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The map label for this gene is ygiP [C]

Identifier: 238894854

GI number: 238894854

Start: 2738763

End: 2739695

Strand: Direct

Name: ygiP [C]

Synonym: KP1_2870

Alternate gene names: 238894854

Gene position: 2738763-2739695 (Clockwise)

Preceding gene: 238894849

Following gene: 238894855

Centisome position: 52.18

GC content: 60.45

Gene sequence:

>933_bases
ATGGCCGATGCCAGCAGCGTCGATTTTCGCGCCCTTCAGCTTTTCATCGCGGTTTACGATAACCAGAGTTTTTCCGTAGT
GGCCCGCCGCGAAGGGGTCTCTCCCTCGCTGATCTCGCGAACCATCCAGCAGCTGGAAGATGCCCTCGGGCAGCAGCTGT
TCTACCGCAACACCCGTGCCGTGGTACCGACCGAAGCAGGACGCCTTTTCGCAGCGTCCGCCCGGGAACTGCTGGGACAG
TACGCCGACGCGCAACGGGCGTTACAGGATCGGGCACAGGTCCCCGGCGGACTGGTGCGGATCAATGCGCCGGTCTATTT
TGGTCAGCGGCATATCGCCCCCTGGCTTCCGGAACTGGCGGCCCGGCATCCCAAACTGCAGTTTGACCTGACGCTGACCG
ACGATTTTATCGATCCCCATCGCGATGCGACGGATATCCTTTTTCGCATCAGCAGCCTGCCGGACGCGGGCTATCACGCC
AGAGTGTTTGGCAGCCAGCGCTATTACCTGACCGCCTCCCCGGAGTATGTTTCACGGTACGGCAGCCCGACTTCGCCGGA
GGCATTGCATCAACATCGCACGCTGGTGTATGGCGGTTCGCAGGGAGCCAACCGCTGGCTGTTTCGCCAGCGCGAAGAGG
CATGGGTGCACTATCCGTTGACCCCGCTCATGACCTCGAACAATGCCGATGCCCTGCTCACTTCAGCCATCGGCGGGATG
GGGATCGTGTTATTTCCCGACTGGATGGTCAGCGAGGCGCTGCACAACGGGACATTAGTCACGCTGATGGATCGCTATTC
GGCGGCCATCAGCCACACGCCATCGTATATCGCGGCGATTTATCCTTATACCCGCCATCCCTCTCTCAACGTGCGGACAG
TGATTGACTATTTTGCCGACGTGTTTGGATCGCCGCCCTACTGGCAGCGCTAA

Upstream 100 bases:

>100_bases
TTACTGCGCCTCCTCTGTACAACAGGCGGCTGAGGATAAAACAGCGTGCTGATGCGATAAACGGTATAATGCAGAAAACA
CTATTGCAGGAATTGCACAG

Downstream 100 bases:

>100_bases
TGCGAGATTCGTAGTAAAACTTGTCATATCTCAAACAATTAGCATTCCTTCGCCCAGCTTGACGCGGATCGTTTCCTTTG
CCGCCTCGTTACGGCTATGG

Product: putative LysR-family transcriptional regulator

Products: NA

Alternate protein names: ORF2 [H]

Number of amino acids: Translated: 310; Mature: 309

Protein sequence:

>310_residues
MADASSVDFRALQLFIAVYDNQSFSVVARREGVSPSLISRTIQQLEDALGQQLFYRNTRAVVPTEAGRLFAASARELLGQ
YADAQRALQDRAQVPGGLVRINAPVYFGQRHIAPWLPELAARHPKLQFDLTLTDDFIDPHRDATDILFRISSLPDAGYHA
RVFGSQRYYLTASPEYVSRYGSPTSPEALHQHRTLVYGGSQGANRWLFRQREEAWVHYPLTPLMTSNNADALLTSAIGGM
GIVLFPDWMVSEALHNGTLVTLMDRYSAAISHTPSYIAAIYPYTRHPSLNVRTVIDYFADVFGSPPYWQR

Sequences:

>Translated_310_residues
MADASSVDFRALQLFIAVYDNQSFSVVARREGVSPSLISRTIQQLEDALGQQLFYRNTRAVVPTEAGRLFAASARELLGQ
YADAQRALQDRAQVPGGLVRINAPVYFGQRHIAPWLPELAARHPKLQFDLTLTDDFIDPHRDATDILFRISSLPDAGYHA
RVFGSQRYYLTASPEYVSRYGSPTSPEALHQHRTLVYGGSQGANRWLFRQREEAWVHYPLTPLMTSNNADALLTSAIGGM
GIVLFPDWMVSEALHNGTLVTLMDRYSAAISHTPSYIAAIYPYTRHPSLNVRTVIDYFADVFGSPPYWQR
>Mature_309_residues
ADASSVDFRALQLFIAVYDNQSFSVVARREGVSPSLISRTIQQLEDALGQQLFYRNTRAVVPTEAGRLFAASARELLGQY
ADAQRALQDRAQVPGGLVRINAPVYFGQRHIAPWLPELAARHPKLQFDLTLTDDFIDPHRDATDILFRISSLPDAGYHAR
VFGSQRYYLTASPEYVSRYGSPTSPEALHQHRTLVYGGSQGANRWLFRQREEAWVHYPLTPLMTSNNADALLTSAIGGMG
IVLFPDWMVSEALHNGTLVTLMDRYSAAISHTPSYIAAIYPYTRHPSLNVRTVIDYFADVFGSPPYWQR

