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The map label for this gene is oxyR [H]

Identifier: 238894868

GI number: 238894868

Start: 2755545

End: 2756426

Strand: Reverse

Name: oxyR [H]

Synonym: KP1_2885

Alternate gene names: 238894868

Gene position: 2756426-2755545 (Counterclockwise)

Preceding gene: 238894869

Following gene: 238894867

Centisome position: 52.52

GC content: 57.48

Gene sequence:

>882_bases
ATGGATATTAAGCAACTCAAGTATTTGATCGCGCTCGATCAGACGCGCCATTTTGGCCAGGCGGCGGCGGCCTGTCATAT
TACCCAGCCGACGCTCTCCATGCGCATTCGTAACCTGGAAGAGGAGCTGAACCTGACGCTGATCCAGCGCGGCCAACGCT
TTGAAGGTTTTACCCCAGAGGGAGAGCGGATCCTGGCCTGGGCGCGGGCGGTGCTGGCCGCTCATGACGGCCTGGCGGCA
GAGGCGGCCATCTGTCGCGGGCAGATGGTCGGCCAGCTGCGGGTCGGTATGGTGCCGCTGGCGAGCCTCAATCCGATGCA
GTTGATTAAACCCCTGGCGGAGAAATATCCGGCGCTGCAGTTCAGCCTGTTGTCGATGACCTCGGAGCAGATTATCGATG
GCGTCAGCCGTAATCAGCTGGATCTGGGGATCTGTTATCTGCAGCATCTGGATGAAGGTCAGTTCAAGATTGCTCGCTTG
CCGCAAACCCGGATGGGACTGCTGCACGATAAACGCCATTTCGACTTCAGCGCCGGGACGCCGGGATGGGAGACGCTGGC
GACGCTGCCCCTCGGCTTTCTGACCAAGGGGATGTATTACCGGGAATCGATTGAAATCAGCTTTAAGGCCAAAGGGCTAA
CGCCAAGGTATGTCTTTGAAAGTGATTCGACGTTTCAGATTATCCAGGCGGTGCAGGCGGGGATCTGCTGCGCCATTATG
CCGCTTAACAACGGCCTCGAAGCGCTAAGCGATAATCTTGAAATTCTGCCGATCGCCGAAACCCATGTTGATTCACAGCT
GGCGCTGATTATGCGCCAGCAGGAACCAGTCTCGACCCTGGCGGAAAAATGCTTCACCGAGGCGCAGGGGATATTTGGCT
GA

Upstream 100 bases:

>100_bases
TCGTGGTGTCCTCGCTTGAATTTATCGCTAGCGAAACTAACATTCTGGTAACCTGTGCGCGGCCCCGGGGGTGAACGGCG
GGGTTCAAACGGGAAAGAGA

Downstream 100 bases:

>100_bases
GGCCGGGCCGCCGACCTGGCGGCTTGTCACTAAAATGCCTAAACGCCCCTCTGATGGGAGAGTGTCAATATAGCCCCGGT
GATGCTGGACCGTTGGTAAA

Product: putative LysR family regulatory protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 293; Mature: 293

Protein sequence:

>293_residues
MDIKQLKYLIALDQTRHFGQAAAACHITQPTLSMRIRNLEEELNLTLIQRGQRFEGFTPEGERILAWARAVLAAHDGLAA
EAAICRGQMVGQLRVGMVPLASLNPMQLIKPLAEKYPALQFSLLSMTSEQIIDGVSRNQLDLGICYLQHLDEGQFKIARL
PQTRMGLLHDKRHFDFSAGTPGWETLATLPLGFLTKGMYYRESIEISFKAKGLTPRYVFESDSTFQIIQAVQAGICCAIM
PLNNGLEALSDNLEILPIAETHVDSQLALIMRQQEPVSTLAEKCFTEAQGIFG

Sequences:

>Translated_293_residues
MDIKQLKYLIALDQTRHFGQAAAACHITQPTLSMRIRNLEEELNLTLIQRGQRFEGFTPEGERILAWARAVLAAHDGLAA
EAAICRGQMVGQLRVGMVPLASLNPMQLIKPLAEKYPALQFSLLSMTSEQIIDGVSRNQLDLGICYLQHLDEGQFKIARL
PQTRMGLLHDKRHFDFSAGTPGWETLATLPLGFLTKGMYYRESIEISFKAKGLTPRYVFESDSTFQIIQAVQAGICCAIM
PLNNGLEALSDNLEILPIAETHVDSQLALIMRQQEPVSTLAEKCFTEAQGIFG
>Mature_293_residues
MDIKQLKYLIALDQTRHFGQAAAACHITQPTLSMRIRNLEEELNLTLIQRGQRFEGFTPEGERILAWARAVLAAHDGLAA
EAAICRGQMVGQLRVGMVPLASLNPMQLIKPLAEKYPALQFSLLSMTSEQIIDGVSRNQLDLGICYLQHLDEGQFKIARL
PQTRMGLLHDKRHFDFSAGTPGWETLATLPLGFLTKGMYYRESIEISFKAKGLTPRYVFESDSTFQIIQAVQAGICCAIM
PLNNGLEALSDNLEILPIAETHVDSQLALIMRQQEPVSTLAEKCFTEAQGIFG

