGDVAAWFG
SLPVVPEGCKASALLGDKGCETNGYEQFNRIHFWKTPVAEGGKYVPYSRWTQDYIAIMGGR
>Mature_380_residues
SKKIARCSLYVLGMACLTVQAAEPLTSLDKPEGRLDIIAWPGYIERGQTDKQYDWVSQFEKDTGCQVNVKTAATSDEMVS
LMAKGGYDLVTASGDASLRLIMGKRVQPINTALIAGWGSLDPRIAKGAWFNVGGKVYGTPYQWGPNLLMYNTRVFPTPPD
SWRVVFVKQDLPDGKTNQGRVQAYDGPIYIADAALFVKATQPQLGIEDPYQLTETQYNAVLKVLRDQQPLIHRYWHDATV
QMNDFKNEGVAASSSWPYQANGLKTEGQPVATVFPKEGVTGWADTTMLHSEAKHPVCAYKWMNWSLTPKVQGDVAAWFGS
LPVVPEGCKASALLGDKGCETNGYEQFNRIHFWKTPVAEGGKYVPYSRWTQDYIAIMGGR

Specific function: Probably part of the binding-protein-dependent transport system ydcSTUV [H]

COG id: COG0687

COG function: function code E; Spermidine/putrescine-binding periplasmic protein

Gene ontology:

Cell location: Periplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the bacterial solute-binding protein potD/potF family [H]

Homologues:

Organism=Escherichia coli, GI1787711, Length=381, Percent_Identity=86.0892388451444, Blast_Score=694, Evalue=0.0,
Organism=Escherichia coli, GI1787078, Length=304, Percent_Identity=26.3157894736842, Blast_Score=76, Evalue=3e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006059
- InterPro:   IPR001188 [H]

Pfam domain/function: PF01547 SBP_bac_1 [H]

EC number: NA

Molecular weight: Translated: 42250; Mature: 42119

Theoretical pI: Translated: 7.80; Mature: 7.80

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSKKIARCSLYVLGMACLTVQAAEPLTSLDKPEGRLDIIAWPGYIERGQTDKQYDWVSQF
CCCCHHHHHHHHHHHHHHHEECCCCHHHCCCCCCCEEEEECCCHHCCCCCCCHHHHHHHH
EKDTGCQVNVKTAATSDEMVSLMAKGGYDLVTASGDASLRLIMGKRVQPINTALIAGWGS
CCCCCCEEEEEECCCHHHHHHHHHCCCEEEEEECCCCEEEEEECCCCCCCCEEEEECCCC
LDPRIAKGAWFNVGGKVYGTPYQWGPNLLMYNTRVFPTPPDSWRVVFVKQDLPDGKTNQG
CCCCCCCCCEEECCCEEECCCCCCCCCEEEEECEECCCCCCCEEEEEEEECCCCCCCCCC
RVQAYDGPIYIADAALFVKATQPQLGIEDPYQLTETQYNAVLKVLRDQQPLIHRYWHDAT
EEEEECCCEEEEEEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHCCCCE
VQMNDFKNEGVAASSSWPYQANGLKTEGQPVATVFPKEGVTGWADTTMLHSEAKHPVCAY
EEECCCCCCCEECCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCHHHEEHHCCCCCEEEE
KWMNWSLTPKVQGDVAAWFGSLPVVPEGCKASALLGDKGCETNGYEQFNRIHFWKTPVAE
EECCEEECCCCCCCHHHHHCCCCCCCCCCCCEEEECCCCCCCCCHHHHCEEEEEECCCCC
GGKYVPYSRWTQDYIAIMGGR
CCCCCCCCCCCCCEEEEECCC
>Mature Secondary Structure 
SKKIARCSLYVLGMACLTVQAAEPLTSLDKPEGRLDIIAWPGYIERGQTDKQYDWVSQF
CCCHHHHHHHHHHHHHHHEECCCCHHHCCCCCCCEEEEECCCHHCCCCCCCHHHHHHHH
EKDTGCQVNVKTAATSDEMVSLMAKGGYDLVTASGDASLRLIMGKRVQPINTALIAGWGS
CCCCCCEEEEEECCCHHHHHHHHHCCCEEEEEECCCCEEEEEECCCCCCCCEEEEECCCC
LDPRIAKGAWFNVGGKVYGTPYQWGPNLLMYNTRVFPTPPDSWRVVFVKQDLPDGKTNQG
CCCCCCCCCEEECCCEEECCCCCCCCCEEEEECEECCCCCCCEEEEEEEECCCCCCCCCC
RVQAYDGPIYIADAALFVKATQPQLGIEDPYQLTETQYNAVLKVLRDQQPLIHRYWHDAT
EEEEECCCEEEEEEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHCCCCE
VQMNDFKNEGVAASSSWPYQANGLKTEGQPVATVFPKEGVTGWADTTMLHSEAKHPVCAY
EEECCCCCCCEECCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCHHHEEHHCCCCCEEEE
KWMNWSLTPKVQGDVAAWFGSLPVVPEGCKASALLGDKGCETNGYEQFNRIHFWKTPVAE
EECCEEECCCCCCCHHHHHCCCCCCCCCCCCEEEECCCCCCCCCHHHHCEEEEEECCCCC
GGKYVPYSRWTQDYIAIMGGR
CCCCCCCCCCCCCEEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]