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1789440, Length=295, Percent_Identity=30.8474576271186, Blast_Score=132, Evalue=4e-32,
Organism=Escherichia coli, GI145693193, Length=293, Percent_Identity=30.7167235494881, Blast_Score=131, Evalue=7e-32,
Organism=Escherichia coli, GI1786401, Length=296, Percent_Identity=28.0405405405405, Blast_Score=125, Evalue=4e-30,
Organism=Escherichia coli, GI87081978, Length=294, Percent_Identity=28.9115646258503, Blast_Score=106, Evalue=2e-24,
Organism=Escherichia coli, GI1789639, Length=294, Percent_Identity=26.530612244898, Blast_Score=103, Evalue=1e-23,
Organism=Escherichia coli, GI1787589, Length=279, Percent_Identity=29.0322580645161, Blast_Score=101, Evalue=6e-23,
Organism=Escherichia coli, GI1787128, Length=285, Percent_Identity=27.3684210526316, Blast_Score=96, Evalue=3e-21,
Organism=Escherichia coli, GI1790208, Length=128, Percent_Identity=35.15625, Blast_Score=67, Evalue=1e-12,
Organism=Escherichia coli, GI1788706, Length=254, Percent_Identity=23.6220472440945, Blast_Score=67, Evalue=1e-12,
Organism=Escherichia coli, GI1789173, Length=253, Percent_Identity=24.1106719367589, Blast_Score=64, Evalue=1e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 34795; Mature: 34663

Theoretical pI: Translated: 7.42; Mature: 7.42

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
1.6 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
1.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MADASSVDFRALQLFIAVYDNQSFSVVARREGVSPSLISRTIQQLEDALGQQLFYRNTRA
CCCCCCCHHHHHEEEEHEECCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCCE
VVPTEAGRLFAASARELLGQYADAQRALQDRAQVPGGLVRINAPVYFGQRHIAPWLPELA
ECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCEEECCCCCCCHHHHHH
ARHPKLQFDLTLTDDFIDPHRDATDILFRISSLPDAGYHARVFGSQRYYLTASPEYVSRY
CCCCCEEEEEEEECCCCCCCCCHHHHHHHHHCCCCCCCEEEEECCCEEEEECCHHHHHHC
GSPTSPEALHQHRTLVYGGSQGANRWLFRQREEAWVHYPLTPLMTSNNADALLTSAIGGM
CCCCCHHHHHHCCEEEEECCCCCCHHHHHHHCCCEEEECCCEEEECCCCHHHHHHHHCCC
GIVLFPDWMVSEALHNGTLVTLMDRYSAAISHTPSYIAAIYPYTRHPSLNVRTVIDYFAD
EEEECCHHHHHHHHCCCCEEEEHHHHHHHHHCCCCCEEEECCCCCCCCCCHHHHHHHHHH
VFGSPPYWQR
HHCCCCCCCC
>Mature Secondary Structure 
ADASSVDFRALQLFIAVYDNQSFSVVARREGVSPSLISRTIQQLEDALGQQLFYRNTRA
CCCCCCHHHHHEEEEHEECCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCCE
VVPTEAGRLFAASARELLGQYADAQRALQDRAQVPGGLVRINAPVYFGQRHIAPWLPELA
ECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCEEECCCCCCCHHHHHH
ARHPKLQFDLTLTDDFIDPHRDATDILFRISSLPDAGYHARVFGSQRYYLTASPEYVSRY
CCCCCEEEEEEEECCCCCCCCCHHHHHHHHHCCCCCCCEEEEECCCEEEEECCHHHHHHC
GSPTSPEALHQHRTLVYGGSQGANRWLFRQREEAWVHYPLTPLMTSNNADALLTSAIGGM
CCCCCHHHHHHCCEEEEECCCCCCHHHHHHHCCCEEEECCCEEEECCCCHHHHHHHHCCC
GIVLFPDWMVSEALHNGTLVTLMDRYSAAISHTPSYIAAIYPYTRHPSLNVRTVIDYFAD
EEEECCHHHHHHHHCCCCEEEEHHHHHHHHHCCCCCEEEECCCCCCCCCCHHHHHHHHHH
VFGSPPYWQR
HHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8635745; 7542800 [H]