Specific function: Required for the induction of a regulon of hydrogen peroxide inducible genes such as catalase and glutathione- reductase [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1790399, Length=286, Percent_Identity=27.6223776223776, Blast_Score=85, Evalue=4e-18,
Organism=Escherichia coli, GI157672245, Length=292, Percent_Identity=25, Blast_Score=77, Evalue=1e-15,
Organism=Escherichia coli, GI1787879, Length=283, Percent_Identity=27.208480565371, Blast_Score=75, Evalue=3e-15,
Organism=Escherichia coli, GI1788887, Length=167, Percent_Identity=31.1377245508982, Blast_Score=70, Evalue=2e-13,
Organism=Escherichia coli, GI145693105, Length=285, Percent_Identity=22.1052631578947, Blast_Score=65, Evalue=6e-12,
Organism=Escherichia coli, GI1788297, Length=249, Percent_Identity=24.8995983935743, Blast_Score=63, Evalue=2e-11,
Organism=Escherichia coli, GI2367136, Length=257, Percent_Identity=26.0700389105058, Blast_Score=61, Evalue=1e-10,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 32574; Mature: 32574

Theoretical pI: Translated: 6.16; Mature: 6.16

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.0 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
5.5 %Cys+Met (Translated Protein)
2.0 %Cys     (Mature Protein)
3.4 %Met     (Mature Protein)
5.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDIKQLKYLIALDQTRHFGQAAAACHITQPTLSMRIRNLEEELNLTLIQRGQRFEGFTPE
CCHHHHHHHHHHHHHHHHHHHHHEEEECCHHHHHHHHHHHHHHCCHHHHCCCCCCCCCCC
GERILAWARAVLAAHDGLAAEAAICRGQMVGQLRVGMVPLASLNPMQLIKPLAEKYPALQ
CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCEEECCCCCHHHHHHHHHHHCCCHH
FSLLSMTSEQIIDGVSRNQLDLGICYLQHLDEGQFKIARLPQTRMGLLHDKRHFDFSAGT
HHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCCEEEEECCHHHHHHHHCCCCCCCCCCC
PGWETLATLPLGFLTKGMYYRESIEISFKAKGLTPRYVFESDSTFQIIQAVQAGICCAIM
CCHHHHHHHHHHHHHCCCEEEEEEEEEEEECCCCCEEEECCCCHHHHHHHHHCCCEEEEE
PLNNGLEALSDNLEILPIAETHVDSQLALIMRQQEPVSTLAEKCFTEAQGIFG
ECCCCHHHHHCCCEEEEEHHHHCCHHHHHHHHCCCHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure
MDIKQLKYLIALDQTRHFGQAAAACHITQPTLSMRIRNLEEELNLTLIQRGQRFEGFTPE
CCHHHHHHHHHHHHHHHHHHHHHEEEECCHHHHHHHHHHHHHHCCHHHHCCCCCCCCCCC
GERILAWARAVLAAHDGLAAEAAICRGQMVGQLRVGMVPLASLNPMQLIKPLAEKYPALQ
CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCEEECCCCCHHHHHHHHHHHCCCHH
FSLLSMTSEQIIDGVSRNQLDLGICYLQHLDEGQFKIARLPQTRMGLLHDKRHFDFSAGT
HHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCCEEEEECCHHHHHHHHCCCCCCCCCCC
PGWETLATLPLGFLTKGMYYRESIEISFKAKGLTPRYVFESDSTFQIIQAVQAGICCAIM
CCHHHHHHHHHHHHHCCCEEEEEEEEEEEECCCCCEEEECCCCHHHHHHHHHCCCEEEEE
PLNNGLEALSDNLEILPIAETHVDSQLALIMRQQEPVSTLAEKCFTEAQGIFG
ECCCCHHHHHCCCEEEEEHHHHCCHHHHHHHHCCCHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7542800; 8890216 [H]